https://netbiolab.org/wiki/api.php?action=feedcontributions&feedformat=atom&user=Junha92 2026-04-07T02:39:11Z User contributions MediaWiki 1.31.16 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=6237 2024-06-12T03:47:37Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Junha Cha*''', Insuk Lee**. Single-cell network biology for resolving cellular heterogeneity in human diseases. '''''Experimental &amp; Molecular Medicine''''' (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkab1048<br /> * '''Junha Cha*''', Jiwon Yu, Jae-Won Cho, Martin Hemberg**, Insuk Lee**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi*, Junhan Kim, Noam Shomron**, Insuk Lee**. Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis. '''''Computational and Structural Biotechnology Journal''''' (2023). https://doi.org/10.1016/j.csbj.2023.03.036<br /> *Chang Gon Kim*, Min Hee Hong*, Dahee Kim*, Brian Hyohyoung Lee*, Hyunwook Kim*, Chan-Young Ock*, Geoffrey Kelly, Yoon Ji Bang, Gamin Kim, Jung Eun Lee, Chaeyeon Kim, Se-Heon Kim, Hyun Jun Hong, Young Min Park, Nam Suk Sim, Heejung Park, Jin Woo Park, Chang Geol Lee, Kyung Hwan Kim, Goeun Park, Inkyung Jung, Dawoon Han, Jong Hoon Kim, '''Junha Cha''', Insuk Lee, Mingu Kang, Heon Song, Chiyoon Oum, Seulki Kim, Sukjun Kim, Yoojoo Lim, Seunghee Kim-Schulze, Miriam Merad, Sun Och Yoon**, Hyun Je Kim**, Yoon Woo Koh**, Hye Ryun Kim**, A phase II open-label randomized clinical trial of preoperative durvalumab or durvalumab plus tremelimumab in resectable head and neck squamous cell carcinoma '''''Clinical Cancer Research''''' (2024) https://doi.org/10.1158/1078-0432.CCR-23-3249<br /> * '''Junha Cha*''', Da Hee Kim*, Gamin Kim*, Jae-Won Cho, Euijeong Sung, Seungbyn Baek, Min Hee Hong, Chang Gon Kim, Nam Suk Sim, Hyun Jun Hong, Jung Eun Lee, Martin Hemberg Seyeon Park, Sun Ock Yoon, Sang Jun Ha**, Yoon Woo Koh**, Hye Ryun Kim**, Insuk Lee**. Single-cell analysis reveals cellular and molecular factors counteracting HPV-positive oropharyngeal cancer immunotherapy outcomes '''''J. Immunother. Cancer''''' (2024). https://doi.org/10.1136/jitc-2023-008667</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=6236 2024-06-12T03:44:14Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Junha Cha*''', Insuk Lee**. Single-cell network biology for resolving cellular heterogeneity in human diseases. '''''Experimental &amp; Molecular Medicine''''' (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkab1048<br /> * '''Junha Cha*''', Jiwon Yu, Jae-Won Cho, Martin Hemberg**, Insuk Lee**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi*, Junhan Kim, Noam Shomron**, Insuk Lee**. Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis. '''''Computational and Structural Biotechnology Journal''''' (2023). https://doi.org/10.1016/j.csbj.2023.03.036<br /> * '''Junha Cha*''', Da Hee Kim*, Gamin Kim*, Jae-Won Cho, Euijeong Sung, Seungbyn Baek, Min Hee Hong, Chang Gon Kim, Nam Suk Sim, Hyun Jun Hong, Jung Eun Lee, Martin Hemberg Seyeon Park, Sun Ock Yoon, Sang Jun Ha**, Yoon Woo Koh**, Hye Ryun Kim**, Insuk Lee**. Single-cell analysis reveals cellular and molecular factors counteracting HPV-positive oropharyngeal cancer immunotherapy outcomes '''''J. Immunother. Cancer''''' (2024). https://doi.org/10.1136/jitc-2023-008667</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5978 2023-03-31T01:33:28Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Junha Cha*''', Insuk Lee**. Single-cell network biology for resolving cellular heterogeneity in human diseases. '''''Experimental &amp; Molecular Medicine''''' (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkab1048<br /> * '''Junha Cha*''', Jiwon Yu, Jae-Won Cho, Martin Hemberg**, Insuk Lee**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi*, Junhan Kim, Noam Shomron**, Insuk Lee**. Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis. '''''Computational and Structural Biotechnology Journal''''' (2023). https://doi.org/10.1016/j.csbj.2023.03.036</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5977 2023-03-30T00:51:28Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Junha Cha*''', Insuk Lee**. Single-cell network biology for resolving cellular heterogeneity in human diseases. '''''Experimental &amp; molecular medicine''''' (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkab1048<br /> * '''Junha Cha*''', Jiwon Yu, Jae-Won Cho, Martin Hemberg**, Insuk Lee**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi*, Junhan Kim, Noam Shomron**, Insuk Lee**. Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis. '''''Computational and Structural Biotechnology Journal''''' (2023). https://doi.org/10.1016/j.csbj.2023.03.036</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5976 2023-03-30T00:50:34Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Junha Cha*''', Insuk Lee**. Single-cell network biology for resolving cellular heterogeneity in human diseases. '''''Experimental &amp; molecular medicine''''' (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkab1048<br /> * '''Junha Cha*''', Jiwon Yu, Jae-Won Cho, Martin Hemberg**, Insuk Lee**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi*, Junhan Kim, Noam Shomron, Insuk Lee**. Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis. '''''Computational and Structural Biotechnology Journal''''' (2023). https://doi.org/10.1016/j.csbj.2023.03.036</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5975 2023-03-30T00:49:13Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Junha Cha*''', Insuk Lee**. Single-cell network biology for resolving cellular heterogeneity in human diseases. '''''Experimental &amp; molecular medicine''''' (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkab1048<br /> * '''Junha Cha*''', Jiwon Yu, Jae-Won Cho, Martin Hemberg**, Insuk Lee**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi, Junhan Kim, Noam Shomron, Insuk Lee**. Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis. '''''Computational and Structural Biotechnology Journal''''' (2023). https://doi.org/10.1016/j.csbj.2023.03.036</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5974 2023-03-30T00:41:59Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell network biology for resolving cellular heterogeneity in human diseases. '''''Experimental &amp; molecular medicine''''' (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkab1048<br /> * '''Cha J*''', Yu J, Cho JW, Hemberg M**, Lee I**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. '''''Nucleic Acids Research''''' (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi, Junhan Kim, Noam Shomron, Insuk Lee**. Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis. '''''Computational and Structural Biotechnology Journal''''' (2023). https://doi.org/10.1016/j.csbj.2023.03.036</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5973 2023-03-30T00:35:27Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell network biology for resolving cellular heterogeneity in human diseases. Exp Mol Med 52, 1798–1808 (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkab1048<br /> * '''Cha J*''', Yu J, Cho JW, Hemberg M**, Lee I**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi, Junhan Kim, Noam Shomron, Insuk Lee**. Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis. Computational and Structural Biotechnology Journal (2023). https://doi.org/10.1016/j.csbj.2023.03.036</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People&diff=5935 2023-01-22T12:16:06Z

<p>Junha92: /* Scientists &amp; Research Staff */</p> <hr /> <div>__NOTOC__<br /> =='''Scientists &amp; Research Staff'''==<br /> {|border=&quot;0&quot; width=&quot;1050&quot;<br /> |align=&quot;center&quot;|[[File:이인석-2011사진.jpg|90px|link=people:IS_Lee]]<br /> |align=&quot;center&quot;|[[File:Smyang.jpg|70px|link=people:SM_Yang]]<br /> |align=&quot;center&quot;|[[File:Shlee thumbnail.jpg|70px|link=People:S_Lee]]<br /> |align=&quot;center&quot;|[[File:Junha_Cha_profile2.png|80px|link=People:JH_Cha]]<br /> |align=&quot;center&quot;|[[File:나연.png|70px|link=People:NY_Kim]]<br /> |align=&quot;center&quot;|[[File:Bsb pic 2.jpg|70px|link=People:SB_Baek]]<br /> |align=&quot;center&quot;|[[File:KakaoTalk 20200914 132021053.jpg|70px|link=People:IS_Choi]]<br /> |-<br /> |align=&quot;center&quot;|[[people:IS_Lee|&lt;big&gt;'''Insuk Lee'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[people:SM_Yang|&lt;big&gt;'''Sunmo Yang'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:S_Lee|&lt;big&gt;'''Sungho Lee'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|&lt;big&gt;'''Junha Cha'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|&lt;big&gt;'''Nayeon Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|&lt;big&gt;'''Seungbyn Baek'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:IS_Choi|&lt;big&gt;'''Ilseok Choi'''&lt;/big&gt;]]<br /> |-<br /> |align=&quot;center&quot;|[[people:IS_Lee|Principal Investigator&lt;br/&gt;Professor]]<br /> |align=&quot;center&quot;|[[people:SM_Yang|Bioinformatics&lt;br/&gt;Programmer&lt;br/&gt;&amp; Sys. Admin]]<br /> |align=&quot;center&quot;|[[People:S_Lee|Ph.D candidate (Microbiome)&lt;br/&gt;(2017.3 - )]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|Ph.D candidate (Single-cell Biology)&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|Integrated Ph.D course (Single-cell Biology)&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:IS_Choi|Integrated Ph.D course (Single-cell Biology)&lt;br/&gt;(2020.9 - )]]<br /> |}<br /> {|border=&quot;0&quot; width=&quot;1050&quot;<br /> |align=&quot;center&quot;|[[File:chajh profile.jpg|70px|link=People:Junhyeong_Cha]]<br /> |align=&quot;center&quot;|[[File:KakaoTalk 20210225 184422243.jpg|70px|link=People:Junyeong_Ma]]<br /> |align=&quot;center&quot;|[[File:profile_front_resized.jpg|80px|link=People:Han-June_KIM]]<br /> |align=&quot;center&quot;|[[File:사진.jpg|70px|link=People:Jiwon_Yu]]<br /> |align=&quot;center&quot;|[[File:KakaoTalk_20210825_174338962.jpg|80px|link=People:EuiJeong_Sung]]<br /> |align=&quot;center&quot;|[[File:Hunsei.PNG|80px|link=People:Sehun_Ahn]]<br /> |align=&quot;center&quot;|[[File:고건.jpg|80px|link=People:Geon_Koh]]<br /> |-<br /> |align=&quot;center&quot;|[[People:Junhyeong_Cha|&lt;big&gt;'''Junhyeong Cha'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Junyeong_Ma|&lt;big&gt;'''Junyeong Ma'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Hanjune_Kim|&lt;big&gt;'''Hanjune Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Jiwon_Yu|&lt;big&gt;'''Jiwon Yu'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Euijeong_Sung|&lt;big&gt;'''Euijeong Sung'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Sehun_Ahn|&lt;big&gt;'''Sehun Ahn'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Geon Koh|&lt;big&gt;'''Geon Koh'''&lt;/big&gt;]]<br /> |-<br /> |align=&quot;center&quot;|[[People:Junhyeong_Cha|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2020.9 - )]]<br /> |align=&quot;center&quot;|[[People:Junyeong_Ma|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2021.3 - )]]<br /> |align=&quot;center&quot;|[[People:Hanjune_Kim|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2021.3 - )]]<br /> |align=&quot;center&quot;|[[People:Jiwon_Yu|MEng course (Single-cell Biology)&lt;br/&gt;(2021.9 - )]]<br /> |align=&quot;center&quot;|[[People:Euijeong_Sung|Integrated Ph.D course (Single-cell Biology)&lt;br/&gt;(2021.9 - )]]<br /> |align=&quot;center&quot;|[[People:Sehun_Ahn|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2022.3 - )]]<br /> |align=&quot;center&quot;|[[People:Geon_Koh|Integrated Ph.D course (Single-cell Biology)&lt;br/&gt;(2022.9 - )]]<br /> |}<br /> <br /> =='''Administrative Assistant'''==<br /> *Eunjung Choi<br /> =='''Undergraduate Students'''==<br /> *Won Jong Kim<br /> *Jungyeon Kim<br /> *Seol Song<br /> <br /> =='''Alumni'''==<br /> *'''Former Post-docs and Staff Scientists'''<br /> **Taeyun Oh (2009.5-2011.12), currently Senior Researcher at Cowellbiogim, Korea <br /> **Sohyun Hwang (2010.3-2015.8), currently Associate Professor (차의과대학 의과학과 교수), [https://grad.cha.ac.kr/%ed%99%a9%ec%86%8c%ed%98%84/ Department of Biomedical Science, CHA University], Korea [https://scholar.google.com/citations?user=z5yC9cwAAAAJ&amp;hl=en Google Scholar]<br /> **Samuel Beck (2011.2-2011.12), currently Associate Professor, Boston University, USA (미 보스턴 대학교 부교수), [https://beck310.wixsite.com/becklab Lab Homepage]<br /> **Jawon Song (2011.1-2012.5), currently Research Associate (미국 텍사스슈퍼컴퓨팅센터 선임연구원), [https://www.tacc.utexas.edu/about/directory/jawon-song Texas Advanced Computing Center], Austin, TX, USA [https://scholar.google.com/citations?user=wv61wGoAAAAJ&amp;hl=en Google Scholar]<br /> **Yoonhee Ko (2012.8-2014.2), currently Associate Professor (한국외국어대 바이오공학과 교수), [https://hufsbiomed.weebly.com/ Department of Biomedical Engineering, Hankuk University of Foreign Studies], Korea [https://scholar.google.com/citations?user=GBxCYX8AAAAJ&amp;hl=en Google Scholar]<br /> **Jonghoon Lee (2013.10-2014.2), currently Associate Professor (가천대학교 식품생명공학과 교수), [https://www.gachon.ac.kr/foodbiotech/6142/subview.do Department of Food Biotechnology, Gachon University], Korea <br /> **Jung Eun Shim (2009.8-2017.11), currently Staff Scientist at Yonsei Genomics Center Bioinformatics Data Analysis Core (연세의료원 유전체센터 생명정보분석코어 책임연구원)<br /> <br /> *'''Former Graduate Students (Ph.D)'''<br /> **Junha Shin (2008.9-2014.2), PhD; currently Postdoc Fellow, University of Wisconsin-Madison (미국 위스콘신주립대 박사후연구원), USA [https://roylab.discovery.wisc.edu/ Roy Lab]<br /> **Hanhae Kim (2009.9-2015.2), PhD; currently Research Fellow (한국과학기술기획평가원 연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Ara Cho (2009.9-2015.2), PhD; currently Research Fellow (한국과학기술기획평가원 연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Eiru Kim (2010.9-2016.8), PhD; currently Senior Expert in Data Science, [https://www.gnf.org/ The Genomics Institute of the Novartis Research Foundation], San Diego, USA (노바티스 선임데이터분석연구원)<br /> **Tak Lee (2011.3-2017.2), PhD; currently Senior Bioinformatician, [https://www.mpipz.mpg.de/en Max Planck Institute for Plant Breeding Research] (독일 막스플랭크 연구소 선임연구원) <br /> **Heonjong Han (2013.3~2019.8), PhD; currently Bioinformatics engineer at [https://3billion.io/ 3billion] (헬스케어스타트업 데이터사이언티스트)<br /> **Kyungsoo Kim (2013.3~2020.2), PhD; currently Research Professor at Severance Hospital (강남세브란스의료원 유방암센터 연구교수)<br /> **Jae-Won Cho (2016.9~2021.2), PhD; currently Postdoc Fellow at Harvard Medical School (하버드의대 박사후 연구원) [https://scholar.google.com/citations?user=H4jO_DQAAAAJ&amp;hl=en Hemberg Lab] <br /> **Chan Yeong Kim (2015.3~2021.2), PhD; currently Postdoc Fellow at European Molecular Biology Laboratory in Heidelberg (유럽연합분자생물학연구소 박사후 연구원) [http://www.bork.embl.de/j/ Bork Group]<br /> <br /> *'''Former Graduate Students (Master's degree)'''<br /> **Sun-Gou Ji (2009.9-2011.8), M.Eng.; PhD from University of Cambridge (Sanger Genome center); currently Vice President, Computational Genetics at [https://bridgebio.com/ BridgeBio Pharma], Boston, USA (미 바이오기업 임원)<br /> **Hyojin Kim (2013.3-2015.2), M.Eng.; PhD from University of Aachen; currently Computational Scientist, Uniklinikum Aachen (the university hospital of the city of Aachen), Germany (독일 아헨대학병원 데이터사이언티스트)<br /> **Hongseok Shim (2013.9-2015.8), M.Eng.; currently PhD student, Arizona State University, Biomedical Informatics program (애리조나주립대 생물정보학 박사과정)<br /> **Sunmo Yang (2014.9-2017.2), M.Eng. currently Bioinformatics programmer, Yonsei University (연세대 네트워크생명공학 연구실 책임데이터연구원)<br /> **Muyoung Lee (2016.3-2018.2), M.Eng. currently PhD student, University of Texas at Austin, Cellular and Molecular Biology Program (텍사스주립대 생물정보학 박사과정)<br /> <br /> *'''Former Visiting Scientists/Students'''<br /> **Minkyung Shin (2012.3-2012.7), went to University of Southern California graduate school <br /> **Paul Chung (2012 summer), currently E-Commerce Analyst/Coordinator at [http://www.riotgames.com/ Riot Games], USA<br /> **Hyunjin Cho (2014 summer), currently Bioinformatics research assistant at [http://www.libd.org/ The Lieber Institute for Brain Development | LIBD], USA<br /> **Michael Chung (2016.8-2016.12), currently work at [https://about.meta.com/ Meta], USA<br /> <br /> *'''Former Undergraduate Students'''<br /> **1. Ila Shin, went to medical school (Yonsei Univ.)<br /> **2. Yoonkyung Ko<br /> **3. Sangyo Park, went to law school (Kyounghee Univ.)<br /> **4. Jayoon Shin, went to medical school (Pusan National Univ.)<br /> **5. Dongjoo Sun, went to dental school (Wongwang Univ.)<br /> **6. Eulsoo Kim<br /> **7. Myungwhan Lee, went to medical school (Yonsei Univ.)<br /> **8. Moonhee Lee, went to graduate school (University of Amsterdam, Netherlands)<br /> **9. Jinhyun Ju, went to graduate school (Cornell Medical School, Computational Systems Biology); Currently Principal Computational Biologist, Cancer Genomics at [https://bridgebio.com/ BridgeBio Pharma], Seattle, USA (미 바이오기업 선임연구원)<br /> **10. Haeyoung Shin, went to graduate school (Brown University, Computational Neuroscience)<br /> **11. Joonghee Soh, went to graduate school (KAIST, Culture Technology)<br /> **12. Hee Jung Cho, went to graduate school (UC Berkeley) <br /> **13. TaeHwan Kim, went to medical school<br /> **14. Joohyung Kim, went to medical school (Kyungpook National Univ.)<br /> **15. Donghyun Shin, went to medical school (Yonsei Univ.)<br /> **16. Byunghee Kang (2015 spring - 2016 summer), went to graduate school (PosTech)<br /> **17. Sunphil Kim (2016 winter)<br /> **18. Jaeho Shim (2016 winter)<br /> **19. Seunghyun Shin (2016 spring)<br /> **20. Aejoo Hong (2016 spring)<br /> **21. Changbae Bang (2016 summer), went to medical school (Yonsei Univ.)<br /> **22. Seoyoung Choi (2016 summer)<br /> **23. Dabin Jung (2016 summer)<br /> **24. Boreum Nam (2016 summer)<br /> **25. Seungun Lee (2016 summer)<br /> **26. Yeaji Kim (2016 summer and fall)<br /> **27. Sangyoung Lee (2017 winter)<br /> **28. Heejun Jang (2017 winter &amp; spring), went to KIST as Research Assistant<br /> **29. Jungha Lee (2017 summer), went to graduate school (Seoul National Univ.)<br /> **30. Seunghyun Wang (2017 summer), went to graduate school (KAIST)<br /> **31. Dong-Min Yang (2017 fall)<br /> **32. Doo-Hee Lee (2017 fall)<br /> **33. Suk-Jae Han (2018 winter)<br /> **34. Ji-Eun Han (2018 winter)<br /> **35. Yuri Ko (2018 spring)<br /> **36. Sung-Woo Kim (2018 spring)<br /> **37. Woosung Kwon (2018 summer)<br /> **38. Soyun Kong (2018 summer)<br /> **39. Hojeong Keum (2018 summer and fall)<br /> **40. Sungjun Lim (2018 summer and fall)<br /> **41. Jiyoon Lee (2018 summer and fall)<br /> **42. Ilseok Choi(2019 winter, spring, summer and fall, 2020 winter, spring)<br /> **43. Junik Park (2019 winter)<br /> **44. Lee Yoo (2019 winter &amp; spring)<br /> **45. Yeonwha Kim (2019 winter &amp; spring)<br /> **46. Sohee Kim (2019 spring)<br /> **47. Juseong Lee (2019 spring)<br /> **48. Junyoung Yang (2019 spring &amp; summer)<br /> **49. Junyoung Ma (2019 summer, 2020 winter, summer, fall, 2021 winter)<br /> **50. Dayun Jung (2019 summer)<br /> **51. Hanjoon Kim (2019 summer, 2021 winter)<br /> **52. Hyungjin Kim (2020 winter, spring)<br /> **53. Sujin Hyun (2020 winter)<br /> **54. Hyuki Lee (2020 winter)<br /> **55. Donghwan Lee (2020 winter)<br /> **56. Junhyung Cha (2020 spring, summer)<br /> **57. Jiwon Yu (2020 summer, 2021 Spring, summer)<br /> **58. Dong Seok Kim (2020 summer)<br /> **59. Donggeun Lee (2020 summer)<br /> **60. Sehun Ahn (2020 summer, 2021 winter, spring, summer, 2022 winter)<br /> **61. Jiho Kim (2020 summer)<br /> **62. Euijung Seong (2020 fall, 2021 spring, summer)<br /> **63. Junhan Kim (2021 winter &amp; spring)<br /> **64. Suyong Choi (2021 winter)<br /> **65. Sujin Pyeon (2021 Spring)<br /> **66. Hyeon Hee Ji (2021 Spring)<br /> **67. Semin Kim (2021 Summer)<br /> **68. Su Hwan Kim (2021 Summer)<br /> **69. Yongbin Kim (2021 Summer)<br /> **70. Nan Park (2021 Summer)<br /> **71. Hoyong Jung (2021 Summer)<br /> **72. Ingyeong Koh (2021 Summer)<br /> **73. Jongbin Jeong (2022 Winter)<br /> **74. Sungchul Yang (2022 Winter, Spring, Summer)<br /> **75. Hyojung Lee (2022 Winter, Spring)<br /> **76. Jun Hyeong Kim (2022 Winter, Spring)<br /> **77. Young Ji Roh (2022 Spring, Summer)<br /> **78. Geon Koh (2022 Spring, Summer)<br /> **79. Hayoung Kang (2022 Summer)<br /> **80. Won Jong Kim (2022 Summer, Fall, 2023 Winter)<br /> **81. Christian Lee (2022 Summer)<br /> **82. Je Yun Kang (2022 Summer)<br /> **83. Sumin Lee (2022 Fall)<br /> **84. Jungyeon Kim (2022 Fall, 2023 Winter)</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5934 2023-01-22T11:57:39Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell network biology for resolving cellular heterogeneity in human diseases. Exp Mol Med 52, 1798–1808 (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * '''Cha J*''', Yu J, Cho JW, Hemberg M**, Lee I**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkac1042<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkab1048</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5933 2023-01-22T11:52:02Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell network biology for resolving cellular heterogeneity in human diseases. Exp Mol Med 52, 1798–1808 (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * '''Cha J*''', Yu J, Cho JW, Hemberg M**, Lee I**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi*, Junhan Kim, Noam Shomron **, and Insuk Lee** Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis '''Under Review'''<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkab1048</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5932 2023-01-22T11:51:51Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell network biology for resolving cellular heterogeneity in human diseases. Exp Mol Med 52, 1798–1808 (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * '''Cha J'*'', Yu J, Cho JW, Hemberg M**, Lee I**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi*, Junhan Kim, Noam Shomron **, and Insuk Lee** Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis '''Under Review'''<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkab1048</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5931 2023-01-22T11:40:26Z

<p>Junha92: /* Junha Cha */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-cell Genomics<br /> ** Cancer Immunology<br /> ** Single-cell Network Biology<br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell network biology for resolving cellular heterogeneity in human diseases. Exp Mol Med 52, 1798–1808 (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * '''Cha J''', Yu J, Cho JW, Hemberg M**, Lee I**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi*, Junhan Kim, Noam Shomron **, and Insuk Lee** Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis '''Under Review'''<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkab1048</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5930 2023-01-22T11:39:22Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single Cell Genomics<br /> ** Single-cell Network Biology<br /> ** Analysis of Clinical Immunotherapy Samples <br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell network biology for resolving cellular heterogeneity in human diseases. Exp Mol Med 52, 1798–1808 (2020). https://doi.org/10.1038/s12276-020-00528-0<br /> * '''Cha J''', Yu J, Cho JW, Hemberg M**, Lee I**. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkac1042<br /> * '''Junha Cha*''', Michael Lavi*, Junhan Kim, Noam Shomron **, and Insuk Lee** Imputation of single-cell transcriptome data enables the reconstruction of networks predictive of breast cancer metastasis '''Under Review'''<br /> * Chan Yeong Kim*, Seungbyn Baek*, '''Junha Cha''', Sunmo Yang, Eiru Kim, Edward M. Marcotte, Traver Hart, and Insuk Lee** HumanNet v3: An improved database of human gene networks for disease research Nucleic Acids Res (2022). https://doi.org/10.1093/nar/gkab1048</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People&diff=5929 2023-01-22T11:31:10Z

