https://netbiolab.org/wiki/api.php?action=feedcontributions&feedformat=atom&user=Joonghee 2026-04-27T09:59:20Z User contributions MediaWiki 1.31.16 https://netbiolab.org/wiki/index.php?title=Web_Resources&diff=1978 2011-09-02T07:31:12Z

<p>Joonghee: /* TF/miRNA/Regulaorty network */</p> <hr /> <div>== Variome ==<br /> *[http://www.mutadatabase.org/ MutaDATABASE] a centralized and standardized DNA variation DB<br /> *[http://hapmap.ncbi.nlm.nih.gov/ HapMap Project] Catalog of human genetic variation<br /> *[http://www.1000genomes.org/ 1000 Genome Project] Deep catalog of human genetic variation<br /> *[http://cancergenome.nih.gov/ TCGA] The Cancer Genome Atlas<br /> *[http://www.icgc.org/home ICGC cancer genome project] International Cancer Genome Consortium Cancer genome project<br /> *[http://www.1001genomes.org/ 1001 Genome Project] Genetic variation of natural population of Arabidopsis<br /> <br /> == Transcriptome ==<br /> *[http://www.ncbi.nlm.nih.gov/geo/ GEO]<br /> *[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress]<br /> <br /> == Proteome/Localisome ==<br /> *[http://suba.plantenergy.uwa.edu.au/ SUBA] SUBcellular location DB for Arabidopsis proteins<br /> <br /> == Phenome/Metabolome ==<br /> *[http://www.ncbi.nlm.nih.gov/omim OMIM] Human disease DB <br /> *[http://www.who.int/classifications/icd/en/ ICD] International Classification of Disease by WHO<br /> *[http://genomernai.de/GenomeRNAi/ GenomeRNAi] A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...)<br /> *[http://www.plastid.msu.edu/ cloroplast2010] Phenome/metabolome DB for Arabidopsis clroloplast gene KO lines (by MSU)<br /> <br /> == Genotype-to-phenotype map ==<br /> *[http://www.genome.gov/gwastudies/ GWAS catalog]<br /> *[http://distild.jensenlab.org/ DistiLD] Diseases and Traits in Linkage Disequilibrium Blocks<br /> *[http://www.personalgenomes.org/ Personal Genome Project]<br /> <br /> == Interactome/Network ==<br /> *[http://code.google.com/p/psicquic/ Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)]<br /> *[http://www.imexconsortium.org/ International Molecular Exchange Consortium (IMEx)]<br /> *[http://wodaklab.org/iRefWeb/ iRefWeb] a web interface to PPI consolidated from 10 public DB (BIND, BioGRID, CORUM, DIP,IntAct, HPRD, MINT, MPact, MPPI, OPHID(predicted PPIs))<br /> *[http://bond.unleashedinformatics.com/ BIND] the Biomolecular Interaction Network Database<br /> *[http://thebiogrid.org/ BioGRID]<br /> *[http://mips.helmholtz-muenchen.de/genre/proj/corum/index.html CORUM] Comprehensive Resource of Mammalian Protein Complexes<br /> *[http://dip.doe-mbi.ucla.edu/dip/ DIP] Database of Interacting Proteins<br /> *[http://www.ebi.ac.uk/intact/ IntAct]<br /> *[http://www.hprd.org/ HPRD] Human Protein Reference Database<br /> *[http://mint.bio.uniroma2.it/mint/ MINT] Molecular Interaction DB<br /> *[http://mips.helmholtz-muenchen.de/genre/proj/mpact Mpact] Representation of Interaction Data at