<p>Junha92: /* Scientists &amp; Research Staff */</p> <hr /> <div>__NOTOC__<br /> =='''Scientists &amp; Research Staff'''==<br /> {|border=&quot;0&quot; width=&quot;1050&quot;<br /> |align=&quot;center&quot;|[[File:이인석-2011사진.jpg|90px|link=people:IS_Lee]]<br /> |align=&quot;center&quot;|[[File:Smyang.jpg|70px|link=people:SM_Yang]]<br /> |align=&quot;center&quot;|[[File:Shlee thumbnail.jpg|70px|link=People:S_Lee]]<br /> |align=&quot;center&quot;|[[File:Junha_Cha_profile2.png|70px|link=People:JH_Cha]]<br /> |align=&quot;center&quot;|[[File:나연.png|70px|link=People:NY_Kim]]<br /> |align=&quot;center&quot;|[[File:Bsb pic 2.jpg|70px|link=People:SB_Baek]]<br /> |align=&quot;center&quot;|[[File:KakaoTalk 20200914 132021053.jpg|70px|link=People:IS_Choi]]<br /> |-<br /> |align=&quot;center&quot;|[[people:IS_Lee|&lt;big&gt;'''Insuk Lee'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[people:SM_Yang|&lt;big&gt;'''Sunmo Yang'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:S_Lee|&lt;big&gt;'''Sungho Lee'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|&lt;big&gt;'''Junha Cha'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|&lt;big&gt;'''Nayeon Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|&lt;big&gt;'''Seungbyn Baek'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:IS_Choi|&lt;big&gt;'''Ilseok Choi'''&lt;/big&gt;]]<br /> |-<br /> |align=&quot;center&quot;|[[people:IS_Lee|Principal Investigator&lt;br/&gt;Professor]]<br /> |align=&quot;center&quot;|[[people:SM_Yang|Bioinformatics&lt;br/&gt;Programmer&lt;br/&gt;&amp; Sys. Admin]]<br /> |align=&quot;center&quot;|[[People:S_Lee|Ph.D candidate (Microbiome)&lt;br/&gt;(2017.3 - )]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|Ph.D candidate&lt;br/&gt;(Single-cell Biology)&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|Integrated Ph.D course (Single-cell Biology)&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:IS_Choi|Integrated Ph.D course (Single-cell Biology)&lt;br/&gt;(2020.9 - )]]<br /> |}<br /> {|border=&quot;0&quot; width=&quot;1050&quot;<br /> |align=&quot;center&quot;|[[File:chajh profile.jpg|70px|link=People:Junhyeong_Cha]]<br /> |align=&quot;center&quot;|[[File:KakaoTalk 20210225 184422243.jpg|70px|link=People:Junyeong_Ma]]<br /> |align=&quot;center&quot;|[[File:profile_front_resized.jpg|80px|link=People:Han-June_KIM]]<br /> |align=&quot;center&quot;|[[File:사진.jpg|70px|link=People:Jiwon_Yu]]<br /> |align=&quot;center&quot;|[[File:KakaoTalk_20210825_174338962.jpg|80px|link=People:EuiJeong_Sung]]<br /> |align=&quot;center&quot;|[[File:Hunsei.PNG|80px|link=People:Sehun_Ahn]]<br /> |align=&quot;center&quot;|[[File:고건.jpg|80px|link=People:Geon_Koh]]<br /> |-<br /> |align=&quot;center&quot;|[[People:Junhyeong_Cha|&lt;big&gt;'''Junhyeong Cha'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Junyeong_Ma|&lt;big&gt;'''Junyeong Ma'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Hanjune_Kim|&lt;big&gt;'''Hanjune Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Jiwon_Yu|&lt;big&gt;'''Jiwon Yu'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Euijeong_Sung|&lt;big&gt;'''Euijeong Sung'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Sehun_Ahn|&lt;big&gt;'''Sehun Ahn'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Geon Koh|&lt;big&gt;'''Geon Koh'''&lt;/big&gt;]]<br /> |-<br /> |align=&quot;center&quot;|[[People:Junhyeong_Cha|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2020.9 - )]]<br /> |align=&quot;center&quot;|[[People:Junyeong_Ma|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2021.3 - )]]<br /> |align=&quot;center&quot;|[[People:Hanjune_Kim|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2021.3 - )]]<br /> |align=&quot;center&quot;|[[People:Jiwon_Yu|MEng course (Single-cell Biology)&lt;br/&gt;(2021.9 - )]]<br /> |align=&quot;center&quot;|[[People:Euijeong_Sung|Integrated Ph.D course (Single-cell Biology)&lt;br/&gt;(2021.9 - )]]<br /> |align=&quot;center&quot;|[[People:Sehun_Ahn|Integrated Ph.D course (Microbiome)&lt;br/&gt;(2022.3 - )]]<br /> |align=&quot;center&quot;|[[People:Geon_Koh|Integrated Ph.D course (Single-cell Biology)&lt;br/&gt;(2022.9 - )]]<br /> |}<br /> <br /> =='''Administrative Assistant'''==<br /> *Eunjung Choi<br /> =='''Undergraduate Students'''==<br /> *Won Jong Kim<br /> *Jungyeon Kim<br /> *Seol Song<br /> <br /> =='''Alumni'''==<br /> *'''Former Post-docs and Staff Scientists'''<br /> **Taeyun Oh (2009.5-2011.12), currently Senior Researcher at Cowellbiogim, Korea <br /> **Sohyun Hwang (2010.3-2015.8), currently Associate Professor (차의과대학 의과학과 교수), [https://grad.cha.ac.kr/%ed%99%a9%ec%86%8c%ed%98%84/ Department of Biomedical Science, CHA University], Korea [https://scholar.google.com/citations?user=z5yC9cwAAAAJ&amp;hl=en Google Scholar]<br /> **Samuel Beck (2011.2-2011.12), currently Associate Professor, Boston University, USA (미 보스턴 대학교 부교수), [https://beck310.wixsite.com/becklab Lab Homepage]<br /> **Jawon Song (2011.1-2012.5), currently Research Associate (미국 텍사스슈퍼컴퓨팅센터 선임연구원), [https://www.tacc.utexas.edu/about/directory/jawon-song Texas Advanced Computing Center], Austin, TX, USA [https://scholar.google.com/citations?user=wv61wGoAAAAJ&amp;hl=en Google Scholar]<br /> **Yoonhee Ko (2012.8-2014.2), currently Associate Professor (한국외국어대 바이오공학과 교수), [https://hufsbiomed.weebly.com/ Department of Biomedical Engineering, Hankuk University of Foreign Studies], Korea [https://scholar.google.com/citations?user=GBxCYX8AAAAJ&amp;hl=en Google Scholar]<br /> **Jonghoon Lee (2013.10-2014.2), currently Associate Professor (가천대학교 식품생명공학과 교수), [https://www.gachon.ac.kr/foodbiotech/6142/subview.do Department of Food Biotechnology, Gachon University], Korea <br /> **Jung Eun Shim (2009.8-2017.11), currently Staff Scientist at Yonsei Genomics Center Bioinformatics Data Analysis Core (연세의료원 유전체센터 생명정보분석코어 책임연구원)<br /> <br /> *'''Former Graduate Students (Ph.D)'''<br /> **Junha Shin (2008.9-2014.2), PhD; currently Postdoc Fellow, University of Wisconsin-Madison (미국 위스콘신주립대 박사후연구원), USA [https://roylab.discovery.wisc.edu/ Roy Lab]<br /> **Hanhae Kim (2009.9-2015.2), PhD; currently Research Fellow (한국과학기술기획평가원 연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Ara Cho (2009.9-2015.2), PhD; currently Research Fellow (한국과학기술기획평가원 연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Eiru Kim (2010.9-2016.8), PhD; currently Senior Expert in Data Science, [https://www.gnf.org/ The Genomics Institute of the Novartis Research Foundation], San Diego, USA (노바티스 선임데이터분석연구원)<br /> **Tak Lee (2011.3-2017.2), PhD; currently Senior Bioinformatician, [https://www.mpipz.mpg.de/en Max Planck Institute for Plant Breeding Research] (독일 막스플랭크 연구소 선임연구원) <br /> **Heonjong Han (2013.3~2019.8), PhD; currently Bioinformatics engineer at [https://3billion.io/ 3billion] (헬스케어스타트업 데이터사이언티스트)<br /> **Kyungsoo Kim (2013.3~2020.2), PhD; currently Research Professor at Severance Hospital (강남세브란스의료원 유방암센터 연구교수)<br /> **Jae-Won Cho (2016.9~2021.2), PhD; currently Postdoc Fellow at Harvard Medical School (하버드의대 박사후 연구원) [https://scholar.google.com/citations?user=H4jO_DQAAAAJ&amp;hl=en Hemberg Lab] <br /> **Chan Yeong Kim (2015.3~2021.2), PhD; currently Postdoc Fellow at European Molecular Biology Laboratory in Heidelberg (유럽연합분자생물학연구소 박사후 연구원) [http://www.bork.embl.de/j/ Bork Group]<br /> <br /> *'''Former Graduate Students (Master's degree)'''<br /> **Sun-Gou Ji (2009.9-2011.8), M.Eng.; PhD from University of Cambridge (Sanger Genome center); currently Vice President, Computational Genetics at [https://bridgebio.com/ BridgeBio Pharma], Boston, USA (미 바이오기업 임원)<br /> **Hyojin Kim (2013.3-2015.2), M.Eng.; PhD from University of Aachen; currently Computational Scientist, Uniklinikum Aachen (the university hospital of the city of Aachen), Germany (독일 아헨대학병원 데이터사이언티스트)<br /> **Hongseok Shim (2013.9-2015.8), M.Eng.; currently PhD student, Arizona State University, Biomedical Informatics program (애리조나주립대 생물정보학 박사과정)<br /> **Sunmo Yang (2014.9-2017.2), M.Eng. currently Bioinformatics programmer, Yonsei University (연세대 네트워크생명공학 연구실 책임데이터연구원)<br /> **Muyoung Lee (2016.3-2018.2), M.Eng. currently PhD student, University of Texas at Austin, Cellular and Molecular Biology Program (텍사스주립대 생물정보학 박사과정)<br /> <br /> *'''Former Visiting Scientists/Students'''<br /> **Minkyung Shin (2012.3-2012.7), went to University of Southern California graduate school <br /> **Paul Chung (2012 summer), currently E-Commerce Analyst/Coordinator at [http://www.riotgames.com/ Riot Games], USA<br /> **Hyunjin Cho (2014 summer), currently Bioinformatics research assistant at [http://www.libd.org/ The Lieber Institute for Brain Development | LIBD], USA<br /> **Michael Chung (2016.8-2016.12), currently work at [https://about.meta.com/ Meta], USA<br /> <br /> *'''Former Undergraduate Students'''<br /> **1. Ila Shin, went to medical school (Yonsei Univ.)<br /> **2. Yoonkyung Ko<br /> **3. Sangyo Park, went to law school (Kyounghee Univ.)<br /> **4. Jayoon Shin, went to medical school (Pusan National Univ.)<br /> **5. Dongjoo Sun, went to dental school (Wongwang Univ.)<br /> **6. Eulsoo Kim<br /> **7. Myungwhan Lee, went to medical school (Yonsei Univ.)<br /> **8. Moonhee Lee, went to graduate school (University of Amsterdam, Netherlands)<br /> **9. Jinhyun Ju, went to graduate school (Cornell Medical School, Computational Systems Biology); Currently Principal Computational Biologist, Cancer Genomics at [https://bridgebio.com/ BridgeBio Pharma], Seattle, USA (미 바이오기업 선임연구원)<br /> **10. Haeyoung Shin, went to graduate school (Brown University, Computational Neuroscience)<br /> **11. Joonghee Soh, went to graduate school (KAIST, Culture Technology)<br /> **12. Hee Jung Cho, went to graduate school (UC Berkeley) <br /> **13. TaeHwan Kim, went to medical school<br /> **14. Joohyung Kim, went to medical school (Kyungpook National Univ.)<br /> **15. Donghyun Shin, went to medical school (Yonsei Univ.)<br /> **16. Byunghee Kang (2015 spring - 2016 summer), went to graduate school (PosTech)<br /> **17. Sunphil Kim (2016 winter)<br /> **18. Jaeho Shim (2016 winter)<br /> **19. Seunghyun Shin (2016 spring)<br /> **20. Aejoo Hong (2016 spring)<br /> **21. Changbae Bang (2016 summer), went to medical school (Yonsei Univ.)<br /> **22. Seoyoung Choi (2016 summer)<br /> **23. Dabin Jung (2016 summer)<br /> **24. Boreum Nam (2016 summer)<br /> **25. Seungun Lee (2016 summer)<br /> **26. Yeaji Kim (2016 summer and fall)<br /> **27. Sangyoung Lee (2017 winter)<br /> **28. Heejun Jang (2017 winter &amp; spring), went to KIST as Research Assistant<br /> **29. Jungha Lee (2017 summer), went to graduate school (Seoul National Univ.)<br /> **30. Seunghyun Wang (2017 summer), went to graduate school (KAIST)<br /> **31. Dong-Min Yang (2017 fall)<br /> **32. Doo-Hee Lee (2017 fall)<br /> **33. Suk-Jae Han (2018 winter)<br /> **34. Ji-Eun Han (2018 winter)<br /> **35. Yuri Ko (2018 spring)<br /> **36. Sung-Woo Kim (2018 spring)<br /> **37. Woosung Kwon (2018 summer)<br /> **38. Soyun Kong (2018 summer)<br /> **39. Hojeong Keum (2018 summer and fall)<br /> **40. Sungjun Lim (2018 summer and fall)<br /> **41. Jiyoon Lee (2018 summer and fall)<br /> **42. Ilseok Choi(2019 winter, spring, summer and fall, 2020 winter, spring)<br /> **43. Junik Park (2019 winter)<br /> **44. Lee Yoo (2019 winter &amp; spring)<br /> **45. Yeonwha Kim (2019 winter &amp; spring)<br /> **46. Sohee Kim (2019 spring)<br /> **47. Juseong Lee (2019 spring)<br /> **48. Junyoung Yang (2019 spring &amp; summer)<br /> **49. Junyoung Ma (2019 summer, 2020 winter, summer, fall, 2021 winter)<br /> **50. Dayun Jung (2019 summer)<br /> **51. Hanjoon Kim (2019 summer, 2021 winter)<br /> **52. Hyungjin Kim (2020 winter, spring)<br /> **53. Sujin Hyun (2020 winter)<br /> **54. Hyuki Lee (2020 winter)<br /> **55. Donghwan Lee (2020 winter)<br /> **56. Junhyung Cha (2020 spring, summer)<br /> **57. Jiwon Yu (2020 summer, 2021 Spring, summer)<br /> **58. Dong Seok Kim (2020 summer)<br /> **59. Donggeun Lee (2020 summer)<br /> **60. Sehun Ahn (2020 summer, 2021 winter, spring, summer, 2022 winter)<br /> **61. Jiho Kim (2020 summer)<br /> **62. Euijung Seong (2020 fall, 2021 spring, summer)<br /> **63. Junhan Kim (2021 winter &amp; spring)<br /> **64. Suyong Choi (2021 winter)<br /> **65. Sujin Pyeon (2021 Spring)<br /> **66. Hyeon Hee Ji (2021 Spring)<br /> **67. Semin Kim (2021 Summer)<br /> **68. Su Hwan Kim (2021 Summer)<br /> **69. Yongbin Kim (2021 Summer)<br /> **70. Nan Park (2021 Summer)<br /> **71. Hoyong Jung (2021 Summer)<br /> **72. Ingyeong Koh (2021 Summer)<br /> **73. Jongbin Jeong (2022 Winter)<br /> **74. Sungchul Yang (2022 Winter, Spring, Summer)<br /> **75. Hyojung Lee (2022 Winter, Spring)<br /> **76. Jun Hyeong Kim (2022 Winter, Spring)<br /> **77. Young Ji Roh (2022 Spring, Summer)<br /> **78. Geon Koh (2022 Spring, Summer)<br /> **79. Hayoung Kang (2022 Summer)<br /> **80. Won Jong Kim (2022 Summer, Fall, 2023 Winter)<br /> **81. Christian Lee (2022 Summer)<br /> **82. Je Yun Kang (2022 Summer)<br /> **83. Sumin Lee (2022 Fall)<br /> **84. Jungyeon Kim (2022 Fall, 2023 Winter)</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5470 2021-03-03T07:29:28Z

<p>Junha92: /* Junha Cha */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Ph.D program''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single Cell Genomics<br /> ** Single-cell Network Biology<br /> ** Analysis of Clinical Immunotherapy Samples <br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell network biology for resolving cellular heterogeneity in human diseases. Exp Mol Med 52, 1798–1808 (2020). https://doi.org/10.1038/s12276-020-00528-0</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5469 2021-03-03T07:28:29Z

<p>Junha92: /* Publications */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Master's program student''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single Cell Genomics<br /> ** Single-cell Network Biology<br /> ** Analysis of Clinical Immunotherapy Samples <br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell network biology for resolving cellular heterogeneity in human diseases. Exp Mol Med 52, 1798–1808 (2020). https://doi.org/10.1038/s12276-020-00528-0</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5308 2020-08-29T04:38:33Z

<p>Junha92: /* Junha Cha */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|500px]]<br /> |<br /> *'''Master's program student''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single Cell Genomics<br /> ** Single-cell Network Biology<br /> ** Analysis of Clinical Immunotherapy Samples <br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell Network Biology for Resolving Heterogeneity in Human Diseases, Under Review</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5306 2020-08-28T11:11:16Z

<p>Junha92: /* Junha Cha */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|300px]]<br /> |<br /> *'''Master's program student''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> <br /> e-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single Cell Genomics<br /> ** Single-cell Network Biology<br /> ** Analysis of Clinical Immunotherapy Samples <br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball<br /> ** Diving, Travelling<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell Network Biology for Resolving Heterogeneity in Human Diseases, Under Review</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5305 2020-08-28T10:59:01Z

<p>Junha92: /* Junha Cha */</p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha ProfilePic2.jpg|300px]]<br /> |<br /> *'''Master's program student''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> E-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single Cell Genomics<br /> ** Construction of Functional Gene Network from scRNA-seq Data<br /> ** Analysis of Clinical Immunotherapy Samples <br /> <br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball, Travelling<br /> ** Diving<br /> |}<br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell Network Biology for Resolving Heterogeneity in Human Diseases, Under Review</div>

Junha92 https://netbiolab.org/wiki/index.php?title=File:Junha_ProfilePic2.jpg&diff=5304 2020-08-28T10:58:20Z

<p>Junha92: </p> <hr /> <div></div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:Junhyeong_Cha&diff=5303 2020-08-28T09:42:54Z

<p>Junha92: Created page with &quot;===Junhyeong Cha=== {| |[[]] | *'''Master's program student''' (2020~), Department of Biotechnology, Yonsei University *'''B.S.''' (2013-2019), Division of Biotechnology, Kore...&quot;</p> <hr /> <div>===Junhyeong Cha===<br /> {|<br /> |[[]]<br /> |<br /> *'''Master's program student''' (2020~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2013-2019), Division of Biotechnology, Korea University<br /> E-mail: junhyungcha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Metagenomics <br /> <br /> <br /> * '''Hobby'''<br /> ** Playing guitars<br /> |}</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People&diff=5302 2020-08-28T09:40:53Z

<p>Junha92: /* Graduate Student */</p> <hr /> <div>__NOTOC__<br /> =='''Principal Investigator'''==<br /> {|border=&quot;0&quot; width=&quot;150&quot;<br /> |align=&quot;center&quot;|[[File:이인석-2011사진.jpg|90px|link=people:IS_Lee]]<br /> |-<br /> |align=&quot;center&quot;|[[people:IS_Lee|&lt;big&gt;'''Insuk Lee'''&lt;/big&gt;]]<br /> |-<br /> |}<br /> <br /> =='''Postdoc Fellow &amp; Research Staff'''==<br /> {|border=&quot;0&quot; width=&quot;400&quot;<br /> |align=&quot;center&quot; |[[File:People_KSKim.jpg|70px|link=people:KS_Kim]]<br /> |align=&quot;center&quot;|[[File:Smyang.jpg|70px|link=people:SM_Yang]]<br /> |align=&quot;center&quot;|[[File:SYLee.jpg|70px|link=people:SY_Lee]]<br /> |-<br /> |align=&quot;center&quot;|[[people:KS_Kim|&lt;big&gt;'''Kyungsoo Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[people:SM_Yang|&lt;big&gt;'''Sunmo Yang'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[people:SY_Lee|&lt;big&gt;'''Sangyoung Lee'''&lt;/big&gt;]]<br /> |-<br /> |align=&quot;center&quot;|[[people:KS_Kim|Postdoc Fellow&lt;br/&gt;]]<br /> |align=&quot;center&quot;|[[people:SM_Yang|Bioinformatics&lt;br/&gt;Programmer&lt;br/&gt;&amp; Sys. Admin]]<br /> |align=&quot;center&quot;|[[people:SY_Lee|Senior&lt;br/&gt;Research Assistant]]<br /> |}<br /> <br /> =='''Graduate Student'''==<br /> {|border=&quot;0&quot; width=&quot;700&quot;<br /> |align=&quot;center&quot;|[[File:cykim.PNG|70px|link=People:CY_Kim]]<br /> |align=&quot;center&quot;|[[File:Cho_JW.png|70px|link=People:J_Cho]]<br /> |align=&quot;center&quot;|[[File:2019_sungho.png|70px|link=People:S_Lee]]<br /> |align=&quot;center&quot;|[[File:Junha_Cha_profile2.png|70px|link=People:JH_Cha]]<br /> |align=&quot;center&quot;|[[File:나연.png|70px|link=People:NY_Kim]]<br /> |align=&quot;center&quot;|[[File:Bsb pic 2.jpg|70px|link=People:SB_Baek]]<br /> |-<br /> |align=&quot;center&quot;|[[People:CY Kim|&lt;big&gt;'''Chan Yeong Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:J_Cho|&lt;big&gt;'''Jae-Won Cho'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:S_Lee|&lt;big&gt;'''Sungho Lee'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|&lt;big&gt;'''Junha Cha'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|&lt;big&gt;'''Nayeon Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|&lt;big&gt;'''Seungbyn Baek'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:IS_Choi|&lt;big&gt;'''Ilseok Choi'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:Junhyeong_Cha|&lt;big&gt;'''Junhyeong Cha'''&lt;/big&gt;]]<br /> |-<br /> |align=&quot;center&quot;|[[people:CY Kim|Ph.D candidate&lt;br/&gt;(2015.3 - )]]<br /> |align=&quot;center&quot;|[[people:J_Cho|Ph.D candidate&lt;br/&gt;(2016.9 - )]]<br /> |align=&quot;center&quot;|[[People:S_Lee|Ph.D candidate&lt;br/&gt;(2017.3 - )]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|Master's course&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|Master's course&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|Master's course&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:IS_Choi|Ph.D's course&lt;br/&gt;(2020.9 - )]]<br /> |align=&quot;center&quot;|[[People:Junhyeong_Cha|Master's course&lt;br/&gt;(2020.9 - )]]<br /> |}<br /> <br /> =='''Undergraduate Student'''==<br /> *Junyeong Ma<br /> *Euijung Seong<br /> <br /> =='''Alumni'''==<br /> *'''Former Post-docs and Staff Scientists'''<br /> **Taeyun Oh (2009.5-2011.12), currently Deputy Principal Consultant (인실리코젠 생명정보분석컨설턴트), [http://www.insilicogen.com INSILICOGEN], Korea <br /> **Sohyun Hwang (2010.3-2015.8), currently Assistant Professor (차의과대학 의과학과 교수), [http://bt.cha.ac.kr/ Department of Biomedical Science, CHA University], Korea <br /> **Samuel Beck (2011.2-2011.12), currently Assistant Professor of Computational Biology, The Mount Desert Island Biological Laboratory, Maine, USA (미국 MDI 생명과학연구소 교수), [https://mdibl.org/faculty/sam-beck-ph-d/ Lab Homepage]<br /> **Jawon Song (2011.1-2012.5), currently Research Associate (미국 텍사스슈퍼컴퓨팅센터 선임연구원), [https://www.tacc.utexas.edu/about/directory/jawon-song Texas Advanced Computing Center], Austin, TX, USA<br /> **Yoonhee Ko (2012.8-2014.2), currently Assistant Professor (한국외국어대 바이오공학과 교수), [http://bme.hufs.ac.kr/ Department of Biomedical Engineering, Hankuk University of Foreign Studies], Korea <br /> **Jonghoon Lee (2013.10-2014.2), currently Assistant Professor (차의과대학 식품생명공학과 교수), [http://fsb.cha.ac.kr/ Department of Food Science and Biotechnology, CHA University], Korea <br /> **Jung Eun Shim (2009.8-2017.11), currently Researcher at Yonsei Genomics Center Bioinformatics Data Analysis Core (연세의료원 유전체센터 생명정보분석코어 선임연구원)<br /> <br /> *'''Former Graduate Students (Ph.D)'''<br /> **Junha Shin (2008.9-2014.2), PhD; currently Postdoc Fellow, University of Wisconsin-Madison (미국 위스콘신주립대 박사후연구원), USA [https://roylab.discovery.wisc.edu/ Roy Lab]<br /> **Hanhae Kim (2008.9-2015.2), PhD; currently Associate Research Fellow (한국과학기술기획평가원 부연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Ara Cho (2008.9-2015.2), PhD; currently Associate Research Fellow (한국과학기술기획평가원 부연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Eiru Kim (2010.9-2016.8), PhD; currently Postdoc Fellow, MD Anderson Cancer Center, Texas, USA (미국 엠디앤더슨암센터 박사후연구원) [http://www.hart-lab.org/ Hart Lab]<br /> **Tak Lee (2011.3-2017.2), PhD; currently Postdoc Fellow, Sainsbury Laboratory at University of Cambridge, UK (영국 케임브리지대학 박사후연구원) [https://www.slcu.cam.ac.uk/research/oldroyd-group Oldroyd Lab] [https://www.slcu.cam.ac.uk/research/ahnert-group Ahnert Lab]<br /> **Heonjong Han (2011.3~2019.8), PhD; currently Bioinformatics engineer at [https://3billion.io/ 3billion]<br /> <br /> *'''Former Graduate Students (Master's degree)'''<br /> **Sun-Gou Ji (2009.9-2011.8), M.Eng.; PhD from University of Cambridge (Sanger Genome center); currently Associate Director, Statistical Genetics at [https://bridgebio.com/ BridgeBio], USA<br /> **Hyojin Kim (2013.3-2015.2), M.Eng.; currently Bioinformatics Scientist, Aachen University, Germany <br /> **Hongseok Shim (2013.9-2015.8), M.Eng.; currently PhD student, Arizona State University, Biomedical Informatics program<br /> **Sunmo Yang (2014.9-2017.2), M.Eng. currently Bioinformatics programmer, Yonsei University<br /> **Muyoung Lee (2016.3-2018.2), M.Eng. currently PhD student, University of Texas at Austin, Cellular and Molecular Biology Program<br /> <br /> *'''Former Visiting Scientists/Students'''<br /> **Minkyung Shin (2012.3-2012.7), went to University of Southern California graduate school<br /> **Paul Chung (2012 summer), currently E-Commerce Analyst/Coordinator at [http://www.riotgames.com/ Riot Games], USA<br /> **Hyunjin Cho (2014 summer), currently Bioinformatics research assistant at [http://www.libd.org/ The Lieber Institute for Brain Development | LIBD], USA<br /> **Michael Chung (2016.8-2016.12), currently work at [https://www.facebook.com/ Facebook], USA<br /> <br /> *'''Former Undergraduate Students'''<br /> **Ila Shin, went to medical school (Yonsei Univ.)<br /> **Yoonkyung Ko<br /> **Sangyo Park, went to law school (Kyounghee Univ.)<br /> **Jayoon Shin, went to medical school (Pusan National Univ.)<br /> **Dongjoo Sun, went to dental school (Wongwang Univ.)<br /> **Eulsoo Kim<br /> **Myungwhan Lee, went to medical school (Yonsei Univ.)<br /> **Moonhee Lee, went to graduate school (University of Amsterdam, Netherlands)<br /> **Jinhyun Ju, went to graduate school (Cornell Medical School, Computational Systems Biology); Currently Bioinformatics Scientist, [https://guardanthealth.com/ Guardant Health] San Diego, USA <br /> **Haeyoung Shin, went to graduate school (Brown University, Computational Neuroscience)<br /> **Joonghee Soh, went to graduate school (KAIST, Culture Technology)<br /> **Hee Jung Cho, went to graduate school (UC Berkeley) <br /> **TaeHwan Kim, went to medical school<br /> **Joohyung Kim, went to medical school (Kyungpook National Univ.)<br /> **Donghyun Shin, went to medical school (Yonsei Univ.)<br /> **Byunghee Kang (2015 spring - 2016 summer), went to graduate school (PosTech)<br /> **Sunphil Kim (2016 winter)<br /> **Jaeho Shim (2016 winter)<br /> **Seunghyun Shin (2016 spring)<br /> **Aejoo Hong (2016 spring)<br /> **Changbae Bang (2016 summer), went to medical school (Yonsei Univ.)<br /> **Seoyoung Choi (2016 summer)<br /> **Dabin Jung (2016 summer)<br /> **Boreum Nam (2016 summer)<br /> **Seungun Lee (2016 summer)<br /> **Yeaji Kim (2016 summer and fall)<br /> **Sangyoung Lee (2017 winter)<br /> **Heejun Jang (2017 winter &amp; spring), went to KIST as Research Assistant<br /> **Jungha Lee (2017 summer), went to graduate school (Seoul National Univ.)<br /> **Seunghyun Wang (2017 summer), went to graduate school (KAIST)<br /> **Dong-Min Yang (2017 fall)<br /> **Doo-Hee Lee (2017 fall)<br /> **Suk-Jae Han (2018 winter)<br /> **Ji-Eun Han (2018 winter)<br /> **Yuri Ko (2018 spring)<br /> **Sung-Woo Kim (2018 spring)<br /> **Woosung Kwon (2018 summer)<br /> **Soyun Kong (2018 summer)<br /> **Hojeong Keum (2018 summer and fall)<br /> **Sungjun Lim (2018 summer and fall)<br /> **Jiyoon Lee (2018 summer and fall)<br /> **Ilseok Choi(2019 winter, spring, summer and fall, 2020 winter, spring)<br /> **Junik Park (2019 winter)<br /> **Lee Yoo (2019 winter &amp; spring)<br /> **Yeonwha Kim (2019 winter &amp; spring)<br /> **Sohee Kim (2019 spring)<br /> **Juseong Lee (2019 spring)<br /> **Junyoung Yang (2019 spring &amp; summer)<br /> **Junyoung Ma (2019 summer, 2020 winter, summer, fall)<br /> **Dayun Jung (2019 summer)<br /> **Hanjoon Kim (2019 summer)<br /> **Hyungjin Kim (2020 winter, spring)<br /> **Sujin Hyun (2020 winter)<br /> **Hyuki Lee (2020 winter)<br /> **Donghwan Lee (2020 winter)<br /> **Junhyung Cha (2020 spring, summer)<br /> **Jiwon Yu (2020 summer)<br /> **Dong Seok Kim (2020 summer)<br /> **Donggeun Lee (2020 summer)<br /> **Sehun Ahn (2020 summer)<br /> **Jiho Kim (2020 summer)</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:IS_Choi&diff=5301 2020-08-28T09:39:14Z

<p>Junha92: Created page with &quot;===Ilseok Choi=== {| |[[]] | *'''Ph.D's program student''' (2020~), Department of Biotechnology, Yonsei University *'''B.S.''' (2016-2020), Department of Biotechnology, Yonsei...&quot;</p> <hr /> <div>===Ilseok Choi===<br /> {|<br /> |[[]]<br /> |<br /> *'''Ph.D's program student''' (2020~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2016-2020), Department of Biotechnology, Yonsei University<br /> E-mail: choiismath@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single Cell Genomics<br /> ** Analysis of clinical cancer<br /> ** scRNA-seq data <br /> <br /> <br /> * '''Favorite'''<br /> ** Draft Beer<br /> |}</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5300 2020-08-28T09:30:53Z

<p>Junha92: </p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha_Cha_profile.png|300px]]<br /> |<br /> *'''Master's program student''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> E-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single Cell Genomics<br /> ** Construction of Functional Gene Network from scRNA-seq Data<br /> ** Analysis of Clinical Immunotherapy Samples <br /> <br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball, Travelling<br /> ** Diving<br /> |}<br /> <br /> <br /> <br /> ==Publications==<br /> * '''Cha JH*''', Lee I**. Single-cell Network Biology for Resolving Heterogeneity in Human Diseases, Under Review</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People&diff=5299 2020-08-28T09:14:38Z

<p>Junha92: /* Graduate Student */</p> <hr /> <div>__NOTOC__<br /> =='''Principal Investigator'''==<br /> {|border=&quot;0&quot; width=&quot;150&quot;<br /> |align=&quot;center&quot;|[[File:이인석-2011사진.jpg|90px|link=people:IS_Lee]]<br /> |-<br /> |align=&quot;center&quot;|[[people:IS_Lee|&lt;big&gt;'''Insuk Lee'''&lt;/big&gt;]]<br /> |-<br /> |}<br /> <br /> =='''Postdoc Fellow &amp; Research Staff'''==<br /> {|border=&quot;0&quot; width=&quot;400&quot;<br /> |align=&quot;center&quot; |[[File:People_KSKim.jpg|70px|link=people:KS_Kim]]<br /> |align=&quot;center&quot;|[[File:Smyang.jpg|70px|link=people:SM_Yang]]<br /> |align=&quot;center&quot;|[[File:SYLee.jpg|70px|link=people:SY_Lee]]<br /> |-<br /> |align=&quot;center&quot;|[[people:KS_Kim|&lt;big&gt;'''Kyungsoo Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[people:SM_Yang|&lt;big&gt;'''Sunmo Yang'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[people:SY_Lee|&lt;big&gt;'''Sangyoung Lee'''&lt;/big&gt;]]<br /> |-<br /> |align=&quot;center&quot;|[[people:KS_Kim|Postdoc Fellow&lt;br/&gt;]]<br /> |align=&quot;center&quot;|[[people:SM_Yang|Bioinformatics&lt;br/&gt;Programmer&lt;br/&gt;&amp; Sys. Admin]]<br /> |align=&quot;center&quot;|[[people:SY_Lee|Senior&lt;br/&gt;Research Assistant]]<br /> |}<br /> <br /> =='''Graduate Student'''==<br /> {|border=&quot;0&quot; width=&quot;700&quot;<br /> |align=&quot;center&quot;|[[File:cykim.PNG|70px|link=People:CY_Kim]]<br /> |align=&quot;center&quot;|[[File:Cho_JW.png|70px|link=People:J_Cho]]<br /> |align=&quot;center&quot;|[[File:2019_sungho.png|70px|link=People:S_Lee]]<br /> |align=&quot;center&quot;|[[File:Junha_Cha_profile2.png|70px|link=People:JH_Cha]]<br /> |align=&quot;center&quot;|[[File:나연.png|70px|link=People:NY_Kim]]<br /> |align=&quot;center&quot;|[[File:Bsb pic 2.jpg|70px|link=People:SB_Baek]]<br /> |-<br /> |align=&quot;center&quot;|[[People:CY Kim|&lt;big&gt;'''Chan Yeong Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:J_Cho|&lt;big&gt;'''Jae-Won Cho'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:S_Lee|&lt;big&gt;'''Sungho Lee'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|&lt;big&gt;'''Junha Cha'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|&lt;big&gt;'''Nayeon Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|&lt;big&gt;'''Seungbyn Baek'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:IS_Choi|&lt;big&gt;'''Ilseok Choi'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|&lt;big&gt;'''Junhyeong Cha'''&lt;/big&gt;]]<br /> |-<br /> |align=&quot;center&quot;|[[people:CY Kim|Ph.D candidate&lt;br/&gt;(2015.3 - )]]<br /> |align=&quot;center&quot;|[[people:J_Cho|Ph.D candidate&lt;br/&gt;(2016.9 - )]]<br /> |align=&quot;center&quot;|[[People:S_Lee|Ph.D candidate&lt;br/&gt;(2017.3 - )]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|Master's course&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|Master's course&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|Master's course&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:IS_Choi|Ph.D's course&lt;br/&gt;(2020.9 - )]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|Master's course&lt;br/&gt;(2020.9 - )]]<br /> |}<br /> <br /> =='''Undergraduate Student'''==<br /> *Junyeong Ma<br /> *Euijung Seong<br /> <br /> =='''Alumni'''==<br /> *'''Former Post-docs and Staff Scientists'''<br /> **Taeyun Oh (2009.5-2011.12), currently Deputy Principal Consultant (인실리코젠 생명정보분석컨설턴트), [http://www.insilicogen.com INSILICOGEN], Korea <br /> **Sohyun Hwang (2010.3-2015.8), currently Assistant Professor (차의과대학 의과학과 교수), [http://bt.cha.ac.kr/ Department of Biomedical Science, CHA University], Korea <br /> **Samuel Beck (2011.2-2011.12), currently Assistant Professor of Computational Biology, The Mount Desert Island Biological Laboratory, Maine, USA (미국 MDI 생명과학연구소 교수), [https://mdibl.org/faculty/sam-beck-ph-d/ Lab Homepage]<br /> **Jawon Song (2011.1-2012.5), currently Research Associate (미국 텍사스슈퍼컴퓨팅센터 선임연구원), [https://www.tacc.utexas.edu/about/directory/jawon-song Texas Advanced Computing Center], Austin, TX, USA<br /> **Yoonhee Ko (2012.8-2014.2), currently Assistant Professor (한국외국어대 바이오공학과 교수), [http://bme.hufs.ac.kr/ Department of Biomedical Engineering, Hankuk University of Foreign Studies], Korea <br /> **Jonghoon Lee (2013.10-2014.2), currently Assistant Professor (차의과대학 식품생명공학과 교수), [http://fsb.cha.ac.kr/ Department of Food Science and Biotechnology, CHA University], Korea <br /> **Jung Eun Shim (2009.8-2017.11), currently Researcher at Yonsei Genomics Center Bioinformatics Data Analysis Core (연세의료원 유전체센터 생명정보분석코어 선임연구원)<br /> <br /> *'''Former Graduate Students (Ph.D)'''<br /> **Junha Shin (2008.9-2014.2), PhD; currently Postdoc Fellow, University of Wisconsin-Madison (미국 위스콘신주립대 박사후연구원), USA [https://roylab.discovery.wisc.edu/ Roy Lab]<br /> **Hanhae Kim (2008.9-2015.2), PhD; currently Associate Research Fellow (한국과학기술기획평가원 부연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Ara Cho (2008.9-2015.2), PhD; currently Associate Research Fellow (한국과학기술기획평가원 부연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Eiru Kim (2010.9-2016.8), PhD; currently Postdoc Fellow, MD Anderson Cancer Center, Texas, USA (미국 엠디앤더슨암센터 박사후연구원) [http://www.hart-lab.org/ Hart Lab]<br /> **Tak Lee (2011.3-2017.2), PhD; currently Postdoc Fellow, Sainsbury Laboratory at University of Cambridge, UK (영국 케임브리지대학 박사후연구원) [https://www.slcu.cam.ac.uk/research/oldroyd-group Oldroyd Lab] [https://www.slcu.cam.ac.uk/research/ahnert-group Ahnert Lab]<br /> **Heonjong Han (2011.3~2019.8), PhD; currently Bioinformatics engineer at [https://3billion.io/ 3billion]<br /> <br /> *'''Former Graduate Students (Master's degree)'''<br /> **Sun-Gou Ji (2009.9-2011.8), M.Eng.; PhD from University of Cambridge (Sanger Genome center); currently Associate Director, Statistical Genetics at [https://bridgebio.com/ BridgeBio], USA<br /> **Hyojin Kim (2013.3-2015.2), M.Eng.; currently Bioinformatics Scientist, Aachen University, Germany <br /> **Hongseok Shim (2013.9-2015.8), M.Eng.; currently PhD student, Arizona State University, Biomedical Informatics program<br /> **Sunmo Yang (2014.9-2017.2), M.Eng. currently Bioinformatics programmer, Yonsei University<br /> **Muyoung Lee (2016.3-2018.2), M.Eng. currently PhD student, University of Texas at Austin, Cellular and Molecular Biology Program<br /> <br /> *'''Former Visiting Scientists/Students'''<br /> **Minkyung Shin (2012.3-2012.7), went to University of Southern California graduate school<br /> **Paul Chung (2012 summer), currently E-Commerce Analyst/Coordinator at [http://www.riotgames.com/ Riot Games], USA<br /> **Hyunjin Cho (2014 summer), currently Bioinformatics research assistant at [http://www.libd.org/ The Lieber Institute for Brain Development | LIBD], USA<br /> **Michael Chung (2016.8-2016.12), currently work at [https://www.facebook.com/ Facebook], USA<br /> <br /> *'''Former Undergraduate Students'''<br /> **Ila Shin, went to medical school (Yonsei Univ.)<br /> **Yoonkyung Ko<br /> **Sangyo Park, went to law school (Kyounghee Univ.)<br /> **Jayoon Shin, went to medical school (Pusan National Univ.)<br /> **Dongjoo Sun, went to dental school (Wongwang Univ.)<br /> **Eulsoo Kim<br /> **Myungwhan Lee, went to medical school (Yonsei Univ.)<br /> **Moonhee Lee, went to graduate school (University of Amsterdam, Netherlands)<br /> **Jinhyun Ju, went to graduate school (Cornell Medical School, Computational Systems Biology); Currently Bioinformatics Scientist, [https://guardanthealth.com/ Guardant Health] San Diego, USA <br /> **Haeyoung Shin, went to graduate school (Brown University, Computational Neuroscience)<br /> **Joonghee Soh, went to graduate school (KAIST, Culture Technology)<br /> **Hee Jung Cho, went to graduate school (UC Berkeley) <br /> **TaeHwan Kim, went to medical school<br /> **Joohyung Kim, went to medical school (Kyungpook National Univ.)<br /> **Donghyun Shin, went to medical school (Yonsei Univ.)<br /> **Byunghee Kang (2015 spring - 2016 summer), went to graduate school (PosTech)<br /> **Sunphil Kim (2016 winter)<br /> **Jaeho Shim (2016 winter)<br /> **Seunghyun Shin (2016 spring)<br /> **Aejoo Hong (2016 spring)<br /> **Changbae Bang (2016 summer), went to medical school (Yonsei Univ.)<br /> **Seoyoung Choi (2016 summer)<br /> **Dabin Jung (2016 summer)<br /> **Boreum Nam (2016 summer)<br /> **Seungun Lee (2016 summer)<br /> **Yeaji Kim (2016 summer and fall)<br /> **Sangyoung Lee (2017 winter)<br /> **Heejun Jang (2017 winter &amp; spring), went to KIST as Research Assistant<br /> **Jungha Lee (2017 summer), went to graduate school (Seoul National Univ.)<br /> **Seunghyun Wang (2017 summer), went to graduate school (KAIST)<br /> **Dong-Min Yang (2017 fall)<br /> **Doo-Hee Lee (2017 fall)<br /> **Suk-Jae Han (2018 winter)<br /> **Ji-Eun Han (2018 winter)<br /> **Yuri Ko (2018 spring)<br /> **Sung-Woo Kim (2018 spring)<br /> **Woosung Kwon (2018 summer)<br /> **Soyun Kong (2018 summer)<br /> **Hojeong Keum (2018 summer and fall)<br /> **Sungjun Lim (2018 summer and fall)<br /> **Jiyoon Lee (2018 summer and fall)<br /> **Ilseok Choi(2019 winter, spring, summer and fall, 2020 winter, spring)<br /> **Junik Park (2019 winter)<br /> **Lee Yoo (2019 winter &amp; spring)<br /> **Yeonwha Kim (2019 winter &amp; spring)<br /> **Sohee Kim (2019 spring)<br /> **Juseong Lee (2019 spring)<br /> **Junyoung Yang (2019 spring &amp; summer)<br /> **Junyoung Ma (2019 summer, 2020 winter, summer, fall)<br /> **Dayun Jung (2019 summer)<br /> **Hanjoon Kim (2019 summer)<br /> **Hyungjin Kim (2020 winter, spring)<br /> **Sujin Hyun (2020 winter)<br /> **Hyuki Lee (2020 winter)<br /> **Donghwan Lee (2020 winter)<br /> **Junhyung Cha (2020 spring, summer)<br /> **Jiwon Yu (2020 summer)<br /> **Dong Seok Kim (2020 summer)<br /> **Donggeun Lee (2020 summer)<br /> **Sehun Ahn (2020 summer)<br /> **Jiho Kim (2020 summer)</div>

Junha92 https://netbiolab.org/wiki/index.php?title=Journal_Club&diff=5230 2020-06-02T01:38:27Z