MIPS<br /> *[http://mips.helmholtz-muenchen.de/proj/ppi/ MPPI] Mammalian PPI DB at MIPS<br /> *[http://string-db.org/ STRING] Known and predicted PPI<br /> <br /> == TF/miRNA/Regulaorty network ==<br /> *[http://plntfdb.bio.uni-potsdam.de// PlnTFDB] Plant TF database by University of Potsdam, Germany<br /> *[http://planttfdb.cbi.pku.edu.cn// PlantTFDB] Plant TF database by Peking University, China<br /> *[http://arabidopsis.med.ohio-state.edu/ AGRIS] Arabidopsis Gene Regulatory Information Server (by OSU)<br /> *[http://mirbase.org// miRBase] miRNA database by Manchester University<br /> *[http://mirgator.kobic.re.kr:8080/MEXWebApp// miRGator]<br /> *[http://www.microrna.org/microrna// microRNA.org]<br /> *[http://www.targetscan.org// TargetScanHuman]<br /> *[http://pictar.mdc-berlin.de// PicTar] An algorithm for miRNA target scan<br /> *[http://jcclab.science.oregonstate.edu// Carrington Lab Resource] Various DBs for plant miRNA<br /> *[http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl// hmChIP] DB for publicly available human and mouse ChIP-seq and ChIP-chip data<br /> <br /> == Chemical/Drug/Drug network ==<br /> *[http://pubchem.ncbi.nlm.nih.gov/ PubChem]<br /> *[http://stitch.embl.de/ STITCH] DB for known and predicted chemical-protein interaction<br /> <br /> == Ontology/Pathway ==<br /> *[http://www.geneontology.org/ Gene Ontology]<br /> *[http://www.reactome.org/ Reactome] A manually curated and peer-reviewed pathway DB<br /> *[http://biocyc.org/ Biocyc]<br /> <br /> == Animal genomes ==<br /> *[http://www.wormbase.org/ WormBase]<br /> *[http://flybase.org/ FlyBase]<br /> *[http://www.informatics.jax.org/ MGI]<br /> <br /> == Plant genomes ==<br /> *[http://5e.plantphys.net/index.php Plant Physiology web]<br /> *[http://www.arabidopsis.org/ TAIR]<br /> *[http://www.gramene.org/ Gramene]<br /> *[http://www.maizegdb.org/ MaizeGDB]<br /> *[http://www.agbase.msstate.edu/ AgBase] Curated DB for functional analysis of agriculural animals and plants<br /> <br /> == Metagenomes ==<br /> *[http://portal.camera.calit2.net/gridsphere/gridsphere CAMERA 2.0] Curated DB and analysis tool for metagenomes<br /> *[http://www.ncbi.nlm.nih.gov/genomes/lenvs.cgi NCBI Metagenome DB] Categorized with metagenome types, sources and sequencing methods.<br /> <br /> == Other genomes ==<br /> *[http://www.pseudomonas.com/ Pseudomonas Genome Database]<br /> *[http://www.yeastgenome.org/ Saccharomyces Genome Database]<br /> *[http://www.candidagenome.org/ Candida Genome Database] <br /> *[http://genome.jgi-psf.org/Naegr1/Naegr1.home.html Naegleria gruberi JGI home]<br /> <br /> == Other resources ==<br /> *[http://www.genomesonline.org/ GOLD] Genome Online Database-Genome project statistics and download links<br /> *[http://genomeinterpretation.org/ CAGI] Critical Assessment of Genome Interpretation<br /> *[http://nightscience.org/ nightscience] Collective creativity in scientific discovery games</div>