<p>Junha92: </p> <hr /> <div>{|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2020-1st semester<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; stype=&quot;padding:.4em&quot; | Team<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2020/06/16<br /> |style=&quot;padding:.4em;&quot; rowspan=3|-<br /> |style=&quot;padding:.4em;&quot;|20-15<br /> |style=&quot;padding:.4em;&quot;|GE Ryu<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/32142650/ Complement Signals Determine Opposite Effects of B Cells in Chemotherapy-Induced Immunity]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-14<br /> |style=&quot;padding:.4em;&quot;|JW Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/30595452/ Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment Within Human Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-13<br /> |style=&quot;padding:.4em;&quot;|JW Seo<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/30388455/ A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/06/09<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-12<br /> |style=&quot;padding:.4em;&quot;|JY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31974247/ Single-cell Transcriptional Diversity Is a Hallmark of Developmental Potential]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-11<br /> |style=&quot;padding:.4em;&quot;|JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31675496/ Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/06/02<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-10<br /> |style=&quot;padding:.4em;&quot;|HY Seo<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/32103181/ Peripheral T Cell Expansion Predicts Tumour Infiltration and Clinical Response]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-9<br /> |style=&quot;padding:.4em;&quot;|KH Hong<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/30388456/ Defining T Cell States Associated With Response to Checkpoint Immunotherapy in Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/05/26<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-8<br /> |style=&quot;padding:.4em;&quot;|JY Seong<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31915379/ Rapid Non-Uniform Adaptation to Conformation-Specific KRAS(G12C) Inhibition]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-7<br /> |style=&quot;padding:.4em;&quot;|OY Min<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31959990/ Targeted Therapy Guided by Single-Cell Transcriptomic Analysis in Drug-Induced Hypersensitivity Syndrome: A Case Report]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/05/19<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-6<br /> |style=&quot;padding:.4em;&quot;|SN Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/32066951/ Distinct Microbial and Immune Niches of the Human Colon]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-5<br /> |style=&quot;padding:.4em;&quot;|DJ Park<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31375813/ Massively Parallel Single-Cell Chromatin Landscapes of Human Immune Cell Development and Intratumoral T Cell Exhaustion]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/05/12<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-4<br /> |style=&quot;padding:.4em;&quot;|SY Park<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/29434354/ Single-cell Gene Expression Reveals a Landscape of Regulatory T Cell Phenotypes Shaped by the TCR]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-3<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/30078704/ A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/04/28<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|20-2<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/32014031/ scAI: An Unsupervised Approach for the Integrative Analysis of Parallel Single-Cell Transcriptomic and Epigenomic Profiles]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-1<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31792411/ Single-cell Multiomic Analysis Identifies Regulatory Programs in Mixed-Phenotype Acute Leukemia]<br /> |-<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2019-2nd semester<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; stype=&quot;padding:.4em&quot; | Team<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/15<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-51<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303488 Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-50<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0722-6 Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/08<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-49<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41587-019-0206-z Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-48<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/739011v1 Assessment of computational methods for the analysis of single-cell ATAC-seq data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/01<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-47<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303026 Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-46<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307731 Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/24<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-45<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://genome.cshlp.org/content/early/2019/04/01/gr.243725.118 The accessible chromatin landscape of the murine hippocampus at single-cell resolution]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-44<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741830446X Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/17<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-43<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://science.sciencemag.org/content/365/6449/eaau4735 A sparse covarying unit that describes healthy and impaired human gut microbiota development]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-42<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307810 Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/10<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-41<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307329?via%3Dihub Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-40<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nbt.4042 Multiplexed droplet single-cell RNA-sequencing using natural genetic variation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/03<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-39<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S193131281930352X?via%3Dihub The Landscape of Genetic Content in the Gut and Oral Human Microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-38<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307755?via%3Dihub Benchmarking Metagenomics Tools for Taxonomic Classification]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2019<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/20<br /> |style=&quot;padding:.4em;&quot;|19-37<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/719088v1 Coexpression uncovers a unified single-cell transcriptomic landscape]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-36<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/586859v1 Single-cell interactomes of the human brain reveal cell-type specific convergence of brain disorders]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/08/14<br /> |style=&quot;padding:.4em;&quot;|19-35<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004075 Proportionality: a valid alternative to correlation for relative data]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-34<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41598-017-16520-0 propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-33<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41591-018-0157-9 Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/13<br /> |style=&quot;padding:.4em;&quot;|19-32<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41592-018-0254-1 A test metric for assessing single-cell RNA-seq batch correction]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-31<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419305598 Comprehensive Integration of Single-Cell Data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/08<br /> |style=&quot;padding:.4em;&quot;|19-30<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418313941 Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831242X High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/07<br /> |style=&quot;padding:.4em;&quot;|19-28<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/555557v1 A single-cell reference map for human blood and tissue T cell activation reveals functional states in health and disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-27<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831568X Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/30<br /> |style=&quot;padding:.4em;&quot;|19-26<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nm.4466 High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-25<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418311784 A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/23<br /> |style=&quot;padding:.4em;&quot;|19-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26006008 COMPASS identifies T-cell subsets correlated with clinical outcomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-23<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/ncomms14825 Sensitive detection of rare disease-associated cell subsets via representation learning]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/30<br /> |style=&quot;padding:.4em;&quot;|19-22<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936547 Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-21<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936548 Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-20<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30664783 Microbial network disturbances in relapsing refractory Crohn's disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/23<br /> |style=&quot;padding:.4em;&quot;|19-19<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30867587 New insights from uncultivated genomes of the global human gut microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30745586 A new genomic blueprint of the human gut microbiota]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-17<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30661755 Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/16<br /> |style=&quot;padding:.4em;&quot;|19-16<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29311644 Dynamics of metatranscription in the inflammatory bowel disease gut microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-15<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29335555 Metatranscriptome of human faecal microbial communities in a cohort of adult men.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/09<br /> |style=&quot;padding:.4em;&quot;|19-14<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30193113 Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-13<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30193112 Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/02<br /> |style=&quot;padding:.4em;&quot;|19-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30753825 Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30778252 Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/11<br /> |style=&quot;padding:.4em;&quot;|19-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30479382 Lineage tracking reveals dynamic relationships of T cells in colorectal cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30523328 Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/4<br /> |style=&quot;padding:.4em;&quot;|19-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942092 Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942094 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/28<br /> |style=&quot;padding:.4em;&quot;|19-6<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28319088 Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-5<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28622514 Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/3/21<br /> |style=&quot;padding:.4em;&quot;|19-4<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29988129 Phenotype molding of stromal cells in the lung tumor microenvironment.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787436 A single-cell molecular map of mouse gastrulation and early organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787437 The single-cell transcriptional landscape of mammalian organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/14<br /> |style=&quot;padding:.4em;&quot;|19-2<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29961579 Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29198524 Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2018<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/14<br /> |style=&quot;padding:.4em;&quot;|18-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+pan-cancer+analysis+of+enhancer+expression+in+nearly+9000+patient+samples A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Machine+learning+identifies+stemness+features+associated+with+oncogenic+dedifferentiation Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/07<br /> |style=&quot;padding:.4em;&quot;|18-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Developmental+and+oncogenic+programs+in+H3K27M+gliomas+dissected+by+single-cell+RNA-seq Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Chemoresistance+evolution+in+triple-negative+breast+cancer+delineated+by+single-cell+sequencing Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/31<br /> |style=&quot;padding:.4em;&quot;|18-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Mapping+human+pluripotent+stem+cell+differentiation+pathways+using+high+throughput+single-cell+RNA-sequencing Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+single-cell+RNA-seq+survey+of+the+developmental+landscape+of+the+human+prefrontal+cortex A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/24<br /> |style=&quot;padding:.4em;&quot;|18-6<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Single-cell+RNA+sequencing+identifies+celltype-specific+cis-eQTLs+and+co-expression+QTLs Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-5<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=FOCS%3A+a+novel+method+for+analyzing+enhancer+and+gene+activity+patterns+infers+an+extensive+enhancer-promoter+map FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer-promoter map.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/17<br /> |style=&quot;padding:.4em;&quot;|18-4<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29149608 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-3<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29610481 A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/10<br /> |style=&quot;padding:.4em;&quot;|18-2<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Inferring+regulatory+element+landscapes+and+transcription+factor+networks+from+cancer+methylomes Inferring regulatory element landscapes and transcription factor networks from cancer methylomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-1<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28129544 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2017<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/28<br /> |style=&quot;padding:.4em;&quot;|17-36<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28104840 Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-35<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27240091 Landscape of tumor-infiltrating T cell repertoire of human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/14<br /> |style=&quot;padding:.4em;&quot;|17-34<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2015/09/01/025908 The landscape of T cell infiltration in human cancer and its association with antigen presenting gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-33<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.08.052 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/07<br /> |style=&quot;padding:.4em;&quot;|17-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.tandfonline.com/doi/full/10.1080/2162402X.2016.1253654 Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-31<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.03.075 Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/31<br /> |style=&quot;padding:.4em;&quot;|17-30<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.02.065 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-29<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.019 Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/24<br /> |style=&quot;padding:.4em;&quot;|17-28<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.12.022 Systemic Immunity Is Required for Effective Cencer Immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-27<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.020 Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/17<br /> |style=&quot;padding:.4em;&quot;|17-26<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.018 Host and Environmental Factors Influencing Individual Human Cytokine Responses.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-25<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.017 A Functional Genomics Approach to Understand Variation in Cytokine Production in Humans.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/26<br /> |style=&quot;padding:.4em;&quot;|17-24<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2FNMETH.4177 Pooled CRISPR screening with single-cell transcriptome readout.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-23<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.039 Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/12<br /> |style=&quot;padding:.4em;&quot;|17-22<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.038 Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-21<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnbt.3569 Wishbone identifies bifurcating developmental trajectories from single-cell data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/05<br /> |style=&quot;padding:.4em;&quot;|17-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2017/02/21/110668 Reversed graph embedding resolves complex single-cell developmental trajectories.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-19<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnmeth.4150 Single-cell mRNA quantification and differential analysis with Census.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/29<br /> |style=&quot;padding:.4em;&quot;|17-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.060 Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-17<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26051941 Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/22<br /> |style=&quot;padding:.4em;&quot;|17-16<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27580035 Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-15<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27281220 Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/15<br /> |style=&quot;padding:.4em;&quot;|17-14<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1126%2Fscience.aad0501 Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-13<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26084335 Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/28<br /> |style=&quot;padding:.4em;&quot;|17-12<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27824113 A Comprehensive Characterization of the Function of LincRNAs in Transcriptional Regulation Through Long-Range Chromatin Interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-11<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27851969 Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/21<br /> |style=&quot;padding:.4em;&quot;|17-10<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/12/30/097451 Convergence of dispersed regulatory mutations predicts driver genes in prostate cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-09<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27723759 Chromatin structure-based prediction of recurrent noncoding mutations in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/07<br /> |style=&quot;padding:.4em;&quot;|17-08<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/17/088286 Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-07<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/28/090134 Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/31<br /> |style=&quot;padding:.4em;&quot;|17-06<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27912059 Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/24<br /> |style=&quot;padding:.4em;&quot;|17-05<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27851914 Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/01/17<br /> |style=&quot;padding:.4em;&quot;|17-04<br /> |style=&quot;padding:.4em;&quot;|HJ Han <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/25938943 Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-03<br /> |style=&quot;padding:.4em;&quot;|EB Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27306882 CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/10<br /> |style=&quot;padding:.4em;&quot;|17-02<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26527291 ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/03<br /> |style=&quot;padding:.4em;&quot;|17-01<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26287467 Single-cell messenger RNA sequencing reveals rare intestinal cell types]<br /> |-<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2016<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/27<br /> |style=&quot;padding:.4em;&quot;|2016-31<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25664528 Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/6<br /> |style=&quot;padding:.4em;&quot;|2016-30<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26299571 Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/29<br /> |style=&quot;padding:.4em;&quot;|2016-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24658644 The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/22<br /> |style=&quot;padding:.4em;&quot;|2016-28<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26887813 Classification of low quality cells from single-cell RNA-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/15<br /> |style=&quot;padding:.4em;&quot;|2016-27<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000487 Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/8<br /> |style=&quot;padding:.4em;&quot;|2016-26<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000488 Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/1<br /> |style=&quot;padding:.4em;&quot;|2016-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27426982 Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/25<br /> |style=&quot;padding:.4em;&quot;|2016-24<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27549193 Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/11<br /> |style=&quot;padding:.4em;&quot;|2016-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=sidespread+parainflammation Widespread parainflammation in human cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/27<br /> |style=&quot;padding:.4em;&quot;|2016-22<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27535533 Analysis of protein-coding genetic variation in 60,706 humans]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/20<br /> |style=&quot;padding:.4em;&quot;|2016-21<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> Functional characterization of somatic mutations in cancer using network-based inference of protein activity<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27322546 pubmed]<br /> [http://www.nature.com/ng/journal/v48/n8/full/ng.3593.html fulltext]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/13<br /> |style=&quot;padding:.4em;&quot;|2016-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=exploiting+single-cell+expression+to+characterize Exploiting single-cell expression to characterize co-expression replicability.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/6<br /> |style=&quot;padding:.4em;&quot;|2016-19<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26940869 Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/31<br /> |style=&quot;padding:.4em;&quot;|2016-18<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27264179 A Computational Drug Repositioning Approach for Targeting Oncogenic Transcription Factors]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/16<br /> |style=&quot;padding:.4em;&quot;|2016-17<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27309802 The landscape of accessible chromatin in mammalian preimplantation embryos]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/8<br /> |style=&quot;padding:.4em;&quot;|2016-16<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27064255 Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/1<br /> |style=&quot;padding:.4em;&quot;|2016-15<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27040498 Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/25<br /> |style=&quot;padding:.4em;&quot;|2016-14<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=integration+of+summary+data+from+gwas+and+eqtl+studies Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/18<br /> |style=&quot;padding:.4em;&quot;|2016-13<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23624555 Identification of transcriptional regulators in the mouse immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/8<br /> |style=&quot;padding:.4em;&quot;|2016-12<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26619012 Mapping the effects of drugs on the immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-11<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26186195 Elucidating compound mechanism of action by network perturbation analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/1<br /> |style=&quot;padding:.4em;&quot;|2016-10<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26854917 Integrative approaches for large-scale transcriptome-wide association studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-9<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26950747 Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/18<br /> |style=&quot;padding:.4em;&quot;|2016-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27013732 Survey of variation in human transcription factors reveals prevalent DNA binding changes]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-7<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26502339 Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/11<br /> |style=&quot;padding:.4em;&quot;|2016-6<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25171417 Predicting Cancer-specific vulnerability via data-driven detection of synthetic lethality]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-5<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23467089 Dynamic regulatory network controlling Th17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/4<br /> |style=&quot;padding:.4em;&quot;|2016-4<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25853550 Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-3<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26618344 Regulators of genetic risk of breast cancer identified by integrative network analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/4/27<br /> |style=&quot;padding:.4em;&quot;|2016-2<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26780608 A predictive computational framework for direct reprogramming between human cell types]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-1<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25126793 CellNet: Network biology applied to stem cell engineering]<br /> |}<br /> <br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2015<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/11<br /> |style=&quot;padding:.4em;&quot;|2015-55<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/24/2/340.long Improved exome prioritization of disease genes through cross-species phenotype comparison.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-54<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0002929714001128 Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/04<br /> |style=&quot;padding:.4em;&quot;|2015-53<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2656.html eXtasy: variant prioritization by genomic data fusion.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-52<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/21/9/1529.long A probabilistic disease-gene finder for personal genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/28<br /> |style=&quot;padding:.4em;&quot;|2015-51<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n12/full/ng.3141.html Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-50<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v28/n5/full/nbt.1630.html GREAT improves functional interpretation of cis-regulatory regions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/21<br /> |style=&quot;padding:.4em;&quot;|2015-49<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2832.html Functional annotation of noncoding sequence variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-48<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/15/10/480 FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/14<br /> |style=&quot;padding:.4em;&quot;|2015-47<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v12/n2/full/nmeth.3215.html Selecting causal genes from genome-wide association studies via functionally coherent subnetworks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-46<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2015/150119/ncomms6890/full/ncomms6890.html Biological interpretation of genome-wide association studies using predicted gene functions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/05/07<br /> |style=&quot;padding:.4em;&quot;|2015-45<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/140626/ncomms5212/full/ncomms5212.html Human symptoms-disease network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-44<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413010246 A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-43<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6224/1257601.long Uncovering disease-disease relationships through the incomplete interactome.]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/30<br /> |style=&quot;padding:.4em;&quot;|2015-42<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/142.long The discovery of integrated gene networks for autism and related disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-41<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/12/774.long Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/04/23<br /> |style=&quot;padding:.4em;&quot;|2015-40<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature13990.html Dissecting neural differentiation regulatory networks through epigenetic footprinting.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-39<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14221.html Cell-of-origin chromatin organization shapes the mutational landscape of cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-38<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14248.html Integrative analysis of 111 reference human epigenomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/09<br /> |style=&quot;padding:.4em;&quot;|2015-37<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/246.long Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-36<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014974 A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/02<br /> |style=&quot;padding:.4em;&quot;|2015-35<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v14/n6/full/nrg3454.html Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-34<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6225/1010.long Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/26<br /> |style=&quot;padding:.4em;&quot;|2015-33<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/257.long Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/41.long Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/19<br /> |style=&quot;padding:.4em;&quot;|2015-31<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3154.html Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-30<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v16/n3/full/nrg3833.html Computational and analytical challenges in single-cell transcriptomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/12<br /> |style=&quot;padding:.4em;&quot;|2015-29<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867415000136 Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-28<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v500/n7464/full/nature12506.html Richness of human gut microbiome correlates with metabolic markers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-27<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v490/n7418/full/nature11450.html A metagenome-wide association study of gut microbiota in type 2 diabetes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/09<br /> |style=&quot;padding:.4em;&quot;|2015-26<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326 Practical guidelines for the comprehensive analysis of ChIP-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-25<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/5/777.long Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-24<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/11/760.long Rapid neurogenesis through transcriptional activation in human stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/02<br /> |style=&quot;padding:.4em;&quot;|2015-23<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414011787 Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-22<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004237 Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v45/n6/full/ng.2653.html The Genotype-Tissue Expression (GTEx) project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/24<br /> |style=&quot;padding:.4em;&quot;|2015-20<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/346/6212/1007.long Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-19<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13985.html Principles of regulatory information conservation between mouse and human.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-18<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13972.html Conservation of trans-acting circuitry during mammalian regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/16<br /> |style=&quot;padding:.4em;&quot;|2015-17<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13835.html Genetic and epigenetic fine mapping of causal autoimmune disease variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-16<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n3/full/ng.2892.html A general framework for estimating the relative pathogenicity of human genetic variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-15<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003825 A probabilistic model to predict clinical phenotypic traits from genome sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2015/02/02<br /> |style=&quot;padding:.4em;&quot;|2015-14<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/22/E2329.long Relating the metatranscriptome and metagenome of the human gut.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-13<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v513/n7516/full/nature13568.html Alterations of the human gut microbiome in liver cirrhosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-12<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2942.html An integrated catalog of reference genes in the human gut microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-11<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2939.html Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=5|2015/01/26<br /> |style=&quot;padding:.4em;&quot;|2015-10<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/9/1/666.long Computational meta'omics for microbial community studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-09<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/5/7/65 Functional profiling of the gut microbiome in disease-associated inflammation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-08<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S016895251200145X Biodiversity and functional genomics in the human microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-07<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002808 Chapter 12: Human Microbiome Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-06<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.cell.com/cell/abstract/S0092-8674%2814%2900864-2 Conducting a Microbiome Study.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/01/12<br /> |style=&quot;padding:.4em;&quot;|2015-05<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/141210/ncomms6522/full/ncomms6522.html Small RNA changes en route to distinct cellular states of induced pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-04<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14046.html Genome-wide characterization of the routes to pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-03<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14047.html Divergent reprogramming routes lead to alternative stem-cell states.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/01/05<br /> |style=&quot;padding:.4em;&quot;|2015-02<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/21/E2191.long Global view of enhancer-promoter interactome in human cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-01<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://nar.oxfordjournals.org/content/41/22/10391.long Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2014<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/23<br /> |style=&quot;padding:.4em;&quot;|2014-41<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413012270 Super-enhancers in the control of cell identity and disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-40<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413003929 Master transcription factors and mediator establish super-enhancers at key cell identity genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2014/12/09<br /> |style=&quot;padding:.4em;&quot;|2014-39<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414013713 Unraveling the biology of a fungal meningitis pathogen using chemical genetics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-38<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014226 A proteome-scale map of the human interactome network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-37<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/9/752.long The role of the interactome in the maintenance of deleterious variability in human populations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-36<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/342/6154/1235587.long Integrative annotation of variants from 1092 humans: application to cancer genomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/02<br /> |style=&quot;padding:.4em;&quot;|2014-35<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/8/1319.long Mapping functional transcription factor networks from gene expression data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-34<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v15/n7/full/nrg3684.html In pursuit of design principles of regulatory sequences.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/25<br /> |style=&quot;padding:.4em;&quot;|2014-33<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/3/6/36 Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-32<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S009286741300891X Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/18<br /> |style=&quot;padding:.4em;&quot;|2014-31<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/6/8/64 The 'dnet' approach promotes emerging research on cancer patient survival.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-30<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414010368 Determination and inference of eukaryotic transcription factor sequence specificity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/11/11<br /> |style=&quot;padding:.4em;&quot;|2014-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/110/16/6412.long Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-28<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009350 Dissecting engineered cell types and enhancing cell fate conversion via CellNet.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-27<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009349 CellNet: network biology applied to stem cell engineering.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/04<br /> |style=&quot;padding:.4em;&quot;|2014-26<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009775 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-25<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n9/full/nmeth.3046.html Phen-Gen: combining phenotype and genotype to analyze rare disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/10/28<br /> |style=&quot;padding:.4em;&quot;|2014-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-23<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n9/full/ng.3051.html Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/30<br /> |style=&quot;padding:.4em;&quot;|2014-22<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2651.html Network-based stratification of tumor mutations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-21<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414001457 Synonymous mutations frequently act as driver mutations in human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/23<br /> |style=&quot;padding:.4em;&quot;|2014-20<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003460 VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-19<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/13/12/R124 DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/16<br /> |style=&quot;padding:.4em;&quot;|2014-18<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/14/5/R52 Integrated analysis of recurrent properties of cancer genes to identify novel drivers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-17<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/4/11/89 Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/02<br /> |style=&quot;padding:.4em;&quot;|2014-16<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23228031 A network module-based method for identifying cancer prognostic signatures.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-15<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24429628 Realizing the promise of cancer predisposition genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/19<br /> |style=&quot;padding:.4em;&quot;|2014-14<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24952901 Assessing the clinical utility of cancer genomic and proteomic data across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-13<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24132290 Mutational landscape and significance across 12 major cancer types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/12<br /> |style=&quot;padding:.4em;&quot;|2014-12<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23945592 Signatures of mutational processes in human cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-11<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24390350 Discovery and saturation analysis of cancer genes across 21 tumour types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/05<br /> |style=&quot;padding:.4em;&quot;|2014-10<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24084849 Comprehensive identification of mutational cancer driver genes across 12 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-9<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24037244 IntOGen-mutations identifies cancer drivers across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/29<br /> |style=&quot;padding:.4em;&quot;|2014-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23900255 Computational approaches to identify functional genetic variants in cancer genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-7<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23770567 Mutational heterogeneity in cancer and the search for new cancer-associated genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-6<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n4/abs/nmeth.2891.html Cancer genomes: discerning drivers from passengers]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/22<br /> |style=&quot;padding:.4em;&quot;|2014-5<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24071849 The Cancer Genome Atlas Pan-Cancer analysis project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-4<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23539594 Cancer genome landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-3<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=21900272 Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/07/15<br /> |style=&quot;padding:.4em;&quot;|2014-2<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670764 A promoter-level mammalian expression atlas.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-1<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670763 An atlas of active enhancers across human cell types and tissues.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2013<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/26<br /> |style=&quot;padding:.4em;&quot;|2013-31<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://nar.oxfordjournals.org/content/40/16/7690.long Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-30<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n4/full/nbt.2519.html Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/04<br /> |style=&quot;padding:.4em;&quot;|2013-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[https://www.cell.com/abstract/S0092-8674(13)00439-X Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-28<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n3/full/nbt.2514.html Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/28<br /> |style=&quot;padding:.4em;&quot;|2013-27<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.pnas.org/content/102/38/13544.long Discovering statistically significant pathways in expression profiling studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-26<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0058977 Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/21<br /> |style=&quot;padding:.4em;&quot;|2013-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v496/n7446/full/nature11981.html Dynamic regulatory network controlling TH17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-24<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/14<br /> |style=&quot;padding:.4em;&quot;|2013-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-22<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|'''2013/05/07'''<br /> |style=&quot;padding:.4em;&quot;|2013-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-20<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/09<br /> |style=&quot;padding:.4em;&quot;|2013-19<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/02<br /> |style=&quot;padding:.4em;&quot;|2013-18<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot; |2013/03/12<br /> |style=&quot;padding:.4em;&quot;|2013-17<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/03/05<br /> |style=&quot;padding:.4em;&quot;|2013-16<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/21<br /> |style=&quot;padding:.4em;&quot;|2013-15<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-14<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-13<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/15<br /> |style=&quot;padding:.4em;&quot;|2013-12<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-11<br /> |style=&quot;padding:.4em;&quot;| JE Shim, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-10<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/08<br /> |style=&quot;padding:.4em;&quot;|2013-09<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-08<br /> |style=&quot;padding:.4em;&quot;|JE Shim, CY Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-07<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/01/25<br /> |style=&quot;padding:.4em;&quot;|2013-06<br /> |style=&quot;padding:.4em;&quot;|HJ Han, '''JH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-05<br /> |style=&quot;padding:.4em;&quot;|'''ER Kim''', HS Shim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-04<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/01/18<br /> |style=&quot;padding:.4em;&quot;|2013-03<br /> |style=&quot;padding:.4em;&quot;|KS Kim, '''TH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-02<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/01/11<br /> |style=&quot;padding:.4em;&quot;|2013-01<br /> |style=&quot;padding:.4em;&quot;| '''JE Shim''', CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]<br /> |}<br /> <br /> 2012<br /> {|border =&quot;1&quot;<br /> |style=&quot;color:black; background-color:#dcdcdc; padding:5px;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper title<br /> |-<br /> |rowspan = &quot;1&quot;|2013/01/11<br /> |align =&quot;center&quot;|2012-81<br /> |[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]<br /> |-<br /> |rowspan = &quot;1&quot;|2012/12/04<br /> |align =&quot;center&quot;|2012-80<br /> |[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/20<br /> | align=&quot;center&quot;|2012-79<br /> |[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]<br /> |-<br /> | align=&quot;center&quot;|2012-78<br /> |[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/06<br /> | align=&quot;center&quot;|2012-77<br /> |[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]<br /> |-<br /> | align=&quot;center&quot;|2012-76<br /> |[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] <br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/19<br /> | align=&quot;center&quot;|2012-75<br /> |[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]<br /> |-<br /> | align=&quot;center&quot;|2012-74 <br /> |[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] <br /> |-<br /> | align=&quot;center&quot;|2012-73<br /> |[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]<br /> |-<br /> | align=&quot;center&quot;|2012-72<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]<br /> |-<br /> | align=&quot;center&quot;|2012-71<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]<br /> |-<br /> | align=&quot;center&quot;|2012-70<br /> |[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]<br /> |-<br /> |rowspan = &quot;8&quot; |2012/07/16<br /> | align=&quot;center&quot;|2012-69<br /> |[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]<br /> |-<br /> | align=&quot;center&quot;|2012-66<br /> |[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;TH Kim)The Sequence Alignment/Map format and SAMtools]<br /> |-<br /> | align=&quot;center&quot;|2012-65<br /> |[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;TH Kim)The Variant Call Format and VCFtools]<br /> |-<br /> | align=&quot;center&quot;|2012-64<br /> |[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]<br /> |-<br /> |align=&quot;center&quot;|2012-63<br /> |[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-62<br /> |[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]<br /> |-<br /> |align=&quot;center&quot;|2012-61<br /> |[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]<br /> |-<br /> |align=&quot;center&quot;|2012-60<br /> |[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/07/13<br /> |align=&quot;center&quot;|2012-59<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]<br /> |-<br /> | align=&quot;center&quot;|2012-58<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;HJ Kim)A framework for human microbiome research]<br /> |-<br /> |align=&quot;center&quot;|2012-57<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]<br /> |-<br /> |rowspan = &quot;4&quot; |2012/07/12<br /> |align=&quot;center&quot;|2012-56<br /> |[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]<br /> |-<br /> |align=&quot;center&quot;|2012-55<br /> |[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]<br /> |-<br /> | align=&quot;center&quot;|2012-54<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-53<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/09<br /> |align=&quot;center&quot;|2012-52<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-51<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]<br /> |-<br /> | align=&quot;center&quot;|2012-50<br /> |[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]<br /> |-<br /> |align=&quot;center&quot;|2012-49<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]<br /> |-<br /> |align=&quot;center&quot;|2012-48<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]<br /> |-<br /> |align=&quot;center&quot;|2012-47<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/06<br /> | align=&quot;center&quot;|2012-46<br /> |[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]<br /> |-<br /> |align=&quot;center&quot;|2012-45<br /> |[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]<br /> |-<br /> |align=&quot;center&quot;|2012-44<br /> |[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]<br /> |-<br /> |align=&quot;center&quot;|2012-43<br /> |[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]<br /> |-<br /> | align=&quot;center&quot;|2012-42<br /> |[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]<br /> |-<br /> |align=&quot;center&quot;|2012-41<br /> |[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;KS Kim)Exome sequencing and the genetic basis of complex traits]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/02<br /> |align=&quot;center&quot;|2012-40<br /> |[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-39<br /> |[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;TH Kim)De novo discovery of mutated driver pathways in cancer]<br /> |-<br /> | align=&quot;center&quot;|2012-38<br /> |[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]<br /> |-<br /> |align=&quot;center&quot;|2012-37<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]<br /> |-<br /> |align=&quot;center&quot;|2012-36<br /> |[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]<br /> |-<br /> |align=&quot;center&quot;|2012-35<br /> |[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;HJ Kim)Detecting Novel Associations in Large Data Sets]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/03/05<br /> | align=&quot;center&quot;|2012-34<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]<br /> |-<br /> |align=&quot;center&quot;|2012-33<br /> |[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;Ju)Differential expression analysis for sequence count data]<br /> |-<br /> |align=&quot;center&quot;|2012-32<br /> |[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]<br /> |-<br /> |rowspan = &quot;7&quot; |2012/02/27&lt;br /&gt;2012/02/28<br /> | align=&quot;center&quot;|2012-31<br /> |[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]<br /> |-<br /> |align=&quot;center&quot;|2012-30<br /> |[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]<br /> |-<br /> |align=&quot;center&quot;|2012-29<br /> |[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]<br /> |-<br /> |align=&quot;center&quot;|2012-28<br /> |[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]<br /> |-<br /> |align=&quot;center&quot;|2012-27<br /> |[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]<br /> |-<br /> |align=&quot;center&quot;|2012-26<br /> |[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]<br /> |-<br /> |align=&quot;center&quot;|2012-25<br /> |[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;Shin)TopHat: discovering splice junctions with RNA-Seq]<br /> |-<br /> |rowspan = &quot;5&quot; |2012/02/06<br /> | align=&quot;center&quot;|2012-24<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]<br /> |-<br /> |align=&quot;center&quot;|2012-23<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]<br /> |-<br /> |align=&quot;center&quot;|2012-22<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]<br /> |-<br /> |align=&quot;center&quot;|2012-21<br /> |[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]<br /> |-<br /> |align=&quot;center&quot;|2012-20<br /> |[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]<br /> |-<br /> |rowspan = &quot;5&quot; |2012/01/30<br /> |align=&quot;center&quot;|2012-19<br /> |[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]<br /> |-<br /> |align=&quot;center&quot;|2012-18<br /> |[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]<br /> |-<br /> |align=&quot;center&quot;|2012-17<br /> |[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]<br /> |-<br /> |align=&quot;center&quot;|2012-16<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]<br /> |-<br /> |align=&quot;center&quot;|2012-15<br /> |[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/01/09<br /> |align=&quot;center&quot;|2012-14<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]<br /> |-<br /> |align=&quot;center&quot;|2012-13<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]<br /> |-<br /> |align=&quot;center&quot;|2012-12<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/01/09&lt;br /&gt;2012/01/16<br /> | align=&quot;center&quot;|2012-11<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]<br /> |-<br /> |align=&quot;center&quot;|2012-10<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]<br /> |-<br /> |align=&quot;center&quot;|2012-09<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]<br /> |-<br /> |align=&quot;center&quot;|2012-08<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]<br /> |-<br /> |align=&quot;center&quot;|2012-07<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]<br /> |-<br /> |align=&quot;center&quot;|2012-06<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/01/09&lt;br /&gt;2012/01/16<br /> |align=&quot;center&quot;|2012-05<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]<br /> |-<br /> |align=&quot;center&quot;|2012-04<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]<br /> |-<br /> |align=&quot;center&quot;|2012-03<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]<br /> |-<br /> |rowspan = &quot;2&quot; |2012/01/09&lt;br /&gt;2012/01/16<br /> |align=&quot;center&quot;|2012-02<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]<br /> |-<br /> |align=&quot;center&quot;|2012-01<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]<br /> |}<br /> 2011<br /> {|border =&quot;1&quot;<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_title<br /> |-<br /> |rowspan = &quot;6&quot; |2011/11/28<br /> |align=&quot;center&quot;|2011-49<br /> |[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]<br /> |-<br /> |align=&quot;center&quot;|2011-48<br /> |[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-47<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]<br /> |-<br /> |align=&quot;center&quot;|2011-46<br /> |[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]<br /> |-<br /> |align=&quot;center&quot;|2011-45<br /> |[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-44<br /> |[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]<br /> |-<br /> |rowspan = &quot;3&quot; |2011/11/14<br /> |align=&quot;center&quot;|2011-43<br /> |[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]<br /> |-<br /> |align=&quot;center&quot;|2011-42<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]<br /> |-<br /> |align=&quot;center&quot;|2011-41<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]<br /> |-<br /> |rowspan = &quot;4&quot; |2011/11/07<br /> |align=&quot;center&quot;|2011-40<br /> |[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]<br /> |-<br /> |align=&quot;center&quot;|2011-39<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]<br /> |-<br /> |align=&quot;center&quot;|2011-38<br /> |[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]<br /> |-<br /> |align=&quot;center&quot;|2011-37<br /> |[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]<br /> |-<br /> |rowspan = &quot;3&quot; |2011/11/07 <br /> |align=&quot;center&quot;|2011-36<br /> |[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]<br /> |-<br /> |align=&quot;center&quot;|2011-35<br /> |[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]<br /> |-<br /> |align=&quot;center&quot;|2011-34<br /> |[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]<br /> |-<br /> |rowspan = &quot;3&quot; |2011/10/05<br /> |align=&quot;center&quot;|2011-33<br /> |[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]<br /> |-<br /> |align=&quot;center&quot;|2011-32<br /> |[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]<br /> |-<br /> |align=&quot;center&quot;|2011-31<br /> |[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]<br /> |-<br /> |rowspan = &quot;4&quot; 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background-color:#dcdcdc;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_title<br /> |-<br /> |rowspan = &quot;2&quot;|2010/12/27<br /> |align=&quot;center&quot;|2010-29<br /> |[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]<br /> |-<br /> |align=&quot;center&quot;|2010-28<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]<br /> |-<br /> |rowspan = &quot;2&quot;|2010/11/15<br /> |align=&quot;center&quot;|2010-27<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]<br /> |-<br /> |align=&quot;center&quot;|2010-26<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B8JDC-50J4MRJ-2&amp;_user=44062&amp;_coverDate=10%2F10%2F2010&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]<br /> |-<br /> |rowspan = &quot;2&quot;|2010/11/01<br /> |align=&quot;center&quot;|2010-25<br /> |[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]<br /> |-<br /> |align=&quot;center&quot;|2010-24<br /> |[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]<br /> |-<br /> |2010/10/11<br /> |align=&quot;center&quot;|2010-23<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]<br /> |-<br /> |rowspan = &quot;2&quot;|2010/09/13<br /> |align=&quot;center&quot;|2010-22<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]<br /> |-<br /> |align=&quot;center&quot;|2010-21<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]<br /> |-<br /> |2010/05/26<br /> |align=&quot;center&quot;|2010-20<br /> |[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]<br /> |-<br /> |2010/05/19<br /> |align=&quot;center&quot;|2010-19<br /> |[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]<br /> |-<br /> |2010/04/21<br /> |align=&quot;center&quot;|2010-18<br /> |[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]<br /> |-<br /> |2010/04/14<br /> |align=&quot;center&quot;|2010-17<br /> |[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]<br /> |-<br /> |rowspan = &quot;2&quot; 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|<br /> |rowspan = &quot;6&quot; |January 9 Mon, 2012&lt;br&gt;January 16 Mon, 2012<br /> |rowspan = &quot;6&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]<br /> |-<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |January 9 Mon, 2012&lt;br&gt;January 16 Mon, 2012<br /> |rowspan = &quot;3&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |January 9 Mon, 2012&lt;br&gt;January 16 Mon, 2012<br /> |rowspan = &quot;2&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]<br /> |-<br /> |rowspan = &quot;6&quot; |<br /> |rowspan = &quot;6&quot; |November 28 Mon, 2011<br /> |rowspan = &quot;6&quot; | TY Oh, &lt;br&gt;<br /> SH Hwang, &lt;br&gt;<br /> JE Shim, &lt;br&gt;<br /> S Beck, &lt;br&gt;<br /> JH Shin<br /> |[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]<br /> |-<br /> |[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]<br /> |-<br /> |[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]<br /> |-<br /> |[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]<br /> |-<br /> |[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]<br /> |-<br /> |rowspan = &quot;3&quot; | <br /> |rowspan = &quot;3&quot; |November 14 Mon, 2011<br /> |rowspan = &quot;3&quot; | HH Kim &amp; AR Cho<br /> |[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]<br /> |-<br /> |rowspan = &quot;4&quot; | <br /> |rowspan = &quot;4&quot; |November 7 Mon, 2011<br /> |rowspan = &quot;4&quot; | YH Ko<br /> |[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]<br /> |-<br /> |[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]<br /> |-<br /> |[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]<br /> |-<br /> |rowspan = &quot;3&quot; | <br /> |rowspan = &quot;3&quot; |November 7 Mon, 2011<br /> |rowspan = &quot;3&quot; | JW Song<br /> |[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]<br /> |-<br /> |[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]<br /> |-<br /> |[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]<br /> |-<br /> |rowspan = &quot;3&quot; | <br /> |rowspan = &quot;3&quot; |October 5 Mon, 2011<br /> |rowspan = &quot;3&quot; | HH Kim<br /> |[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]<br /> |-<br /> |[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]<br /> |-<br /> |[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]<br /> |-<br /> |rowspan = &quot;4&quot; |<br /> |rowspan = &quot;4&quot; |October 4 Mon, 2011<br /> |rowspan = &quot;4&quot; | S Beck<br /> |[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]<br /> |-<br /> |[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html Molecular eco-systems biology: towards an understanding of community function]<br /> |-<br /> |[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]<br /> |-<br /> |[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |September 19 Mon, 2011<br /> |rowspan = &quot;2&quot; | TY Oh<br /> |[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]<br /> |-<br /> |[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]<br /> |-<br /> |rowspan = &quot;2&quot; | <br /> |rowspan = &quot;2&quot; |September 5 Mon, 2011<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]<br /> |-<br /> |SH Hwang<br /> |[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]<br /> |-<br /> |rowspan = &quot;2&quot; | <br /> |rowspan = &quot;2&quot; | August 22 Mon, 2011<br /> |ER Kim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]<br /> |-<br /> |<br /> |June 20 Mon, 2011<br /> |JH Shin<br /> |[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 30 Mon, 2011<br /> |rowspan = &quot;2&quot; | HH Kim<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]<br /> |-<br /> <br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 16 Mon, 2011<br /> |rowspan = &quot;2&quot; | AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]<br /> |-<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |April 25 Mon, 2011<br /> |rowspan = &quot;3&quot; |S Beck<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 11 Mon, 2011<br /> |JE Shim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]<br /> |-<br /> |T Lee<br /> |***Changed!***<br /> [http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 28 Mon, 2011<br /> |rowspan = &quot;2&quot;|TY Oh<br /> |[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 14 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6WSN-51SFHJD-1&amp;_user=44062&amp;_coverDate=01%2F07%2F2011&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;searchtype=a phenotypic landscape of a bacterial cell]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]<br /> |-<br /> <br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|February 28 Mon, 2011<br /> |KS Kim<br /> |[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]<br /> |-<br /> |HJ Han<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]<br /> |-<br /> |<br /> |February 21 Mon, 2011<br /> |MH Lee<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]<br /> |-<br /> |<br /> |February 14 Mon, 2011<br /> |AR Cho<br /> |[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|January 31 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]<br /> |-<br /> |[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot; | December 27 Mon, 2010<br /> |ER Kim<br /> |[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 15 Mon, 2010<br /> |AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]<br /> |-<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B8JDC-50J4MRJ-2&amp;_user=44062&amp;_coverDate=10%2F10%2F2010&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 1 Mon, 2010<br /> |HH Kim<br /> |[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]<br /> |-<br /> |JH Shin<br /> |[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]<br /> |-<br /> |<br /> |October 11 Mon, 2010<br /> |JE Shim<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]<br /> |-<br /> |<br /> |September 13 Mon, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]<br /> [http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]<br /> |-<br /> |<br /> |May 26 Wed, 2010<br /> |AR Cho<br /> |[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]<br /> |-<br /> |<br /> |May 19 Wed, 2010<br /> |SG Ji<br /> |[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]<br /> |-<br /> |<br /> |April 21 Wed, 2010<br /> |JH Shin<br /> |[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]<br /> |-<br /> |<br /> |April 14 Wed, 2010<br /> |TY Oh<br /> |[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 7 Wed, 2010<br /> |HHkim<br /> |<br /> [http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]<br /> |-<br /> |T Lee<br /> |<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]<br /> |-<br /> |<br /> |Mar 31 Wed, 2010<br /> |JE Shim<br /> |[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]<br /> [http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]<br /> |-<br /> |<br /> |Mar 24 Wed, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]<br /> |-<br /> |<br /> |Jan 18 Mon, 2010<br /> |TY Oh(T Lee)<br /> |JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies<br /> |-<br /> |<br /> |Jan 16 Sat, 2010<br /> |JE Shim(MH Lee)<br /> |systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells<br /> |-<br /> |<br /> |Jan 15 Fri, 2010<br /> |SG Ji<br /> |distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions<br /> |-<br /> |<br /> |Jan 14 Thu, 2010<br /> |HH kim<br /> |chemogenomic_profiling_predicts_antifungal_synergies<br /> |-<br /> |<br /> |Jan 13 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |edgetic_perturbation_models_of_human_inherited_disorders<br /> |-<br /> |<br /> |Jan 12 Tue, 2010<br /> |TY Oh(T Lee)<br /> |analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans<br /> |-<br /> |<br /> |Jan 11 Mon, 2010<br /> |JE Shim(MH Lee)<br /> |predicting_new_molecular_targets_for_known_drugs.pdf<br /> Reference:SEA(Similarity Ensemble Approach)<br /> |-<br /> |<br /> |Jan 09 Sat, 2010<br /> |SG Ji<br /> |harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance<br /> |-<br /> |<br /> |Jan 08 Fri, 2010<br /> |AR Cho<br /> |an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer<br /> |-<br /> |<br /> |Jan 07 Thu, 2010<br /> |HH Kim <br /> |a_phenotypic_profile_of_the_candida_albicans_regulatory_network<br /> |-<br /> |<br /> |Jan 06 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |a_global_view_of_protein_expression_in_human_cells_tissues_and_organs<br /> |}<br /> --&gt;</div>