Joonghee https://netbiolab.org/wiki/index.php?title=People:JH_Soh&diff=1910 2011-07-29T09:00:24Z

<p>Joonghee: </p> <hr /> <div>{|<br /> |<br /> [[File:People_JHSoh.jpg|300px]]<br /> | (2008-present) Underwood International College (Yonsei University) <br /> |}</div>

Joonghee https://netbiolab.org/wiki/index.php?title=Web_Resources&diff=1902 2011-07-29T08:45:25Z

<p>Joonghee: /* TF/miRNA */</p> <hr /> <div>== Variome ==<br /> <br /> == Transcriptome ==<br /> *[http://www.ncbi.nlm.nih.gov/geo/ GEO]<br /> *[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress]<br /> <br /> == Proteome ==<br /> <br /> == Metabolome ==<br /> <br /> == Phenome ==<br /> *[http://www.ncbi.nlm.nih.gov/omim OMIM]<br /> <br /> == Genotype-to-phenotype map ==<br /> *[http://www.genome.gov/gwastudies/ GWAS catalog]<br /> <br /> == Interactome/Network ==<br /> *[http://code.google.com/p/psicquic/ Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)]<br /> *[http://www.imexconsortium.org/ International Molecular Exchange Consortium (IMEx)]<br /> *[http://www.hprd.org/ Human Protein Reference Database (HPRD)]<br /> <br /> == TF/miRNA ==<br /> *[http://http://mirbase.org// miRBase]<br /> *[http://mirgator.kobic.re.kr:8080/MEXWebApp// miRGator]<br /> *[http://www.microrna.org/microrna/home.do// microRNA.org]<br /> *[http://www.targetscan.org// TargetScanHuman]<br /> *[http://pictar.mdc-berlin.de// PicTar]<br /> <br /> == Chemical/Drug ==<br /> *[http://pubchem.ncbi.nlm.nih.gov/ PubChem]<br /> <br /> == Ontology/Pathway ==<br /> *[http://www.geneontology.org/ Gene Ontology]<br /> *[http://biocyc.org/ Biocyc]<br /> <br /> == Bacterial genomes ==<br /> *[http://www.pseudomonas.com/ Pseudomonas Genome Database]<br /> <br /> == Fungal genomes ==<br /> *[http://www.yeastgenome.org/ Saccharomyces Genome Database]<br /> *[http://www.candidagenome.org/ Candida Genome Database] <br /> <br /> == Animal genomes ==<br /> *[http://www.wormbase.org/ WormBase]<br /> *[http://flybase.org/ FlyBase]<br /> *[http://www.informatics.jax.org/ MGI]<br /> <br /> == Plant genomes ==<br /> *[http://5e.plantphys.net/index.php Plant Physiology web]<br /> *[http://www.arabidopsis.org/ TAIR]<br /> *[http://www.gramene.org/ Gramene]<br /> *[http://www.maizegdb.org/ MaizeGDB] <br /> <br /> == Metagenomes ==<br /> <br /> == Stem Cells ==<br /> <br /> == Others ==</div>

Joonghee https://netbiolab.org/wiki/index.php?title=Web_Resources&diff=1901 2011-07-29T08:41:41Z

<p>Joonghee: /* TF/miRNA */</p> <hr /> <div>== Variome ==<br /> <br /> == Transcriptome ==<br /> *[http://www.ncbi.nlm.nih.gov/geo/ GEO]<br /> *[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress]<br /> <br /> == Proteome ==<br /> <br /> == Metabolome ==<br /> <br /> == Phenome ==<br /> *[http://www.ncbi.nlm.nih.gov/omim OMIM]<br /> <br /> == Genotype-to-phenotype map ==<br /> *[http://www.genome.gov/gwastudies/ GWAS catalog]<br /> <br /> == Interactome/Network ==<br /> *[http://code.google.com/p/psicquic/ Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)]<br /> *[http://www.imexconsortium.org/ International Molecular Exchange Consortium (IMEx)]<br /> *[http://www.hprd.org/ Human Protein Reference Database (HPRD)]<br /> <br /> == TF/miRNA ==<br /> *[http://http://mirbase.org// miRBase]<br /> <br /> == Chemical/Drug ==<br /> *[http://pubchem.ncbi.nlm.nih.gov/ PubChem]<br /> <br /> == Ontology/Pathway ==<br /> *[http://www.geneontology.org/ Gene Ontology]<br /> *[http://biocyc.org/ Biocyc]<br /> <br /> == Bacterial genomes ==<br /> *[http://www.pseudomonas.com/ Pseudomonas Genome Database]<br /> <br /> == Fungal genomes ==<br /> *[http://www.yeastgenome.org/ Saccharomyces Genome Database]<br /> *[http://www.candidagenome.org/ Candida Genome Database] <br /> <br /> == Animal genomes ==<br /> *[http://www.wormbase.org/ WormBase]<br /> *[http://flybase.org/ FlyBase]<br /> *[http://www.informatics.jax.org/ MGI]<br /> <br /> == Plant genomes ==<br /> *[http://5e.plantphys.net/index.php Plant Physiology web]<br /> *[http://www.arabidopsis.org/ TAIR]<br /> *[http://www.gramene.org/ Gramene]<br /> *[http://www.maizegdb.org/ MaizeGDB] <br /> <br /> == Metagenomes ==<br /> <br /> == Stem Cells ==<br /> <br /> == Others ==</div>

Joonghee https://netbiolab.org/wiki/index.php?title=Web_Resources&diff=1900 2011-07-29T08:41:31Z