Junha92 https://netbiolab.org/wiki/index.php?title=Journal_Club&diff=5224 2020-05-18T12:46:23Z

<p>Junha92: </p> <hr /> <div>{|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2020-1st semester<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; stype=&quot;padding:.4em&quot; | Team<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2020/06/16<br /> |style=&quot;padding:.4em;&quot; rowspan=3|-<br /> |style=&quot;padding:.4em;&quot;|20-15<br /> |style=&quot;padding:.4em;&quot;|GE Ryu<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/32142650/ Complement Signals Determine Opposite Effects of B Cells in Chemotherapy-Induced Immunity]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-14<br /> |style=&quot;padding:.4em;&quot;|JW Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/30595452/ Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment Within Human Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-13<br /> |style=&quot;padding:.4em;&quot;|JW Seo<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/30388455/ A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/06/09<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-12<br /> |style=&quot;padding:.4em;&quot;|JY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31974247/ Single-cell Transcriptional Diversity Is a Hallmark of Developmental Potential]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-11<br /> |style=&quot;padding:.4em;&quot;|JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31675496/ Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/06/02<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-10<br /> |style=&quot;padding:.4em;&quot;|HY Seo<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/32103181/ Peripheral T Cell Expansion Predicts Tumour Infiltration and Clinical Response]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-9<br /> |style=&quot;padding:.4em;&quot;|HK Hee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/30388456/ Defining T Cell States Associated With Response to Checkpoint Immunotherapy in Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/05/26<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-8<br /> |style=&quot;padding:.4em;&quot;|JY Seong<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31915379/ Rapid Non-Uniform Adaptation to Conformation-Specific KRAS(G12C) Inhibition]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-7<br /> |style=&quot;padding:.4em;&quot;|OY Min<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31959990/ Targeted Therapy Guided by Single-Cell Transcriptomic Analysis in Drug-Induced Hypersensitivity Syndrome: A Case Report]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/05/19<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-6<br /> |style=&quot;padding:.4em;&quot;|SN Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/32066951/ Distinct Microbial and Immune Niches of the Human Colon]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-5<br /> |style=&quot;padding:.4em;&quot;|DJ Park<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31375813/ Massively Parallel Single-Cell Chromatin Landscapes of Human Immune Cell Development and Intratumoral T Cell Exhaustion]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/05/12<br /> |style=&quot;padding:.4em;&quot; rowspan=2|-<br /> |style=&quot;padding:.4em;&quot;|20-4<br /> |style=&quot;padding:.4em;&quot;|SY Park<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/29434354/ Single-cell Gene Expression Reveals a Landscape of Regulatory T Cell Phenotypes Shaped by the TCR]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-3<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/30078704/ A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2020/04/28<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|20-2<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/32014031/ scAI: An Unsupervised Approach for the Integrative Analysis of Parallel Single-Cell Transcriptomic and Epigenomic Profiles]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|20-1<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://pubmed.ncbi.nlm.nih.gov/31792411/ Single-cell Multiomic Analysis Identifies Regulatory Programs in Mixed-Phenotype Acute Leukemia]<br /> |-<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2019-2nd semester<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; stype=&quot;padding:.4em&quot; | Team<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/15<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-51<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303488 Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-50<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0722-6 Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/08<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-49<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41587-019-0206-z Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-48<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/739011v1 Assessment of computational methods for the analysis of single-cell ATAC-seq data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/01<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-47<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303026 Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-46<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307731 Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/24<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-45<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://genome.cshlp.org/content/early/2019/04/01/gr.243725.118 The accessible chromatin landscape of the murine hippocampus at single-cell resolution]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-44<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741830446X Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/17<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-43<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://science.sciencemag.org/content/365/6449/eaau4735 A sparse covarying unit that describes healthy and impaired human gut microbiota development]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-42<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307810 Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/10<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-41<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307329?via%3Dihub Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-40<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nbt.4042 Multiplexed droplet single-cell RNA-sequencing using natural genetic variation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/03<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-39<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S193131281930352X?via%3Dihub The Landscape of Genetic Content in the Gut and Oral Human Microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-38<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307755?via%3Dihub Benchmarking Metagenomics Tools for Taxonomic Classification]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; 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rowspan=3|2019/08/14<br /> |style=&quot;padding:.4em;&quot;|19-35<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004075 Proportionality: a valid alternative to correlation for relative data]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-34<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41598-017-16520-0 propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-33<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41591-018-0157-9 Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/13<br /> |style=&quot;padding:.4em;&quot;|19-32<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41592-018-0254-1 A test metric for assessing single-cell RNA-seq batch correction]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-31<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419305598 Comprehensive Integration of Single-Cell Data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/08<br /> |style=&quot;padding:.4em;&quot;|19-30<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418313941 Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831242X High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/07<br /> |style=&quot;padding:.4em;&quot;|19-28<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/555557v1 A single-cell reference map for human blood and tissue T cell activation reveals functional states in health and disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-27<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831568X Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/30<br /> |style=&quot;padding:.4em;&quot;|19-26<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nm.4466 High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-25<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418311784 A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/23<br /> |style=&quot;padding:.4em;&quot;|19-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26006008 COMPASS identifies T-cell subsets correlated with clinical outcomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-23<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/ncomms14825 Sensitive detection of rare disease-associated cell subsets via representation learning]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/30<br /> |style=&quot;padding:.4em;&quot;|19-22<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936547 Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-21<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936548 Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-20<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30664783 Microbial network disturbances in relapsing refractory Crohn's disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/23<br /> |style=&quot;padding:.4em;&quot;|19-19<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30867587 New insights from uncultivated genomes of the global human gut microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30745586 A new genomic blueprint of the human gut microbiota]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-17<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30661755 Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; 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rowspan=2|2019/05/02<br /> |style=&quot;padding:.4em;&quot;|19-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30753825 Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30778252 Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/11<br /> |style=&quot;padding:.4em;&quot;|19-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30479382 Lineage tracking reveals dynamic relationships of T cells in colorectal cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30523328 Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/4<br /> |style=&quot;padding:.4em;&quot;|19-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942092 Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942094 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/28<br /> |style=&quot;padding:.4em;&quot;|19-6<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28319088 Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-5<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28622514 Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/3/21<br /> |style=&quot;padding:.4em;&quot;|19-4<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29988129 Phenotype molding of stromal cells in the lung tumor microenvironment.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787436 A single-cell molecular map of mouse gastrulation and early organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787437 The single-cell transcriptional landscape of mammalian organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/14<br /> |style=&quot;padding:.4em;&quot;|19-2<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29961579 Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29198524 Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2018<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/14<br /> |style=&quot;padding:.4em;&quot;|18-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+pan-cancer+analysis+of+enhancer+expression+in+nearly+9000+patient+samples A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Machine+learning+identifies+stemness+features+associated+with+oncogenic+dedifferentiation Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/07<br /> |style=&quot;padding:.4em;&quot;|18-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Developmental+and+oncogenic+programs+in+H3K27M+gliomas+dissected+by+single-cell+RNA-seq Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Chemoresistance+evolution+in+triple-negative+breast+cancer+delineated+by+single-cell+sequencing Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/31<br /> |style=&quot;padding:.4em;&quot;|18-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Mapping+human+pluripotent+stem+cell+differentiation+pathways+using+high+throughput+single-cell+RNA-sequencing Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+single-cell+RNA-seq+survey+of+the+developmental+landscape+of+the+human+prefrontal+cortex A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/24<br /> |style=&quot;padding:.4em;&quot;|18-6<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Single-cell+RNA+sequencing+identifies+celltype-specific+cis-eQTLs+and+co-expression+QTLs Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-5<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=FOCS%3A+a+novel+method+for+analyzing+enhancer+and+gene+activity+patterns+infers+an+extensive+enhancer-promoter+map FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer-promoter map.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/17<br /> |style=&quot;padding:.4em;&quot;|18-4<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29149608 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-3<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29610481 A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/10<br /> |style=&quot;padding:.4em;&quot;|18-2<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Inferring+regulatory+element+landscapes+and+transcription+factor+networks+from+cancer+methylomes Inferring regulatory element landscapes and transcription factor networks from cancer methylomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-1<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28129544 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2017<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/28<br /> |style=&quot;padding:.4em;&quot;|17-36<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28104840 Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-35<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27240091 Landscape of tumor-infiltrating T cell repertoire of human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/14<br /> |style=&quot;padding:.4em;&quot;|17-34<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2015/09/01/025908 The landscape of T cell infiltration in human cancer and its association with antigen presenting gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-33<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.08.052 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/07<br /> |style=&quot;padding:.4em;&quot;|17-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.tandfonline.com/doi/full/10.1080/2162402X.2016.1253654 Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-31<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.03.075 Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/31<br /> |style=&quot;padding:.4em;&quot;|17-30<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.02.065 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-29<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.019 Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/24<br /> |style=&quot;padding:.4em;&quot;|17-28<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.12.022 Systemic Immunity Is Required for Effective Cencer Immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-27<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.020 Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/17<br /> |style=&quot;padding:.4em;&quot;|17-26<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.018 Host and Environmental Factors Influencing Individual Human Cytokine Responses.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-25<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.017 A Functional Genomics Approach to Understand Variation in Cytokine Production in Humans.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/26<br /> |style=&quot;padding:.4em;&quot;|17-24<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2FNMETH.4177 Pooled CRISPR screening with single-cell transcriptome readout.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-23<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.039 Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/12<br /> |style=&quot;padding:.4em;&quot;|17-22<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.038 Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-21<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnbt.3569 Wishbone identifies bifurcating developmental trajectories from single-cell data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/05<br /> |style=&quot;padding:.4em;&quot;|17-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2017/02/21/110668 Reversed graph embedding resolves complex single-cell developmental trajectories.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-19<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnmeth.4150 Single-cell mRNA quantification and differential analysis with Census.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/29<br /> |style=&quot;padding:.4em;&quot;|17-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.060 Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-17<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26051941 Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/22<br /> |style=&quot;padding:.4em;&quot;|17-16<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27580035 Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-15<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27281220 Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/15<br /> |style=&quot;padding:.4em;&quot;|17-14<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1126%2Fscience.aad0501 Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-13<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26084335 Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/28<br /> |style=&quot;padding:.4em;&quot;|17-12<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27824113 A Comprehensive Characterization of the Function of LincRNAs in Transcriptional Regulation Through Long-Range Chromatin Interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-11<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27851969 Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/21<br /> |style=&quot;padding:.4em;&quot;|17-10<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/12/30/097451 Convergence of dispersed regulatory mutations predicts driver genes in prostate cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-09<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27723759 Chromatin structure-based prediction of recurrent noncoding mutations in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/07<br /> |style=&quot;padding:.4em;&quot;|17-08<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/17/088286 Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-07<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/28/090134 Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/31<br /> |style=&quot;padding:.4em;&quot;|17-06<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27912059 Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/24<br /> |style=&quot;padding:.4em;&quot;|17-05<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27851914 Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/01/17<br /> |style=&quot;padding:.4em;&quot;|17-04<br /> |style=&quot;padding:.4em;&quot;|HJ Han <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/25938943 Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-03<br /> |style=&quot;padding:.4em;&quot;|EB Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27306882 CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/10<br /> |style=&quot;padding:.4em;&quot;|17-02<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26527291 ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/03<br /> |style=&quot;padding:.4em;&quot;|17-01<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26287467 Single-cell messenger RNA sequencing reveals rare intestinal cell types]<br /> |-<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2016<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/27<br /> |style=&quot;padding:.4em;&quot;|2016-31<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25664528 Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/6<br /> |style=&quot;padding:.4em;&quot;|2016-30<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26299571 Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/29<br /> |style=&quot;padding:.4em;&quot;|2016-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24658644 The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/22<br /> |style=&quot;padding:.4em;&quot;|2016-28<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26887813 Classification of low quality cells from single-cell RNA-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/15<br /> |style=&quot;padding:.4em;&quot;|2016-27<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000487 Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/8<br /> |style=&quot;padding:.4em;&quot;|2016-26<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000488 Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/1<br /> |style=&quot;padding:.4em;&quot;|2016-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27426982 Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/25<br /> |style=&quot;padding:.4em;&quot;|2016-24<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27549193 Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/11<br /> |style=&quot;padding:.4em;&quot;|2016-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=sidespread+parainflammation Widespread parainflammation in human cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/27<br /> |style=&quot;padding:.4em;&quot;|2016-22<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27535533 Analysis of protein-coding genetic variation in 60,706 humans]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/20<br /> |style=&quot;padding:.4em;&quot;|2016-21<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> Functional characterization of somatic mutations in cancer using network-based inference of protein activity<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27322546 pubmed]<br /> [http://www.nature.com/ng/journal/v48/n8/full/ng.3593.html fulltext]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/13<br /> |style=&quot;padding:.4em;&quot;|2016-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=exploiting+single-cell+expression+to+characterize Exploiting single-cell expression to characterize co-expression replicability.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/6<br /> |style=&quot;padding:.4em;&quot;|2016-19<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26940869 Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/31<br /> |style=&quot;padding:.4em;&quot;|2016-18<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27264179 A Computational Drug Repositioning Approach for Targeting Oncogenic Transcription Factors]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/16<br /> |style=&quot;padding:.4em;&quot;|2016-17<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27309802 The landscape of accessible chromatin in mammalian preimplantation embryos]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/8<br /> |style=&quot;padding:.4em;&quot;|2016-16<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27064255 Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/1<br /> |style=&quot;padding:.4em;&quot;|2016-15<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27040498 Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/25<br /> |style=&quot;padding:.4em;&quot;|2016-14<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=integration+of+summary+data+from+gwas+and+eqtl+studies Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/18<br /> |style=&quot;padding:.4em;&quot;|2016-13<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23624555 Identification of transcriptional regulators in the mouse immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/8<br /> |style=&quot;padding:.4em;&quot;|2016-12<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26619012 Mapping the effects of drugs on the immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-11<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26186195 Elucidating compound mechanism of action by network perturbation analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/1<br /> |style=&quot;padding:.4em;&quot;|2016-10<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26854917 Integrative approaches for large-scale transcriptome-wide association studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-9<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26950747 Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/18<br /> |style=&quot;padding:.4em;&quot;|2016-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27013732 Survey of variation in human transcription factors reveals prevalent DNA binding changes]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-7<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26502339 Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/11<br /> |style=&quot;padding:.4em;&quot;|2016-6<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25171417 Predicting Cancer-specific vulnerability via data-driven detection of synthetic lethality]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-5<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23467089 Dynamic regulatory network controlling Th17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/4<br /> |style=&quot;padding:.4em;&quot;|2016-4<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25853550 Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-3<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26618344 Regulators of genetic risk of breast cancer identified by integrative network analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/4/27<br /> |style=&quot;padding:.4em;&quot;|2016-2<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26780608 A predictive computational framework for direct reprogramming between human cell types]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-1<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25126793 CellNet: Network biology applied to stem cell engineering]<br /> |}<br /> <br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2015<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/11<br /> |style=&quot;padding:.4em;&quot;|2015-55<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/24/2/340.long Improved exome prioritization of disease genes through cross-species phenotype comparison.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-54<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0002929714001128 Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/04<br /> |style=&quot;padding:.4em;&quot;|2015-53<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2656.html eXtasy: variant prioritization by genomic data fusion.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-52<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/21/9/1529.long A probabilistic disease-gene finder for personal genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/28<br /> |style=&quot;padding:.4em;&quot;|2015-51<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n12/full/ng.3141.html Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-50<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v28/n5/full/nbt.1630.html GREAT improves functional interpretation of cis-regulatory regions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/21<br /> |style=&quot;padding:.4em;&quot;|2015-49<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2832.html Functional annotation of noncoding sequence variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-48<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/15/10/480 FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/14<br /> |style=&quot;padding:.4em;&quot;|2015-47<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v12/n2/full/nmeth.3215.html Selecting causal genes from genome-wide association studies via functionally coherent subnetworks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-46<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2015/150119/ncomms6890/full/ncomms6890.html Biological interpretation of genome-wide association studies using predicted gene functions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/05/07<br /> |style=&quot;padding:.4em;&quot;|2015-45<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/140626/ncomms5212/full/ncomms5212.html Human symptoms-disease network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-44<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413010246 A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-43<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6224/1257601.long Uncovering disease-disease relationships through the incomplete interactome.]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/30<br /> |style=&quot;padding:.4em;&quot;|2015-42<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/142.long The discovery of integrated gene networks for autism and related disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-41<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/12/774.long Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/04/23<br /> |style=&quot;padding:.4em;&quot;|2015-40<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature13990.html Dissecting neural differentiation regulatory networks through epigenetic footprinting.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-39<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14221.html Cell-of-origin chromatin organization shapes the mutational landscape of cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-38<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14248.html Integrative analysis of 111 reference human epigenomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/09<br /> |style=&quot;padding:.4em;&quot;|2015-37<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/246.long Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-36<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014974 A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/02<br /> |style=&quot;padding:.4em;&quot;|2015-35<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v14/n6/full/nrg3454.html Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-34<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6225/1010.long Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/26<br /> |style=&quot;padding:.4em;&quot;|2015-33<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/257.long Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/41.long Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/19<br /> |style=&quot;padding:.4em;&quot;|2015-31<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3154.html Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-30<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v16/n3/full/nrg3833.html Computational and analytical challenges in single-cell transcriptomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/12<br /> |style=&quot;padding:.4em;&quot;|2015-29<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867415000136 Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-28<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v500/n7464/full/nature12506.html Richness of human gut microbiome correlates with metabolic markers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-27<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v490/n7418/full/nature11450.html A metagenome-wide association study of gut microbiota in type 2 diabetes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/09<br /> |style=&quot;padding:.4em;&quot;|2015-26<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326 Practical guidelines for the comprehensive analysis of ChIP-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-25<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/5/777.long Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-24<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/11/760.long Rapid neurogenesis through transcriptional activation in human stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/02<br /> |style=&quot;padding:.4em;&quot;|2015-23<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414011787 Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-22<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004237 Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v45/n6/full/ng.2653.html The Genotype-Tissue Expression (GTEx) project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/24<br /> |style=&quot;padding:.4em;&quot;|2015-20<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/346/6212/1007.long Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-19<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13985.html Principles of regulatory information conservation between mouse and human.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-18<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13972.html Conservation of trans-acting circuitry during mammalian regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/16<br /> |style=&quot;padding:.4em;&quot;|2015-17<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13835.html Genetic and epigenetic fine mapping of causal autoimmune disease variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-16<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n3/full/ng.2892.html A general framework for estimating the relative pathogenicity of human genetic variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-15<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003825 A probabilistic model to predict clinical phenotypic traits from genome sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2015/02/02<br /> |style=&quot;padding:.4em;&quot;|2015-14<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/22/E2329.long Relating the metatranscriptome and metagenome of the human gut.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-13<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v513/n7516/full/nature13568.html Alterations of the human gut microbiome in liver cirrhosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-12<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2942.html An integrated catalog of reference genes in the human gut microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-11<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2939.html Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=5|2015/01/26<br /> |style=&quot;padding:.4em;&quot;|2015-10<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/9/1/666.long Computational meta'omics for microbial community studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-09<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/5/7/65 Functional profiling of the gut microbiome in disease-associated inflammation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-08<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S016895251200145X Biodiversity and functional genomics in the human microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-07<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002808 Chapter 12: Human Microbiome Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-06<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.cell.com/cell/abstract/S0092-8674%2814%2900864-2 Conducting a Microbiome Study.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/01/12<br /> |style=&quot;padding:.4em;&quot;|2015-05<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/141210/ncomms6522/full/ncomms6522.html Small RNA changes en route to distinct cellular states of induced pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-04<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14046.html Genome-wide characterization of the routes to pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-03<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14047.html Divergent reprogramming routes lead to alternative stem-cell states.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/01/05<br /> |style=&quot;padding:.4em;&quot;|2015-02<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/21/E2191.long Global view of enhancer-promoter interactome in human cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-01<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://nar.oxfordjournals.org/content/41/22/10391.long Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2014<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/23<br /> |style=&quot;padding:.4em;&quot;|2014-41<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413012270 Super-enhancers in the control of cell identity and disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-40<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413003929 Master transcription factors and mediator establish super-enhancers at key cell identity genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2014/12/09<br /> |style=&quot;padding:.4em;&quot;|2014-39<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414013713 Unraveling the biology of a fungal meningitis pathogen using chemical genetics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-38<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014226 A proteome-scale map of the human interactome network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-37<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/9/752.long The role of the interactome in the maintenance of deleterious variability in human populations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-36<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/342/6154/1235587.long Integrative annotation of variants from 1092 humans: application to cancer genomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/02<br /> |style=&quot;padding:.4em;&quot;|2014-35<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/8/1319.long Mapping functional transcription factor networks from gene expression data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-34<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v15/n7/full/nrg3684.html In pursuit of design principles of regulatory sequences.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/25<br /> |style=&quot;padding:.4em;&quot;|2014-33<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/3/6/36 Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-32<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S009286741300891X Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/18<br /> |style=&quot;padding:.4em;&quot;|2014-31<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/6/8/64 The 'dnet' approach promotes emerging research on cancer patient survival.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-30<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414010368 Determination and inference of eukaryotic transcription factor sequence specificity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/11/11<br /> |style=&quot;padding:.4em;&quot;|2014-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/110/16/6412.long Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-28<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009350 Dissecting engineered cell types and enhancing cell fate conversion via CellNet.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-27<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009349 CellNet: network biology applied to stem cell engineering.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/04<br /> |style=&quot;padding:.4em;&quot;|2014-26<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009775 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-25<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n9/full/nmeth.3046.html Phen-Gen: combining phenotype and genotype to analyze rare disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/10/28<br /> |style=&quot;padding:.4em;&quot;|2014-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-23<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n9/full/ng.3051.html Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/30<br /> |style=&quot;padding:.4em;&quot;|2014-22<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2651.html Network-based stratification of tumor mutations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-21<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414001457 Synonymous mutations frequently act as driver mutations in human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/23<br /> |style=&quot;padding:.4em;&quot;|2014-20<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003460 VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-19<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/13/12/R124 DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/16<br /> |style=&quot;padding:.4em;&quot;|2014-18<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/14/5/R52 Integrated analysis of recurrent properties of cancer genes to identify novel drivers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-17<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/4/11/89 Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/02<br /> |style=&quot;padding:.4em;&quot;|2014-16<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23228031 A network module-based method for identifying cancer prognostic signatures.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-15<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24429628 Realizing the promise of cancer predisposition genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/19<br /> |style=&quot;padding:.4em;&quot;|2014-14<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24952901 Assessing the clinical utility of cancer genomic and proteomic data across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-13<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24132290 Mutational landscape and significance across 12 major cancer types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/12<br /> |style=&quot;padding:.4em;&quot;|2014-12<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23945592 Signatures of mutational processes in human cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-11<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24390350 Discovery and saturation analysis of cancer genes across 21 tumour types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/05<br /> |style=&quot;padding:.4em;&quot;|2014-10<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24084849 Comprehensive identification of mutational cancer driver genes across 12 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-9<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24037244 IntOGen-mutations identifies cancer drivers across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/29<br /> |style=&quot;padding:.4em;&quot;|2014-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23900255 Computational approaches to identify functional genetic variants in cancer genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-7<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23770567 Mutational heterogeneity in cancer and the search for new cancer-associated genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-6<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n4/abs/nmeth.2891.html Cancer genomes: discerning drivers from passengers]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/22<br /> |style=&quot;padding:.4em;&quot;|2014-5<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24071849 The Cancer Genome Atlas Pan-Cancer analysis project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-4<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23539594 Cancer genome landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-3<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=21900272 Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/07/15<br /> |style=&quot;padding:.4em;&quot;|2014-2<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670764 A promoter-level mammalian expression atlas.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-1<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670763 An atlas of active enhancers across human cell types and tissues.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2013<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/26<br /> |style=&quot;padding:.4em;&quot;|2013-31<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://nar.oxfordjournals.org/content/40/16/7690.long Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-30<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n4/full/nbt.2519.html Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/04<br /> |style=&quot;padding:.4em;&quot;|2013-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[https://www.cell.com/abstract/S0092-8674(13)00439-X Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-28<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n3/full/nbt.2514.html Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/28<br /> |style=&quot;padding:.4em;&quot;|2013-27<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.pnas.org/content/102/38/13544.long Discovering statistically significant pathways in expression profiling studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-26<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0058977 Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/21<br /> |style=&quot;padding:.4em;&quot;|2013-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v496/n7446/full/nature11981.html Dynamic regulatory network controlling TH17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-24<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/14<br /> |style=&quot;padding:.4em;&quot;|2013-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-22<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|'''2013/05/07'''<br /> |style=&quot;padding:.4em;&quot;|2013-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-20<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/09<br /> |style=&quot;padding:.4em;&quot;|2013-19<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/02<br /> |style=&quot;padding:.4em;&quot;|2013-18<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot; |2013/03/12<br /> |style=&quot;padding:.4em;&quot;|2013-17<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/03/05<br /> |style=&quot;padding:.4em;&quot;|2013-16<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/21<br /> |style=&quot;padding:.4em;&quot;|2013-15<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-14<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-13<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/15<br /> |style=&quot;padding:.4em;&quot;|2013-12<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-11<br /> |style=&quot;padding:.4em;&quot;| JE Shim, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-10<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/08<br /> |style=&quot;padding:.4em;&quot;|2013-09<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-08<br /> |style=&quot;padding:.4em;&quot;|JE Shim, CY Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-07<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/01/25<br /> |style=&quot;padding:.4em;&quot;|2013-06<br /> |style=&quot;padding:.4em;&quot;|HJ Han, '''JH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-05<br /> |style=&quot;padding:.4em;&quot;|'''ER Kim''', HS Shim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-04<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/01/18<br /> |style=&quot;padding:.4em;&quot;|2013-03<br /> |style=&quot;padding:.4em;&quot;|KS Kim, '''TH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-02<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/01/11<br /> |style=&quot;padding:.4em;&quot;|2013-01<br /> |style=&quot;padding:.4em;&quot;| '''JE Shim''', CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]<br /> |}<br /> <br /> 2012<br /> {|border =&quot;1&quot;<br /> |style=&quot;color:black; background-color:#dcdcdc; padding:5px;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper title<br /> |-<br /> |rowspan = &quot;1&quot;|2013/01/11<br /> |align =&quot;center&quot;|2012-81<br /> |[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]<br /> |-<br /> |rowspan = &quot;1&quot;|2012/12/04<br /> |align =&quot;center&quot;|2012-80<br /> |[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/20<br /> | align=&quot;center&quot;|2012-79<br /> |[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]<br /> |-<br /> | align=&quot;center&quot;|2012-78<br /> |[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/06<br /> | align=&quot;center&quot;|2012-77<br /> |[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]<br /> |-<br /> | align=&quot;center&quot;|2012-76<br /> |[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] <br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/19<br /> | align=&quot;center&quot;|2012-75<br /> |[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]<br /> |-<br /> | align=&quot;center&quot;|2012-74 <br /> |[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] <br /> |-<br /> | align=&quot;center&quot;|2012-73<br /> |[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]<br /> |-<br /> | align=&quot;center&quot;|2012-72<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]<br /> |-<br /> | align=&quot;center&quot;|2012-71<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]<br /> |-<br /> | align=&quot;center&quot;|2012-70<br /> |[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]<br /> |-<br /> |rowspan = &quot;8&quot; |2012/07/16<br /> | align=&quot;center&quot;|2012-69<br /> |[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]<br /> |-<br /> | align=&quot;center&quot;|2012-66<br /> |[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;TH Kim)The Sequence Alignment/Map format and SAMtools]<br /> |-<br /> | align=&quot;center&quot;|2012-65<br /> |[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;TH Kim)The Variant Call Format and VCFtools]<br /> |-<br /> | align=&quot;center&quot;|2012-64<br /> |[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]<br /> |-<br /> |align=&quot;center&quot;|2012-63<br /> |[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-62<br /> |[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]<br /> |-<br /> |align=&quot;center&quot;|2012-61<br /> |[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]<br /> |-<br /> |align=&quot;center&quot;|2012-60<br /> |[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/07/13<br /> |align=&quot;center&quot;|2012-59<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]<br /> |-<br /> | align=&quot;center&quot;|2012-58<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;HJ Kim)A framework for human microbiome research]<br /> |-<br /> |align=&quot;center&quot;|2012-57<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]<br /> |-<br /> |rowspan = &quot;4&quot; |2012/07/12<br /> |align=&quot;center&quot;|2012-56<br /> |[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]<br /> |-<br /> |align=&quot;center&quot;|2012-55<br /> |[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]<br /> |-<br /> | align=&quot;center&quot;|2012-54<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-53<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/09<br /> |align=&quot;center&quot;|2012-52<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-51<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]<br /> |-<br /> | align=&quot;center&quot;|2012-50<br /> |[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]<br /> |-<br /> |align=&quot;center&quot;|2012-49<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]<br /> |-<br /> |align=&quot;center&quot;|2012-48<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]<br /> |-<br /> |align=&quot;center&quot;|2012-47<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/06<br /> | align=&quot;center&quot;|2012-46<br /> |[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]<br /> |-<br /> |align=&quot;center&quot;|2012-45<br /> |[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]<br /> |-<br /> |align=&quot;center&quot;|2012-44<br /> |[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]<br /> |-<br /> |align=&quot;center&quot;|2012-43<br /> |[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]<br /> |-<br /> | align=&quot;center&quot;|2012-42<br /> |[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]<br /> |-<br /> |align=&quot;center&quot;|2012-41<br /> |[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;KS Kim)Exome sequencing and the genetic basis of complex traits]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/02<br /> |align=&quot;center&quot;|2012-40<br /> |[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-39<br /> |[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;TH Kim)De novo discovery of mutated driver pathways in cancer]<br /> |-<br /> | align=&quot;center&quot;|2012-38<br /> |[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]<br /> |-<br /> |align=&quot;center&quot;|2012-37<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]<br /> |-<br /> |align=&quot;center&quot;|2012-36<br /> |[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]<br /> |-<br /> |align=&quot;center&quot;|2012-35<br /> |[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;HJ Kim)Detecting Novel Associations in Large Data Sets]<br /> |-<br /> |rowspan = &quot;3&quot; 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background-color:#dcdcdc;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_title<br /> |-<br /> |rowspan = &quot;6&quot; |2011/11/28<br /> |align=&quot;center&quot;|2011-49<br /> |[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]<br /> |-<br /> |align=&quot;center&quot;|2011-48<br /> |[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-47<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]<br /> |-<br /> |align=&quot;center&quot;|2011-46<br /> |[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]<br /> |-<br /> |align=&quot;center&quot;|2011-45<br /> |[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-44<br /> |[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]<br /> |-<br /> |rowspan = &quot;3&quot; 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|2011/03/30<br /> |align=&quot;center&quot;|2011-19<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]<br /> |-<br /> |align=&quot;center&quot;|2011-18<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]<br /> |-<br /> |rowspan = &quot;2&quot; |2011/03/16<br /> |align=&quot;center&quot;|2011-17<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']<br /> |-<br /> |align=&quot;center&quot;|2011-16<br /> |[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]<br /> |-<br /> |rowspan = &quot;3&quot; |2011/04/25<br /> |align=&quot;center&quot;|2011-15<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]<br /> |-<br /> |align=&quot;center&quot;|2011-14<br /> |[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]<br /> |-<br /> |align=&quot;center&quot;|2011-13<br /> |[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]<br /> |-<br /> |rowspan = &quot;2&quot; 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background-color:#dcdcdc;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_title<br /> |-<br /> |rowspan = &quot;2&quot;|2010/12/27<br /> |align=&quot;center&quot;|2010-29<br /> |[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]<br /> |-<br /> |align=&quot;center&quot;|2010-28<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]<br /> |-<br /> |rowspan = &quot;2&quot;|2010/11/15<br /> |align=&quot;center&quot;|2010-27<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]<br /> |-<br /> |align=&quot;center&quot;|2010-26<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B8JDC-50J4MRJ-2&amp;_user=44062&amp;_coverDate=10%2F10%2F2010&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]<br /> |-<br /> |rowspan = &quot;2&quot;|2010/11/01<br /> |align=&quot;center&quot;|2010-25<br /> |[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]<br /> |-<br /> |align=&quot;center&quot;|2010-24<br /> |[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]<br /> |-<br /> |2010/10/11<br /> |align=&quot;center&quot;|2010-23<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]<br /> |-<br /> |rowspan = &quot;2&quot;|2010/09/13<br /> |align=&quot;center&quot;|2010-22<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]<br /> |-<br /> |align=&quot;center&quot;|2010-21<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]<br /> |-<br /> |2010/05/26<br /> |align=&quot;center&quot;|2010-20<br /> |[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]<br /> |-<br /> |2010/05/19<br /> |align=&quot;center&quot;|2010-19<br /> |[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]<br /> |-<br /> |2010/04/21<br /> |align=&quot;center&quot;|2010-18<br /> |[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]<br /> |-<br /> |2010/04/14<br /> |align=&quot;center&quot;|2010-17<br /> |[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]<br /> |-<br /> |rowspan = &quot;2&quot; |2010/04/07<br /> |align=&quot;center&quot;|2010-16<br /> |[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]<br /> |-<br /> |align=&quot;center&quot;|2010-15<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]<br /> |-<br /> |rowspan=&quot;2&quot;|2010/03/31<br /> |align=&quot;center&quot;|2010-14<br /> |[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]<br /> |-<br /> |align=&quot;center&quot;|2010-13<br /> |[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]<br /> |-<br /> |2010/03/24<br /> |align=&quot;center&quot;|2010-12<br /> |[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]<br /> |-<br /> |2010/01/18<br /> |align=&quot;center&quot;|2010-11<br /> |JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies<br /> |-<br /> |2010/01/16<br /> |align=&quot;center&quot;|2010-10<br /> |systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells<br /> |-<br /> |2010/01/15<br /> |align=&quot;center&quot;|2010-09<br /> |distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions<br /> |-<br /> |2010/01/14<br /> |align=&quot;center&quot;|2010-08<br /> |chemogenomic_profiling_predicts_antifungal_synergies<br /> |-<br /> |2010/01/13<br /> |align=&quot;center&quot;|2010-07<br /> |edgetic_perturbation_models_of_human_inherited_disorders<br /> |-<br /> |2010/01/12<br /> |align=&quot;center&quot;|2010-06<br /> |analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans<br /> |-<br /> |2010/01/11<br /> |align=&quot;center&quot;|2010-05<br /> |predicting_new_molecular_targets_for_known_drugs.pdf<br /> Reference:SEA(Similarity Ensemble Approach)<br /> |-<br /> |2010/01/09<br /> |align=&quot;center&quot;|2010-04<br /> |harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance<br /> |-<br /> |2010/01/08<br /> |align=&quot;center&quot;|2010-03<br /> |an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer<br /> |-<br /> |2010/01/07<br /> |align=&quot;center&quot;|2010-02<br /> |a_phenotypic_profile_of_the_candida_albicans_regulatory_network<br /> |-<br /> |2010/01/06<br /> |align=&quot;center&quot;|2010-01<br /> |a_global_view_of_protein_expression_in_human_cells_tissues_and_organs<br /> |}<br /> <br /> <br /> <br /> <br /> &lt;!--<br /> {| border =&quot;1&quot;<br /> {| border =&quot;1&quot;<br /> |rowspan = &quot;3&quot; 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| <br /> |rowspan = &quot;3&quot; |November 7 Mon, 2011<br /> |rowspan = &quot;3&quot; | JW Song<br /> |[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]<br /> |-<br /> |[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]<br /> |-<br /> |[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]<br /> |-<br /> |rowspan = &quot;3&quot; | <br /> |rowspan = &quot;3&quot; |October 5 Mon, 2011<br /> |rowspan = &quot;3&quot; | HH Kim<br /> |[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]<br /> |-<br /> |[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]<br /> |-<br /> |[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]<br /> |-<br /> |rowspan = &quot;4&quot; |<br /> |rowspan = &quot;4&quot; |October 4 Mon, 2011<br /> |rowspan = &quot;4&quot; | S Beck<br /> |[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]<br /> |-<br /> |[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html Molecular eco-systems biology: towards an understanding of community function]<br /> |-<br /> |[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]<br /> |-<br /> |[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |September 19 Mon, 2011<br /> |rowspan = &quot;2&quot; | TY Oh<br /> |[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]<br /> |-<br /> |[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]<br /> |-<br /> |rowspan = &quot;2&quot; | <br /> |rowspan = &quot;2&quot; |September 5 Mon, 2011<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]<br /> |-<br /> |SH Hwang<br /> |[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]<br /> |-<br /> |rowspan = &quot;2&quot; | <br /> |rowspan = &quot;2&quot; | August 22 Mon, 2011<br /> |ER Kim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]<br /> |-<br /> |<br /> |June 20 Mon, 2011<br /> |JH Shin<br /> |[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 30 Mon, 2011<br /> |rowspan = &quot;2&quot; | HH Kim<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]<br /> |-<br /> <br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 16 Mon, 2011<br /> |rowspan = &quot;2&quot; | AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]<br /> |-<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |April 25 Mon, 2011<br /> |rowspan = &quot;3&quot; |S Beck<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 11 Mon, 2011<br /> |JE Shim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]<br /> |-<br /> |T Lee<br /> |***Changed!***<br /> [http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 28 Mon, 2011<br /> |rowspan = &quot;2&quot;|TY Oh<br /> |[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 14 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6WSN-51SFHJD-1&amp;_user=44062&amp;_coverDate=01%2F07%2F2011&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;searchtype=a phenotypic landscape of a bacterial cell]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]<br /> |-<br /> <br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|February 28 Mon, 2011<br /> |KS Kim<br /> |[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]<br /> |-<br /> |HJ Han<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]<br /> |-<br /> |<br /> |February 21 Mon, 2011<br /> |MH Lee<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]<br /> |-<br /> |<br /> |February 14 Mon, 2011<br /> |AR Cho<br /> |[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|January 31 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]<br /> |-<br /> |[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot; | December 27 Mon, 2010<br /> |ER Kim<br /> |[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 15 Mon, 2010<br /> |AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]<br /> |-<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B8JDC-50J4MRJ-2&amp;_user=44062&amp;_coverDate=10%2F10%2F2010&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 1 Mon, 2010<br /> |HH Kim<br /> |[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]<br /> |-<br /> |JH Shin<br /> |[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]<br /> |-<br /> |<br /> |October 11 Mon, 2010<br /> |JE Shim<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]<br /> |-<br /> |<br /> |September 13 Mon, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]<br /> [http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]<br /> |-<br /> |<br /> |May 26 Wed, 2010<br /> |AR Cho<br /> |[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]<br /> |-<br /> |<br /> |May 19 Wed, 2010<br /> |SG Ji<br /> |[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]<br /> |-<br /> |<br /> |April 21 Wed, 2010<br /> |JH Shin<br /> |[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]<br /> |-<br /> |<br /> |April 14 Wed, 2010<br /> |TY Oh<br /> |[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 7 Wed, 2010<br /> |HHkim<br /> |<br /> [http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]<br /> |-<br /> |T Lee<br /> |<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]<br /> |-<br /> |<br /> |Mar 31 Wed, 2010<br /> |JE Shim<br /> |[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]<br /> [http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]<br /> |-<br /> |<br /> |Mar 24 Wed, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]<br /> |-<br /> |<br /> |Jan 18 Mon, 2010<br /> |TY Oh(T Lee)<br /> |JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies<br /> |-<br /> |<br /> |Jan 16 Sat, 2010<br /> |JE Shim(MH Lee)<br /> |systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells<br /> |-<br /> |<br /> |Jan 15 Fri, 2010<br /> |SG Ji<br /> |distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions<br /> |-<br /> |<br /> |Jan 14 Thu, 2010<br /> |HH kim<br /> |chemogenomic_profiling_predicts_antifungal_synergies<br /> |-<br /> |<br /> |Jan 13 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |edgetic_perturbation_models_of_human_inherited_disorders<br /> |-<br /> |<br /> |Jan 12 Tue, 2010<br /> |TY Oh(T Lee)<br /> |analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans<br /> |-<br /> |<br /> |Jan 11 Mon, 2010<br /> |JE Shim(MH Lee)<br /> |predicting_new_molecular_targets_for_known_drugs.pdf<br /> Reference:SEA(Similarity Ensemble Approach)<br /> |-<br /> |<br /> |Jan 09 Sat, 2010<br /> |SG Ji<br /> |harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance<br /> |-<br /> |<br /> |Jan 08 Fri, 2010<br /> |AR Cho<br /> |an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer<br /> |-<br /> |<br /> |Jan 07 Thu, 2010<br /> |HH Kim <br /> |a_phenotypic_profile_of_the_candida_albicans_regulatory_network<br /> |-<br /> |<br /> |Jan 06 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |a_global_view_of_protein_expression_in_human_cells_tissues_and_organs<br /> |}<br /> --&gt;</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:SB_Baek&diff=5144 2020-02-11T01:18:58Z

<p>Junha92: /* Seungbyn Baek */</p> <hr /> <div>===Seungbyn Baek===<br /> {|<br /> |[[File:Who.png|300px]]<br /> |<br /> *'''Master's program student''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2014-2017)</div>

Junha92 https://netbiolab.org/wiki/index.php?title=Teaching&diff=5142 2020-01-31T13:50:52Z

<p>Junha92: /* Teaching materials for BIML workshop */</p> <hr /> <div>== Teaching materials for Experiment in microbiology and biochemical engineering laboratory Course ==<br /> [//netbiolab.org/wiki/images/8/8e/2019_nbl_experiment.pdf 2019 netbiolab experiment teaching material]<br /> <br /> [//netbiolab.org/wiki/images/1/18/2018_NBLexperiment_training_material.zip 2019 netbiolab experiment teaching material]<br /> <br /> == Teaching materials for Yonsei Bioinformatics Course ==<br /> [//netbiolab.org/wiki/2019_1_Kallisto_material.zip 2019 Bioinformatics Kallisto Practice]<br /> <br /> [//netbiolab.org/wiki/2019_1_WebMEV_material.zip 2019 Bioinformatics WebMeV Practice]<br /> <br /> [//netbiolab.org/wiki/Bioinformatics_Machine_Learning_Practice_2019.zip 2019 Bioinformatics Machine Learning Practice]<br /> <br /> [//netbiolab.org/wiki/2019_1_Tensorflow.zip 2019 Bioinformatics Deep Learning Practice (Tensorflow)]<br /> <br /> == Teaching materials for BIML workshop ==<br /> <br /> [https://netbiolab.org/wiki/images/0/0e/BIML2020_Lecture_Files.zip BIMIL2020 scGRN &amp; scATAC lecture files]<br /> <br /> [https://www.netbiolab.org/wiki/images/7/7b/2017_BIML_0216_2.zip BIML2017 practice 2 PPT file &amp; python scripts]<br /> <br /> [http://www.netbiolab.org/wiki/images/4/4b/Practice1.pdf BIML2016 practice 1 PPT file]<br /> <br /> [http://www.netbiolab.org/wiki/images/c/c0/Biml_python_scripts.zip BIML2016 practice 2 python scripts]<br /> <br /> &lt;div&gt;{{#widget:AddHtml|content=&lt;img src=&quot;../wiki/wordcloud_2013_2017.jpg&quot; alt=&quot;Word Cloud from Abstraction below publications&quot; title=&quot;Word Cloud of NBL Publications' Abstract&quot; /&gt;}}&lt;/div&gt;</div>

Junha92 https://netbiolab.org/wiki/index.php?title=File:BIML2020_Lecture_Files.zip&diff=5141 2020-01-31T13:48:06Z

<p>Junha92: </p> <hr /> <div></div>

Junha92 https://netbiolab.org/wiki/index.php?title=File:BIML2020_scGRN_%EA%B0%95%EC%9D%98%EC%9E%90%EB%A3%8C_%EC%9D%B4%EC%9D%B8%EC%84%9D_0201.pdf&diff=5140 2020-01-31T13:41:53Z

<p>Junha92: </p> <hr /> <div></div>

Junha92 https://netbiolab.org/wiki/index.php?title=Teaching&diff=5139 2020-01-31T13:21:46Z

<p>Junha92: /* Teaching materials for BIML workshop */</p> <hr /> <div>== Teaching materials for Experiment in microbiology and biochemical engineering laboratory Course ==<br /> [//netbiolab.org/wiki/images/8/8e/2019_nbl_experiment.pdf 2019 netbiolab experiment teaching material]<br /> <br /> [//netbiolab.org/wiki/images/1/18/2018_NBLexperiment_training_material.zip 2019 netbiolab experiment teaching material]<br /> <br /> == Teaching materials for Yonsei Bioinformatics Course ==<br /> [//netbiolab.org/wiki/2019_1_Kallisto_material.zip 2019 Bioinformatics Kallisto Practice]<br /> <br /> [//netbiolab.org/wiki/2019_1_WebMEV_material.zip 2019 Bioinformatics WebMeV Practice]<br /> <br /> [//netbiolab.org/wiki/Bioinformatics_Machine_Learning_Practice_2019.zip 2019 Bioinformatics Machine Learning Practice]<br /> <br /> [//netbiolab.org/wiki/2019_1_Tensorflow.zip 2019 Bioinformatics Deep Learning Practice (Tensorflow)]<br /> <br /> == Teaching materials for BIML workshop ==<br /> <br /> <br /> <br /> [https://www.netbiolab.org/wiki/images/7/7b/2017_BIML_0216_2.zip BIML2017 practice 2 PPT file &amp; python scripts]<br /> <br /> [http://www.netbiolab.org/wiki/images/4/4b/Practice1.pdf BIML2016 practice 1 PPT file]<br /> <br /> [http://www.netbiolab.org/wiki/images/c/c0/Biml_python_scripts.zip BIML2016 practice 2 python scripts]<br /> <br /> &lt;div&gt;{{#widget:AddHtml|content=&lt;img src=&quot;../wiki/wordcloud_2013_2017.jpg&quot; alt=&quot;Word Cloud from Abstraction below publications&quot; title=&quot;Word Cloud of NBL Publications' Abstract&quot; /&gt;}}&lt;/div&gt;</div>

Junha92 https://netbiolab.org/wiki/index.php?title=Album&diff=5113 2019-12-02T03:48:13Z

<p>Junha92: /* Group Photo */</p> <hr /> <div>__NOTOC__<br /> =='''Group Photo'''==<br /> {|border=&quot;0&quot; width=&quot;500&quot;<br /> |<br /> |align=&quot;center&quot;|<br /> [[File:20191128_ThanksGiving.jpg|thumb|Thanksgiving 2019]]<br /> |align=&quot;center&quot;|<br /> [[File:Web_main_2019.png|thumb|2019]]<br /> |align=&quot;center&quot;|<br /> [[File:2018_랩단체사진.jpg|thumb|2018]]<br /> |align=&quot;center&quot;|<br /> [[File:Groupphoto_20161208_crop.jpg|thumb|2017]]<br /> |-<br /> |<br /> |align=&quot;center&quot;|<br /> [[File:P4070576 1.jpg|thumb|2016]]<br /> |align=&quot;center&quot;|<br /> [[File:Groupphoto 20150601 2.jpeg|thumb|2015]]<br /> |align=&quot;center&quot;|<br /> [[File:2014group3.JPG|thumb|2014]]<br /> |align=&quot;center&quot;|<br /> [[File:2013단체1.jpg|thumb|2013]]<br /> |-<br /> |<br /> |align=&quot;center&quot;|<br /> [[File:People_Album_Spring2012_main.jpg|thumb|2012]]<br /> |align=&quot;center&quot;|<br /> [[File:People_Album_Spring2011_05.jpg|thumb|2011]]<br /> |align=&quot;center&quot;|<br /> [[File:People_Album_Spring2010_01.jpg|thumb|2010]]<br /> |}<br /> ----<br /> *[[People:Album:2017 11th AYRCOB, GIW | 2017 Oct, 11th AYRCOB and GIW]]<br /> ----<br /> *[[People:Album:2016 10th AYRCOB, GIW | 2016 Oct, 10th AYRCOB and GIW]]<br /> ----<br /> *[[People:Album:Groupphoto_20161208_crop.jpg| 2016 Dec, Thanksgiving Day]]<br /> ----<br /> *[[People:Album:2016 Teachers' day | 2016 Teacher's day]]<br /> ----<br /> *[[People:Album:2016 Group photo | 2016 Group photo]]<br /> ----<br /> *[[People:Album:2016 9th AYRCOB | 2016 9th AYRCOB]]<br /> ----<br /> *[[People:Album:2015 Group photo | 2015 Group photo]]<br /> ----<br /> *[[People:Album:2015 Teachers' day | 2015 Teacher's day]]<br /> ----<br /> *[[People:Album:2014 Summer MT | 2014 Summer MT]]<br /> ----<br /> *[[People:Album:2014 Group photo | 2014 Group photo]]<br /> ----<br /> *[[People:Album:2013 Summer MT | 2013 Summer MT]]<br /> ----<br /> *[[People:Album:2013 Group photo | 2013 Group photo]]<br /> ----<br /> *[[People:Album:Teachers' day 2013| 2013 May, Teachers' day]]<br /> ----<br /> *[[People:Album:ThanksGivingDay_2012| 2012 Nov, Thanksgiving Day]]<br /> ----<br /> *[[People:Album:MT_2012| 2012 June, Summer MT]]<br /> ----<br /> *[[People:Album:GroupPhoto_2012_Spring|2012 April, Group Photo]]<br /> ----<br /> *[[People:Album:Keystone_2012| 2012 February, Keystone]]<br /> ----<br /> *[[People:Album:MT_2011| 2011 August, Summer MT]]<br /> ----<br /> *[[People:Album:ISSCR_2011| 2011 June, ISSCR]]<br /> ----<br /> *[[People:Album:RECOMB_2011| 2011 March, RECOMB2011]]<br /> ----<br /> *[[People:Album:AYRCOB5th_2011| 2011 August, Ayrcob 5th]]<br /> ----<br /> *[[People:Album:Teachers_Day_2011| 2011 May, Teacher's day]]<br /> ----<br /> *[[People:Album:GroupPhoto_2011_Spring|2011 March, Group Photo]]<br /> ----<br /> *[[People:Album:APBC2011|2011 February, APBC (Incheon)]]<br /> ----<br /> *[[People:Album:ISMB2010|2010 June, ISMB(Boston)]]<br /> ----<br /> *[[People:Album:Sue2010|2010 June, Sue Rhee visit]]<br /> ----<br /> *[[People:Album:Cup_cake_2010| 2010 May, Cup Cake professor]]<br /> ----<br /> *[[People:Album:Edward_Marcotte_at_NBL|2010 May, Edward Marcotte and @NBL Reunion]]<br /> ----<br /> *[[People:Album:GroupPhoto_2010_Spring|2010 March, Group Photo]]<br /> ----<br /> *[[People:Album:KSBSB2009|2009 November, KSBSB (Pusan)]]<br /> ----<br /> *[[People:Album:ICSB2009|2009 August, ICSB (Stanford)]]<br /> ----<br /> *[[People:Album:winter_MT_2008|2008 December, Winter MT]]</div>

Junha92 https://netbiolab.org/wiki/index.php?title=File:20191128_ThanksGiving.jpg&diff=5112 2019-12-02T03:42:22Z

<p>Junha92: </p> <hr /> <div></div>

Junha92 https://netbiolab.org/wiki/index.php?title=Journal_Club&diff=5093 2019-09-16T08:34:38Z

<p>Junha92: </p> <hr /> <div>{|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2019-2nd semester<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; stype=&quot;padding:.4em&quot; | Team<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/15<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-51<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303488 Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-50<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0722-6 Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/08<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-49<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41587-019-0206-z Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-48<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/739011v1 Assessment of computational methods for the analysis of single-cell ATAC-seq data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/01<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-47<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303026 Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-46<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307731 Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/24<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-45<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://genome.cshlp.org/content/early/2019/04/01/gr.243725.118 The accessible chromatin landscape of the murine hippocampus at single-cell resolution]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-44<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741830446X Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/17<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-43<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://science.sciencemag.org/content/365/6449/eaau4735 A sparse covarying unit that describes healthy and impaired human gut microbiota development]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-42<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307810 Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/10<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-41<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307329?via%3Dihub Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-40<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nbt.4042 Multiplexed droplet single-cell RNA-sequencing using natural genetic variation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/03<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-39<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S193131281930352X?via%3Dihub The Landscape of Genetic Content in the Gut and Oral Human Microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-38<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307755?via%3Dihub Benchmarking Metagenomics Tools for Taxonomic Classification]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2019<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/20<br /> |style=&quot;padding:.4em;&quot;|19-37<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/719088v1 Coexpression uncovers a unified single-cell transcriptomic landscape]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-36<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/586859v1 Single-cell interactomes of the human brain reveal cell-type specific convergence of brain disorders]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/08/14<br /> |style=&quot;padding:.4em;&quot;|19-35<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004075 Proportionality: a valid alternative to correlation for relative data]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-34<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41598-017-16520-0 propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-33<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41591-018-0157-9 Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/13<br /> |style=&quot;padding:.4em;&quot;|19-32<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41592-018-0254-1 A test metric for assessing single-cell RNA-seq batch correction]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-31<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419305598 Comprehensive Integration of Single-Cell Data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/08<br /> |style=&quot;padding:.4em;&quot;|19-30<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418313941 Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831242X High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/07<br /> |style=&quot;padding:.4em;&quot;|19-28<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/555557v1 A single-cell reference map for human blood and tissue T cell activation reveals functional states in health and disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-27<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831568X Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/30<br /> |style=&quot;padding:.4em;&quot;|19-26<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nm.4466 High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-25<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418311784 A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/23<br /> |style=&quot;padding:.4em;&quot;|19-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26006008 COMPASS identifies T-cell subsets correlated with clinical outcomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-23<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/ncomms14825 Sensitive detection of rare disease-associated cell subsets via representation learning]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/30<br /> |style=&quot;padding:.4em;&quot;|19-22<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936547 Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-21<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936548 Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-20<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30664783 Microbial network disturbances in relapsing refractory Crohn's disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/23<br /> |style=&quot;padding:.4em;&quot;|19-19<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30867587 New insights from uncultivated genomes of the global human gut microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30745586 A new genomic blueprint of the human gut microbiota]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-17<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30661755 Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/16<br /> |style=&quot;padding:.4em;&quot;|19-16<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29311644 Dynamics of metatranscription in the inflammatory bowel disease gut microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-15<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29335555 Metatranscriptome of human faecal microbial communities in a cohort of adult men.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/09<br /> |style=&quot;padding:.4em;&quot;|19-14<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30193113 Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-13<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30193112 Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/02<br /> |style=&quot;padding:.4em;&quot;|19-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30753825 Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30778252 Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/11<br /> |style=&quot;padding:.4em;&quot;|19-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30479382 Lineage tracking reveals dynamic relationships of T cells in colorectal cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30523328 Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/4<br /> |style=&quot;padding:.4em;&quot;|19-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942092 Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942094 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/28<br /> |style=&quot;padding:.4em;&quot;|19-6<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28319088 Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-5<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28622514 Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/3/21<br /> |style=&quot;padding:.4em;&quot;|19-4<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29988129 Phenotype molding of stromal cells in the lung tumor microenvironment.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787436 A single-cell molecular map of mouse gastrulation and early organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787437 The single-cell transcriptional landscape of mammalian organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/14<br /> |style=&quot;padding:.4em;&quot;|19-2<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29961579 Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29198524 Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2018<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/14<br /> |style=&quot;padding:.4em;&quot;|18-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+pan-cancer+analysis+of+enhancer+expression+in+nearly+9000+patient+samples A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Machine+learning+identifies+stemness+features+associated+with+oncogenic+dedifferentiation Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/07<br /> |style=&quot;padding:.4em;&quot;|18-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Developmental+and+oncogenic+programs+in+H3K27M+gliomas+dissected+by+single-cell+RNA-seq Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Chemoresistance+evolution+in+triple-negative+breast+cancer+delineated+by+single-cell+sequencing Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/31<br /> |style=&quot;padding:.4em;&quot;|18-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Mapping+human+pluripotent+stem+cell+differentiation+pathways+using+high+throughput+single-cell+RNA-sequencing Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+single-cell+RNA-seq+survey+of+the+developmental+landscape+of+the+human+prefrontal+cortex A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/24<br /> |style=&quot;padding:.4em;&quot;|18-6<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Single-cell+RNA+sequencing+identifies+celltype-specific+cis-eQTLs+and+co-expression+QTLs Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-5<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=FOCS%3A+a+novel+method+for+analyzing+enhancer+and+gene+activity+patterns+infers+an+extensive+enhancer-promoter+map FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer-promoter map.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/17<br /> |style=&quot;padding:.4em;&quot;|18-4<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29149608 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-3<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29610481 A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/10<br /> |style=&quot;padding:.4em;&quot;|18-2<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Inferring+regulatory+element+landscapes+and+transcription+factor+networks+from+cancer+methylomes Inferring regulatory element landscapes and transcription factor networks from cancer methylomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-1<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28129544 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2017<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/28<br /> |style=&quot;padding:.4em;&quot;|17-36<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28104840 Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-35<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27240091 Landscape of tumor-infiltrating T cell repertoire of human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/14<br /> |style=&quot;padding:.4em;&quot;|17-34<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2015/09/01/025908 The landscape of T cell infiltration in human cancer and its association with antigen presenting gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-33<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.08.052 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/07<br /> |style=&quot;padding:.4em;&quot;|17-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.tandfonline.com/doi/full/10.1080/2162402X.2016.1253654 Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-31<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.03.075 Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/31<br /> |style=&quot;padding:.4em;&quot;|17-30<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.02.065 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-29<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.019 Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/24<br /> |style=&quot;padding:.4em;&quot;|17-28<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.12.022 Systemic Immunity Is Required for Effective Cencer Immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-27<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.020 Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/17<br /> |style=&quot;padding:.4em;&quot;|17-26<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.018 Host and Environmental Factors Influencing Individual Human Cytokine Responses.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-25<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.017 A Functional Genomics Approach to Understand Variation in Cytokine Production in Humans.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/26<br /> |style=&quot;padding:.4em;&quot;|17-24<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2FNMETH.4177 Pooled CRISPR screening with single-cell transcriptome readout.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-23<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.039 Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/12<br /> |style=&quot;padding:.4em;&quot;|17-22<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.038 Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-21<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnbt.3569 Wishbone identifies bifurcating developmental trajectories from single-cell data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/05<br /> |style=&quot;padding:.4em;&quot;|17-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2017/02/21/110668 Reversed graph embedding resolves complex single-cell developmental trajectories.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-19<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnmeth.4150 Single-cell mRNA quantification and differential analysis with Census.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/29<br /> |style=&quot;padding:.4em;&quot;|17-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.060 Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-17<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26051941 Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/22<br /> |style=&quot;padding:.4em;&quot;|17-16<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27580035 Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-15<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27281220 Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/15<br /> |style=&quot;padding:.4em;&quot;|17-14<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1126%2Fscience.aad0501 Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-13<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26084335 Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/28<br /> |style=&quot;padding:.4em;&quot;|17-12<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27824113 A Comprehensive Characterization of the Function of LincRNAs in Transcriptional Regulation Through Long-Range Chromatin Interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-11<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27851969 Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/21<br /> |style=&quot;padding:.4em;&quot;|17-10<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/12/30/097451 Convergence of dispersed regulatory mutations predicts driver genes in prostate cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-09<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27723759 Chromatin structure-based prediction of recurrent noncoding mutations in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/07<br /> |style=&quot;padding:.4em;&quot;|17-08<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/17/088286 Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-07<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/28/090134 Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/31<br /> |style=&quot;padding:.4em;&quot;|17-06<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27912059 Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/24<br /> |style=&quot;padding:.4em;&quot;|17-05<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27851914 Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/01/17<br /> |style=&quot;padding:.4em;&quot;|17-04<br /> |style=&quot;padding:.4em;&quot;|HJ Han <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/25938943 Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-03<br /> |style=&quot;padding:.4em;&quot;|EB Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27306882 CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/10<br /> |style=&quot;padding:.4em;&quot;|17-02<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26527291 ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/03<br /> |style=&quot;padding:.4em;&quot;|17-01<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26287467 Single-cell messenger RNA sequencing reveals rare intestinal cell types]<br /> |-<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2016<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/27<br /> |style=&quot;padding:.4em;&quot;|2016-31<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25664528 Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/6<br /> |style=&quot;padding:.4em;&quot;|2016-30<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26299571 Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/29<br /> |style=&quot;padding:.4em;&quot;|2016-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24658644 The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/22<br /> |style=&quot;padding:.4em;&quot;|2016-28<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26887813 Classification of low quality cells from single-cell RNA-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/15<br /> |style=&quot;padding:.4em;&quot;|2016-27<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000487 Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/8<br /> |style=&quot;padding:.4em;&quot;|2016-26<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000488 Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/1<br /> |style=&quot;padding:.4em;&quot;|2016-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27426982 Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/25<br /> |style=&quot;padding:.4em;&quot;|2016-24<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27549193 Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/11<br /> |style=&quot;padding:.4em;&quot;|2016-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=sidespread+parainflammation Widespread parainflammation in human cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/27<br /> |style=&quot;padding:.4em;&quot;|2016-22<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27535533 Analysis of protein-coding genetic variation in 60,706 humans]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/20<br /> |style=&quot;padding:.4em;&quot;|2016-21<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> Functional characterization of somatic mutations in cancer using network-based inference of protein activity<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27322546 pubmed]<br /> [http://www.nature.com/ng/journal/v48/n8/full/ng.3593.html fulltext]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/13<br /> |style=&quot;padding:.4em;&quot;|2016-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=exploiting+single-cell+expression+to+characterize Exploiting single-cell expression to characterize co-expression replicability.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/6<br /> |style=&quot;padding:.4em;&quot;|2016-19<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26940869 Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/31<br /> |style=&quot;padding:.4em;&quot;|2016-18<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27264179 A Computational Drug Repositioning Approach for Targeting Oncogenic Transcription Factors]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/16<br /> |style=&quot;padding:.4em;&quot;|2016-17<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27309802 The landscape of accessible chromatin in mammalian preimplantation embryos]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/8<br /> |style=&quot;padding:.4em;&quot;|2016-16<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27064255 Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/1<br /> |style=&quot;padding:.4em;&quot;|2016-15<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27040498 Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/25<br /> |style=&quot;padding:.4em;&quot;|2016-14<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=integration+of+summary+data+from+gwas+and+eqtl+studies Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/18<br /> |style=&quot;padding:.4em;&quot;|2016-13<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23624555 Identification of transcriptional regulators in the mouse immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/8<br /> |style=&quot;padding:.4em;&quot;|2016-12<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26619012 Mapping the effects of drugs on the immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-11<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26186195 Elucidating compound mechanism of action by network perturbation analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/1<br /> |style=&quot;padding:.4em;&quot;|2016-10<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26854917 Integrative approaches for large-scale transcriptome-wide association studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-9<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26950747 Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/18<br /> |style=&quot;padding:.4em;&quot;|2016-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27013732 Survey of variation in human transcription factors reveals prevalent DNA binding changes]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-7<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26502339 Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/11<br /> |style=&quot;padding:.4em;&quot;|2016-6<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25171417 Predicting Cancer-specific vulnerability via data-driven detection of synthetic lethality]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-5<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23467089 Dynamic regulatory network controlling Th17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/4<br /> |style=&quot;padding:.4em;&quot;|2016-4<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25853550 Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-3<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26618344 Regulators of genetic risk of breast cancer identified by integrative network analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/4/27<br /> |style=&quot;padding:.4em;&quot;|2016-2<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26780608 A predictive computational framework for direct reprogramming between human cell types]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-1<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25126793 CellNet: Network biology applied to stem cell engineering]<br /> |}<br /> <br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2015<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/11<br /> |style=&quot;padding:.4em;&quot;|2015-55<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/24/2/340.long Improved exome prioritization of disease genes through cross-species phenotype comparison.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-54<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0002929714001128 Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/04<br /> |style=&quot;padding:.4em;&quot;|2015-53<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2656.html eXtasy: variant prioritization by genomic data fusion.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-52<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/21/9/1529.long A probabilistic disease-gene finder for personal genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/28<br /> |style=&quot;padding:.4em;&quot;|2015-51<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n12/full/ng.3141.html Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-50<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v28/n5/full/nbt.1630.html GREAT improves functional interpretation of cis-regulatory regions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/21<br /> |style=&quot;padding:.4em;&quot;|2015-49<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2832.html Functional annotation of noncoding sequence variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-48<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/15/10/480 FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/14<br /> |style=&quot;padding:.4em;&quot;|2015-47<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v12/n2/full/nmeth.3215.html Selecting causal genes from genome-wide association studies via functionally coherent subnetworks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-46<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2015/150119/ncomms6890/full/ncomms6890.html Biological interpretation of genome-wide association studies using predicted gene functions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/05/07<br /> |style=&quot;padding:.4em;&quot;|2015-45<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/140626/ncomms5212/full/ncomms5212.html Human symptoms-disease network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-44<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413010246 A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-43<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6224/1257601.long Uncovering disease-disease relationships through the incomplete interactome.]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/30<br /> |style=&quot;padding:.4em;&quot;|2015-42<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/142.long The discovery of integrated gene networks for autism and related disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-41<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/12/774.long Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/04/23<br /> |style=&quot;padding:.4em;&quot;|2015-40<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature13990.html Dissecting neural differentiation regulatory networks through epigenetic footprinting.