<p>Joonghee: /* TF/miRNA */</p> <hr /> <div>== Variome ==<br /> <br /> == Transcriptome ==<br /> *[http://www.ncbi.nlm.nih.gov/geo/ GEO]<br /> *[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress]<br /> <br /> == Proteome ==<br /> <br /> == Metabolome ==<br /> <br /> == Phenome ==<br /> *[http://www.ncbi.nlm.nih.gov/omim OMIM]<br /> <br /> == Genotype-to-phenotype map ==<br /> *[http://www.genome.gov/gwastudies/ GWAS catalog]<br /> <br /> == Interactome/Network ==<br /> *[http://code.google.com/p/psicquic/ Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)]<br /> *[http://www.imexconsortium.org/ International Molecular Exchange Consortium (IMEx)]<br /> *[http://www.hprd.org/ Human Protein Reference Database (HPRD)]<br /> <br /> == TF/miRNA ==<br /> *[http://http://mirbase.org// miRBase (miR)]<br /> <br /> == Chemical/Drug ==<br /> *[http://pubchem.ncbi.nlm.nih.gov/ PubChem]<br /> <br /> == Ontology/Pathway ==<br /> *[http://www.geneontology.org/ Gene Ontology]<br /> *[http://biocyc.org/ Biocyc]<br /> <br /> == Bacterial genomes ==<br /> *[http://www.pseudomonas.com/ Pseudomonas Genome Database]<br /> <br /> == Fungal genomes ==<br /> *[http://www.yeastgenome.org/ Saccharomyces Genome Database]<br /> *[http://www.candidagenome.org/ Candida Genome Database] <br /> <br /> == Animal genomes ==<br /> *[http://www.wormbase.org/ WormBase]<br /> *[http://flybase.org/ FlyBase]<br /> *[http://www.informatics.jax.org/ MGI]<br /> <br /> == Plant genomes ==<br /> *[http://5e.plantphys.net/index.php Plant Physiology web]<br /> *[http://www.arabidopsis.org/ TAIR]<br /> *[http://www.gramene.org/ Gramene]<br /> *[http://www.maizegdb.org/ MaizeGDB] <br /> <br /> == Metagenomes ==<br /> <br /> == Stem Cells ==<br /> <br /> == Others ==</div>

Joonghee https://netbiolab.org/wiki/index.php?title=Web_Resources&diff=1899 2011-07-29T08:41:14Z

<p>Joonghee: /* TF/miRNA */</p> <hr /> <div>== Variome ==<br /> <br /> == Transcriptome ==<br /> *[http://www.ncbi.nlm.nih.gov/geo/ GEO]<br /> *[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress]<br /> <br /> == Proteome ==<br /> <br /> == Metabolome ==<br /> <br /> == Phenome ==<br /> *[http://www.ncbi.nlm.nih.gov/omim OMIM]<br /> <br /> == Genotype-to-phenotype map ==<br /> *[http://www.genome.gov/gwastudies/ GWAS catalog]<br /> <br /> == Interactome/Network ==<br /> *[http://code.google.com/p/psicquic/ Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)]<br /> *[http://www.imexconsortium.org/ International Molecular Exchange Consortium (IMEx)]<br /> *[http://www.hprd.org/ Human Protein Reference Database (HPRD)]<br /> <br /> == TF/miRNA ==<br /> *[http://http://mirbase.org// miRBase (miRBase)]<br /> <br /> == Chemical/Drug ==<br /> *[http://pubchem.ncbi.nlm.nih.gov/ PubChem]<br /> <br /> == Ontology/Pathway ==<br /> *[http://www.geneontology.org/ Gene Ontology]<br /> *[http://biocyc.org/ Biocyc]<br /> <br /> == Bacterial genomes ==<br /> *[http://www.pseudomonas.com/ Pseudomonas Genome Database]<br /> <br /> == Fungal genomes ==<br /> *[http://www.yeastgenome.org/ Saccharomyces Genome Database]<br /> *[http://www.candidagenome.org/ Candida Genome Database] <br /> <br /> == Animal genomes ==<br /> *[http://www.wormbase.org/ WormBase]<br /> *[http://flybase.org/ FlyBase]<br /> *[http://www.informatics.jax.org/ MGI]<br /> <br /> == Plant genomes ==<br /> *[http://5e.plantphys.net/index.php Plant Physiology web]<br /> *[http://www.arabidopsis.org/ TAIR]<br /> *[http://www.gramene.org/ Gramene]<br /> *[http://www.maizegdb.org/ MaizeGDB] <br /> <br /> == Metagenomes ==<br /> <br /> == Stem Cells ==<br /> <br /> == Others ==</div>

Joonghee