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-39<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14221.html Cell-of-origin chromatin organization shapes the mutational landscape of cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-38<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14248.html Integrative analysis of 111 reference human epigenomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/09<br /> |style=&quot;padding:.4em;&quot;|2015-37<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/246.long Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-36<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014974 A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/02<br /> |style=&quot;padding:.4em;&quot;|2015-35<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v14/n6/full/nrg3454.html Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-34<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6225/1010.long Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/26<br /> |style=&quot;padding:.4em;&quot;|2015-33<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/257.long Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/41.long Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/19<br /> |style=&quot;padding:.4em;&quot;|2015-31<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3154.html Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-30<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v16/n3/full/nrg3833.html Computational and analytical challenges in single-cell transcriptomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/12<br /> |style=&quot;padding:.4em;&quot;|2015-29<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867415000136 Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-28<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v500/n7464/full/nature12506.html Richness of human gut microbiome correlates with metabolic markers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-27<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v490/n7418/full/nature11450.html A metagenome-wide association study of gut microbiota in type 2 diabetes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/09<br /> |style=&quot;padding:.4em;&quot;|2015-26<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326 Practical guidelines for the comprehensive analysis of ChIP-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-25<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/5/777.long Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-24<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/11/760.long Rapid neurogenesis through transcriptional activation in human stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/02<br /> |style=&quot;padding:.4em;&quot;|2015-23<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414011787 Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-22<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004237 Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v45/n6/full/ng.2653.html The Genotype-Tissue Expression (GTEx) project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/24<br /> |style=&quot;padding:.4em;&quot;|2015-20<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/346/6212/1007.long Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-19<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13985.html Principles of regulatory information conservation between mouse and human.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-18<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13972.html Conservation of trans-acting circuitry during mammalian regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/16<br /> |style=&quot;padding:.4em;&quot;|2015-17<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13835.html Genetic and epigenetic fine mapping of causal autoimmune disease variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-16<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n3/full/ng.2892.html A general framework for estimating the relative pathogenicity of human genetic variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-15<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003825 A probabilistic model to predict clinical phenotypic traits from genome sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2015/02/02<br /> |style=&quot;padding:.4em;&quot;|2015-14<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/22/E2329.long Relating the metatranscriptome and metagenome of the human gut.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-13<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v513/n7516/full/nature13568.html Alterations of the human gut microbiome in liver cirrhosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-12<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2942.html An integrated catalog of reference genes in the human gut microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-11<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2939.html Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=5|2015/01/26<br /> |style=&quot;padding:.4em;&quot;|2015-10<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/9/1/666.long Computational meta'omics for microbial community studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-09<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/5/7/65 Functional profiling of the gut microbiome in disease-associated inflammation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-08<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S016895251200145X Biodiversity and functional genomics in the human microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-07<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002808 Chapter 12: Human Microbiome Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-06<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.cell.com/cell/abstract/S0092-8674%2814%2900864-2 Conducting a Microbiome Study.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/01/12<br /> |style=&quot;padding:.4em;&quot;|2015-05<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/141210/ncomms6522/full/ncomms6522.html Small RNA changes en route to distinct cellular states of induced pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-04<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14046.html Genome-wide characterization of the routes to pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-03<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14047.html Divergent reprogramming routes lead to alternative stem-cell states.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/01/05<br /> |style=&quot;padding:.4em;&quot;|2015-02<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/21/E2191.long Global view of enhancer-promoter interactome in human cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-01<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://nar.oxfordjournals.org/content/41/22/10391.long Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2014<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/23<br /> |style=&quot;padding:.4em;&quot;|2014-41<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413012270 Super-enhancers in the control of cell identity and disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-40<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413003929 Master transcription factors and mediator establish super-enhancers at key cell identity genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2014/12/09<br /> |style=&quot;padding:.4em;&quot;|2014-39<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414013713 Unraveling the biology of a fungal meningitis pathogen using chemical genetics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-38<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014226 A proteome-scale map of the human interactome network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-37<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/9/752.long The role of the interactome in the maintenance of deleterious variability in human populations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-36<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/342/6154/1235587.long Integrative annotation of variants from 1092 humans: application to cancer genomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/02<br /> |style=&quot;padding:.4em;&quot;|2014-35<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/8/1319.long Mapping functional transcription factor networks from gene expression data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-34<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v15/n7/full/nrg3684.html In pursuit of design principles of regulatory sequences.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/25<br /> |style=&quot;padding:.4em;&quot;|2014-33<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/3/6/36 Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-32<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S009286741300891X Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/18<br /> |style=&quot;padding:.4em;&quot;|2014-31<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/6/8/64 The 'dnet' approach promotes emerging research on cancer patient survival.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-30<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414010368 Determination and inference of eukaryotic transcription factor sequence specificity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/11/11<br /> |style=&quot;padding:.4em;&quot;|2014-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/110/16/6412.long Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-28<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009350 Dissecting engineered cell types and enhancing cell fate conversion via CellNet.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-27<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009349 CellNet: network biology applied to stem cell engineering.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/04<br /> |style=&quot;padding:.4em;&quot;|2014-26<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009775 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-25<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n9/full/nmeth.3046.html Phen-Gen: combining phenotype and genotype to analyze rare disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/10/28<br /> |style=&quot;padding:.4em;&quot;|2014-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-23<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n9/full/ng.3051.html Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/30<br /> |style=&quot;padding:.4em;&quot;|2014-22<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2651.html Network-based stratification of tumor mutations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-21<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414001457 Synonymous mutations frequently act as driver mutations in human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/23<br /> |style=&quot;padding:.4em;&quot;|2014-20<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003460 VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-19<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/13/12/R124 DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/16<br /> |style=&quot;padding:.4em;&quot;|2014-18<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/14/5/R52 Integrated analysis of recurrent properties of cancer genes to identify novel drivers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-17<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/4/11/89 Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/02<br /> |style=&quot;padding:.4em;&quot;|2014-16<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23228031 A network module-based method for identifying cancer prognostic signatures.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-15<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24429628 Realizing the promise of cancer predisposition genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/19<br /> |style=&quot;padding:.4em;&quot;|2014-14<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24952901 Assessing the clinical utility of cancer genomic and proteomic data across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-13<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24132290 Mutational landscape and significance across 12 major cancer types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/12<br /> |style=&quot;padding:.4em;&quot;|2014-12<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23945592 Signatures of mutational processes in human cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-11<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24390350 Discovery and saturation analysis of cancer genes across 21 tumour types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/05<br /> |style=&quot;padding:.4em;&quot;|2014-10<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24084849 Comprehensive identification of mutational cancer driver genes across 12 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-9<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24037244 IntOGen-mutations identifies cancer drivers across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/29<br /> |style=&quot;padding:.4em;&quot;|2014-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23900255 Computational approaches to identify functional genetic variants in cancer genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-7<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23770567 Mutational heterogeneity in cancer and the search for new cancer-associated genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-6<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n4/abs/nmeth.2891.html Cancer genomes: discerning drivers from passengers]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/22<br /> |style=&quot;padding:.4em;&quot;|2014-5<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24071849 The Cancer Genome Atlas Pan-Cancer analysis project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-4<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23539594 Cancer genome landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-3<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=21900272 Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/07/15<br /> |style=&quot;padding:.4em;&quot;|2014-2<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670764 A promoter-level mammalian expression atlas.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-1<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670763 An atlas of active enhancers across human cell types and tissues.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2013<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/26<br /> |style=&quot;padding:.4em;&quot;|2013-31<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://nar.oxfordjournals.org/content/40/16/7690.long Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-30<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n4/full/nbt.2519.html Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/04<br /> |style=&quot;padding:.4em;&quot;|2013-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[https://www.cell.com/abstract/S0092-8674(13)00439-X Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-28<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n3/full/nbt.2514.html Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/28<br /> |style=&quot;padding:.4em;&quot;|2013-27<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.pnas.org/content/102/38/13544.long Discovering statistically significant pathways in expression profiling studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-26<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0058977 Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/21<br /> |style=&quot;padding:.4em;&quot;|2013-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v496/n7446/full/nature11981.html Dynamic regulatory network controlling TH17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-24<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/14<br /> |style=&quot;padding:.4em;&quot;|2013-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-22<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|'''2013/05/07'''<br /> |style=&quot;padding:.4em;&quot;|2013-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-20<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/09<br /> |style=&quot;padding:.4em;&quot;|2013-19<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/02<br /> |style=&quot;padding:.4em;&quot;|2013-18<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot; |2013/03/12<br /> |style=&quot;padding:.4em;&quot;|2013-17<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/03/05<br /> |style=&quot;padding:.4em;&quot;|2013-16<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/21<br /> |style=&quot;padding:.4em;&quot;|2013-15<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-14<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-13<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/15<br /> |style=&quot;padding:.4em;&quot;|2013-12<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-11<br /> |style=&quot;padding:.4em;&quot;| JE Shim, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-10<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/08<br /> |style=&quot;padding:.4em;&quot;|2013-09<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-08<br /> |style=&quot;padding:.4em;&quot;|JE Shim, CY Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-07<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/01/25<br /> |style=&quot;padding:.4em;&quot;|2013-06<br /> |style=&quot;padding:.4em;&quot;|HJ Han, '''JH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-05<br /> |style=&quot;padding:.4em;&quot;|'''ER Kim''', HS Shim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-04<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/01/18<br /> |style=&quot;padding:.4em;&quot;|2013-03<br /> |style=&quot;padding:.4em;&quot;|KS Kim, '''TH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-02<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/01/11<br /> |style=&quot;padding:.4em;&quot;|2013-01<br /> |style=&quot;padding:.4em;&quot;| '''JE Shim''', CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]<br /> |}<br /> <br /> 2012<br /> {|border =&quot;1&quot;<br /> |style=&quot;color:black; background-color:#dcdcdc; padding:5px;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper title<br /> |-<br /> |rowspan = &quot;1&quot;|2013/01/11<br /> |align =&quot;center&quot;|2012-81<br /> |[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]<br /> |-<br /> |rowspan = &quot;1&quot;|2012/12/04<br /> |align =&quot;center&quot;|2012-80<br /> |[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/20<br /> | align=&quot;center&quot;|2012-79<br /> |[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]<br /> |-<br /> | align=&quot;center&quot;|2012-78<br /> |[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/06<br /> | align=&quot;center&quot;|2012-77<br /> |[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]<br /> |-<br /> | align=&quot;center&quot;|2012-76<br /> |[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] <br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/19<br /> | align=&quot;center&quot;|2012-75<br /> |[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]<br /> |-<br /> | align=&quot;center&quot;|2012-74 <br /> |[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] <br /> |-<br /> | align=&quot;center&quot;|2012-73<br /> |[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]<br /> |-<br /> | align=&quot;center&quot;|2012-72<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]<br /> |-<br /> | align=&quot;center&quot;|2012-71<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]<br /> |-<br /> | align=&quot;center&quot;|2012-70<br /> |[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]<br /> |-<br /> |rowspan = &quot;8&quot; |2012/07/16<br /> | align=&quot;center&quot;|2012-69<br /> |[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]<br /> |-<br /> | align=&quot;center&quot;|2012-66<br /> |[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;TH Kim)The Sequence Alignment/Map format and SAMtools]<br /> |-<br /> | align=&quot;center&quot;|2012-65<br /> |[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;TH Kim)The Variant Call Format and VCFtools]<br /> |-<br /> | align=&quot;center&quot;|2012-64<br /> |[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]<br /> |-<br /> |align=&quot;center&quot;|2012-63<br /> |[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-62<br /> |[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]<br /> |-<br /> |align=&quot;center&quot;|2012-61<br /> |[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]<br /> |-<br /> |align=&quot;center&quot;|2012-60<br /> |[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/07/13<br /> |align=&quot;center&quot;|2012-59<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]<br /> |-<br /> | align=&quot;center&quot;|2012-58<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;HJ Kim)A framework for human microbiome research]<br /> |-<br /> |align=&quot;center&quot;|2012-57<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]<br /> |-<br /> |rowspan = &quot;4&quot; |2012/07/12<br /> |align=&quot;center&quot;|2012-56<br /> |[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]<br /> |-<br /> |align=&quot;center&quot;|2012-55<br /> |[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]<br /> |-<br /> | align=&quot;center&quot;|2012-54<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-53<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/09<br /> |align=&quot;center&quot;|2012-52<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-51<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]<br /> |-<br /> | align=&quot;center&quot;|2012-50<br /> |[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]<br /> |-<br /> |align=&quot;center&quot;|2012-49<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]<br /> |-<br /> |align=&quot;center&quot;|2012-48<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]<br /> |-<br /> |align=&quot;center&quot;|2012-47<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/06<br /> | align=&quot;center&quot;|2012-46<br /> |[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]<br /> |-<br /> |align=&quot;center&quot;|2012-45<br /> |[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]<br /> |-<br /> |align=&quot;center&quot;|2012-44<br /> |[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]<br /> |-<br /> |align=&quot;center&quot;|2012-43<br /> |[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]<br /> |-<br /> | align=&quot;center&quot;|2012-42<br /> |[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]<br /> |-<br /> |align=&quot;center&quot;|2012-41<br /> |[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;KS Kim)Exome sequencing and the genetic basis of complex traits]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/02<br /> |align=&quot;center&quot;|2012-40<br /> |[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-39<br /> |[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;TH Kim)De novo discovery of mutated driver pathways in cancer]<br /> |-<br /> | align=&quot;center&quot;|2012-38<br /> |[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]<br /> |-<br /> |align=&quot;center&quot;|2012-37<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]<br /> |-<br /> |align=&quot;center&quot;|2012-36<br /> |[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]<br /> |-<br /> |align=&quot;center&quot;|2012-35<br /> |[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;HJ Kim)Detecting Novel Associations in Large Data Sets]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/03/05<br /> | align=&quot;center&quot;|2012-34<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]<br /> |-<br /> |align=&quot;center&quot;|2012-33<br /> |[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;Ju)Differential expression analysis for sequence count data]<br /> |-<br /> |align=&quot;center&quot;|2012-32<br /> |[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]<br /> |-<br /> |rowspan = &quot;7&quot; |2012/02/27&lt;br /&gt;2012/02/28<br /> | align=&quot;center&quot;|2012-31<br /> |[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]<br /> |-<br /> |align=&quot;center&quot;|2012-30<br /> |[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]<br /> |-<br /> |align=&quot;center&quot;|2012-29<br /> |[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]<br /> |-<br /> |align=&quot;center&quot;|2012-28<br /> |[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]<br /> |-<br /> |align=&quot;center&quot;|2012-27<br /> |[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]<br /> |-<br /> |align=&quot;center&quot;|2012-26<br /> |[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]<br /> |-<br /> |align=&quot;center&quot;|2012-25<br /> |[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;Shin)TopHat: discovering splice junctions with RNA-Seq]<br /> |-<br /> |rowspan = &quot;5&quot; 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background-color:#dcdcdc;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_title<br /> |-<br /> |rowspan = &quot;6&quot; |2011/11/28<br /> |align=&quot;center&quot;|2011-49<br /> |[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]<br /> |-<br /> |align=&quot;center&quot;|2011-48<br /> |[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-47<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]<br /> |-<br /> |align=&quot;center&quot;|2011-46<br /> |[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]<br /> |-<br /> |align=&quot;center&quot;|2011-45<br /> |[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-44<br /> |[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]<br /> |-<br /> |rowspan = &quot;3&quot; 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|2010/04/07<br /> |align=&quot;center&quot;|2010-16<br /> |[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]<br /> |-<br /> |align=&quot;center&quot;|2010-15<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]<br /> |-<br /> |rowspan=&quot;2&quot;|2010/03/31<br /> |align=&quot;center&quot;|2010-14<br /> |[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]<br /> |-<br /> |align=&quot;center&quot;|2010-13<br /> |[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]<br /> |-<br /> |2010/03/24<br /> |align=&quot;center&quot;|2010-12<br /> |[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]<br /> |-<br /> |2010/01/18<br /> |align=&quot;center&quot;|2010-11<br /> |JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies<br /> |-<br /> |2010/01/16<br /> |align=&quot;center&quot;|2010-10<br /> |systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells<br /> |-<br /> |2010/01/15<br /> |align=&quot;center&quot;|2010-09<br /> |distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions<br /> |-<br /> |2010/01/14<br /> |align=&quot;center&quot;|2010-08<br /> |chemogenomic_profiling_predicts_antifungal_synergies<br /> |-<br /> |2010/01/13<br /> |align=&quot;center&quot;|2010-07<br /> |edgetic_perturbation_models_of_human_inherited_disorders<br /> |-<br /> |2010/01/12<br /> |align=&quot;center&quot;|2010-06<br /> |analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans<br /> |-<br /> |2010/01/11<br /> |align=&quot;center&quot;|2010-05<br /> |predicting_new_molecular_targets_for_known_drugs.pdf<br /> Reference:SEA(Similarity Ensemble Approach)<br /> |-<br /> |2010/01/09<br /> |align=&quot;center&quot;|2010-04<br /> |harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance<br /> |-<br /> |2010/01/08<br /> |align=&quot;center&quot;|2010-03<br /> |an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer<br /> |-<br /> |2010/01/07<br /> |align=&quot;center&quot;|2010-02<br /> |a_phenotypic_profile_of_the_candida_albicans_regulatory_network<br /> |-<br /> |2010/01/06<br /> |align=&quot;center&quot;|2010-01<br /> |a_global_view_of_protein_expression_in_human_cells_tissues_and_organs<br /> |}<br /> <br /> <br /> <br /> <br /> &lt;!--<br /> {| border =&quot;1&quot;<br /> {| border =&quot;1&quot;<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |March 5 Mon, 2012<br /> |rowspan = &quot;3&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]<br /> |-<br /> |[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;Ju)Differential expression analysis for sequence count data]<br /> |-<br /> |[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]<br /> |-<br /> |rowspan = &quot;7&quot; |***<br /> |rowspan = &quot;7&quot; |February 27 Mon~28 Tue, 2012<br /> |rowspan = &quot;7&quot; | <br /> |[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]<br /> |-<br /> |[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]<br /> |-<br /> |[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]<br /> |-<br /> |[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]<br /> |-<br /> |[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]<br /> |-<br /> |[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]<br /> |-<br /> |[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;Shin)TopHat: discovering splice junctions with RNA-Seq]<br /> |-<br /> |rowspan = &quot;5&quot; 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| <br /> |rowspan = &quot;2&quot; |September 5 Mon, 2011<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]<br /> |-<br /> |SH Hwang<br /> |[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]<br /> |-<br /> |rowspan = &quot;2&quot; | <br /> |rowspan = &quot;2&quot; | August 22 Mon, 2011<br /> |ER Kim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]<br /> |-<br /> |<br /> |June 20 Mon, 2011<br /> |JH Shin<br /> |[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 30 Mon, 2011<br /> |rowspan = &quot;2&quot; | HH Kim<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]<br /> |-<br /> <br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 16 Mon, 2011<br /> |rowspan = &quot;2&quot; | AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]<br /> |-<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |April 25 Mon, 2011<br /> |rowspan = &quot;3&quot; |S Beck<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 11 Mon, 2011<br /> |JE Shim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]<br /> |-<br /> |T Lee<br /> |***Changed!***<br /> [http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 28 Mon, 2011<br /> |rowspan = &quot;2&quot;|TY Oh<br /> |[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 14 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6WSN-51SFHJD-1&amp;_user=44062&amp;_coverDate=01%2F07%2F2011&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;searchtype=a phenotypic landscape of a bacterial cell]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]<br /> |-<br /> <br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|February 28 Mon, 2011<br /> |KS Kim<br /> |[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]<br /> |-<br /> |HJ Han<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]<br /> |-<br /> |<br /> |February 21 Mon, 2011<br /> |MH Lee<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]<br /> |-<br /> |<br /> |February 14 Mon, 2011<br /> |AR Cho<br /> |[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|January 31 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]<br /> |-<br /> |[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot; | December 27 Mon, 2010<br /> |ER Kim<br /> |[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 15 Mon, 2010<br /> |AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]<br /> |-<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B8JDC-50J4MRJ-2&amp;_user=44062&amp;_coverDate=10%2F10%2F2010&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 1 Mon, 2010<br /> |HH Kim<br /> |[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]<br /> |-<br /> |JH Shin<br /> |[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]<br /> |-<br /> |<br /> |October 11 Mon, 2010<br /> |JE Shim<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]<br /> |-<br /> |<br /> |September 13 Mon, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]<br /> [http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]<br /> |-<br /> |<br /> |May 26 Wed, 2010<br /> |AR Cho<br /> |[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]<br /> |-<br /> |<br /> |May 19 Wed, 2010<br /> |SG Ji<br /> |[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]<br /> |-<br /> |<br /> |April 21 Wed, 2010<br /> |JH Shin<br /> |[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]<br /> |-<br /> |<br /> |April 14 Wed, 2010<br /> |TY Oh<br /> |[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 7 Wed, 2010<br /> |HHkim<br /> |<br /> [http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]<br /> |-<br /> |T Lee<br /> |<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]<br /> |-<br /> |<br /> |Mar 31 Wed, 2010<br /> |JE Shim<br /> |[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]<br /> [http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]<br /> |-<br /> |<br /> |Mar 24 Wed, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]<br /> |-<br /> |<br /> |Jan 18 Mon, 2010<br /> |TY Oh(T Lee)<br /> |JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies<br /> |-<br /> |<br /> |Jan 16 Sat, 2010<br /> |JE Shim(MH Lee)<br /> |systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells<br /> |-<br /> |<br /> |Jan 15 Fri, 2010<br /> |SG Ji<br /> |distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions<br /> |-<br /> |<br /> |Jan 14 Thu, 2010<br /> |HH kim<br /> |chemogenomic_profiling_predicts_antifungal_synergies<br /> |-<br /> |<br /> |Jan 13 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |edgetic_perturbation_models_of_human_inherited_disorders<br /> |-<br /> |<br /> |Jan 12 Tue, 2010<br /> |TY Oh(T Lee)<br /> |analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans<br /> |-<br /> |<br /> |Jan 11 Mon, 2010<br /> |JE Shim(MH Lee)<br /> |predicting_new_molecular_targets_for_known_drugs.pdf<br /> Reference:SEA(Similarity Ensemble Approach)<br /> |-<br /> |<br /> |Jan 09 Sat, 2010<br /> |SG Ji<br /> |harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance<br /> |-<br /> |<br /> |Jan 08 Fri, 2010<br /> |AR Cho<br /> |an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer<br /> |-<br /> |<br /> |Jan 07 Thu, 2010<br /> |HH Kim <br /> |a_phenotypic_profile_of_the_candida_albicans_regulatory_network<br /> |-<br /> |<br /> |Jan 06 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |a_global_view_of_protein_expression_in_human_cells_tissues_and_organs<br /> |}<br /> --&gt;</div>

Junha92 https://netbiolab.org/wiki/index.php?title=Journal_Club&diff=5092 2019-09-16T08:33:41Z

<p>Junha92: </p> <hr /> <div>{|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2019-2nd semester<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; stype=&quot;padding:.4em&quot; | Team<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/15<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-47<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303488 Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-46<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0722-6 Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/08<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-49<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41587-019-0206-z Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-48<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/739011v1 Assessment of computational methods for the analysis of single-cell ATAC-seq data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/01<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-47<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303026 Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-46<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307731 Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/24<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-45<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://genome.cshlp.org/content/early/2019/04/01/gr.243725.118 The accessible chromatin landscape of the murine hippocampus at single-cell resolution]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-44<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741830446X Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/17<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-43<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://science.sciencemag.org/content/365/6449/eaau4735 A sparse covarying unit that describes healthy and impaired human gut microbiota development]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-42<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307810 Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/10<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-41<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307329?via%3Dihub Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-40<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nbt.4042 Multiplexed droplet single-cell RNA-sequencing using natural genetic variation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/03<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-39<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S193131281930352X?via%3Dihub The Landscape of Genetic Content in the Gut and Oral Human Microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-38<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307755?via%3Dihub Benchmarking Metagenomics Tools for Taxonomic Classification]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2019<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/20<br /> |style=&quot;padding:.4em;&quot;|19-37<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/719088v1 Coexpression uncovers a unified single-cell transcriptomic landscape]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-36<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/586859v1 Single-cell interactomes of the human brain reveal cell-type specific convergence of brain disorders]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/08/14<br /> |style=&quot;padding:.4em;&quot;|19-35<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004075 Proportionality: a valid alternative to correlation for relative data]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-34<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41598-017-16520-0 propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-33<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41591-018-0157-9 Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/13<br /> |style=&quot;padding:.4em;&quot;|19-32<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41592-018-0254-1 A test metric for assessing single-cell RNA-seq batch correction]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-31<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419305598 Comprehensive Integration of Single-Cell Data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/08<br /> |style=&quot;padding:.4em;&quot;|19-30<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418313941 Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831242X High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/07<br /> |style=&quot;padding:.4em;&quot;|19-28<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/555557v1 A single-cell reference map for human blood and tissue T cell activation reveals functional states in health and disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-27<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831568X Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/30<br /> |style=&quot;padding:.4em;&quot;|19-26<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nm.4466 High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-25<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418311784 A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/23<br /> |style=&quot;padding:.4em;&quot;|19-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26006008 COMPASS identifies T-cell subsets correlated with clinical outcomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-23<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/ncomms14825 Sensitive detection of rare disease-associated cell subsets via representation learning]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/30<br /> |style=&quot;padding:.4em;&quot;|19-22<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936547 Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-21<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936548 Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-20<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30664783 Microbial network disturbances in relapsing refractory Crohn's disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/23<br /> |style=&quot;padding:.4em;&quot;|19-19<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30867587 New insights from uncultivated genomes of the global human gut microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30745586 A new genomic blueprint of the human gut microbiota]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-17<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30661755 Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/16<br /> |style=&quot;padding:.4em;&quot;|19-16<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29311644 Dynamics of metatranscription in the inflammatory bowel disease gut microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-15<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29335555 Metatranscriptome of human faecal microbial communities in a cohort of adult men.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/09<br /> |style=&quot;padding:.4em;&quot;|19-14<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30193113 Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-13<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30193112 Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/02<br /> |style=&quot;padding:.4em;&quot;|19-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30753825 Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30778252 Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/11<br /> |style=&quot;padding:.4em;&quot;|19-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30479382 Lineage tracking reveals dynamic relationships of T cells in colorectal cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30523328 Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/4<br /> |style=&quot;padding:.4em;&quot;|19-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942092 Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942094 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/28<br /> |style=&quot;padding:.4em;&quot;|19-6<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28319088 Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-5<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28622514 Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/3/21<br /> |style=&quot;padding:.4em;&quot;|19-4<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29988129 Phenotype molding of stromal cells in the lung tumor microenvironment.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787436 A single-cell molecular map of mouse gastrulation and early organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787437 The single-cell transcriptional landscape of mammalian organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/14<br /> |style=&quot;padding:.4em;&quot;|19-2<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29961579 Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29198524 Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2018<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/14<br /> |style=&quot;padding:.4em;&quot;|18-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+pan-cancer+analysis+of+enhancer+expression+in+nearly+9000+patient+samples A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Machine+learning+identifies+stemness+features+associated+with+oncogenic+dedifferentiation Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/07<br /> |style=&quot;padding:.4em;&quot;|18-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Developmental+and+oncogenic+programs+in+H3K27M+gliomas+dissected+by+single-cell+RNA-seq Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Chemoresistance+evolution+in+triple-negative+breast+cancer+delineated+by+single-cell+sequencing Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/31<br /> |style=&quot;padding:.4em;&quot;|18-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Mapping+human+pluripotent+stem+cell+differentiation+pathways+using+high+throughput+single-cell+RNA-sequencing Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+single-cell+RNA-seq+survey+of+the+developmental+landscape+of+the+human+prefrontal+cortex A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/24<br /> |style=&quot;padding:.4em;&quot;|18-6<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Single-cell+RNA+sequencing+identifies+celltype-specific+cis-eQTLs+and+co-expression+QTLs Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-5<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=FOCS%3A+a+novel+method+for+analyzing+enhancer+and+gene+activity+patterns+infers+an+extensive+enhancer-promoter+map FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer-promoter map.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/17<br /> |style=&quot;padding:.4em;&quot;|18-4<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29149608 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-3<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29610481 A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/10<br /> |style=&quot;padding:.4em;&quot;|18-2<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Inferring+regulatory+element+landscapes+and+transcription+factor+networks+from+cancer+methylomes Inferring regulatory element landscapes and transcription factor networks from cancer methylomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-1<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28129544 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2017<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/28<br /> |style=&quot;padding:.4em;&quot;|17-36<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28104840 Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-35<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27240091 Landscape of tumor-infiltrating T cell repertoire of human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/14<br /> |style=&quot;padding:.4em;&quot;|17-34<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2015/09/01/025908 The landscape of T cell infiltration in human cancer and its association with antigen presenting gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-33<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.08.052 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/07<br /> |style=&quot;padding:.4em;&quot;|17-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.tandfonline.com/doi/full/10.1080/2162402X.2016.1253654 Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-31<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.03.075 Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/31<br /> |style=&quot;padding:.4em;&quot;|17-30<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.02.065 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-29<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.019 Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/24<br /> |style=&quot;padding:.4em;&quot;|17-28<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.12.022 Systemic Immunity Is Required for Effective Cencer Immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-27<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.020 Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/17<br /> |style=&quot;padding:.4em;&quot;|17-26<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.018 Host and Environmental Factors Influencing Individual Human Cytokine Responses.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-25<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.017 A Functional Genomics Approach to Understand Variation in Cytokine Production in Humans.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/26<br /> |style=&quot;padding:.4em;&quot;|17-24<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2FNMETH.4177 Pooled CRISPR screening with single-cell transcriptome readout.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-23<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.039 Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/12<br /> |style=&quot;padding:.4em;&quot;|17-22<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.038 Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-21<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnbt.3569 Wishbone identifies bifurcating developmental trajectories from single-cell data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/05<br /> |style=&quot;padding:.4em;&quot;|17-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2017/02/21/110668 Reversed graph embedding resolves complex single-cell developmental trajectories.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-19<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnmeth.4150 Single-cell mRNA quantification and differential analysis with Census.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/29<br /> |style=&quot;padding:.4em;&quot;|17-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.060 Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-17<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26051941 Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/22<br /> |style=&quot;padding:.4em;&quot;|17-16<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27580035 Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-15<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27281220 Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/15<br /> |style=&quot;padding:.4em;&quot;|17-14<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1126%2Fscience.aad0501 Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-13<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26084335 Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/28<br /> |style=&quot;padding:.4em;&quot;|17-12<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27824113 A Comprehensive Characterization of the Function of LincRNAs in Transcriptional Regulation Through Long-Range Chromatin Interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-11<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27851969 Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/21<br /> |style=&quot;padding:.4em;&quot;|17-10<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/12/30/097451 Convergence of dispersed regulatory mutations predicts driver genes in prostate cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-09<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27723759 Chromatin structure-based prediction of recurrent noncoding mutations in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/07<br /> |style=&quot;padding:.4em;&quot;|17-08<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/17/088286 Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-07<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/28/090134 Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/31<br /> |style=&quot;padding:.4em;&quot;|17-06<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27912059 Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/24<br /> |style=&quot;padding:.4em;&quot;|17-05<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27851914 Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/01/17<br /> |style=&quot;padding:.4em;&quot;|17-04<br /> |style=&quot;padding:.4em;&quot;|HJ Han <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/25938943 Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-03<br /> |style=&quot;padding:.4em;&quot;|EB Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27306882 CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/10<br /> |style=&quot;padding:.4em;&quot;|17-02<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26527291 ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/03<br /> |style=&quot;padding:.4em;&quot;|17-01<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26287467 Single-cell messenger RNA sequencing reveals rare intestinal cell types]<br /> |-<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2016<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/27<br /> |style=&quot;padding:.4em;&quot;|2016-31<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25664528 Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/6<br /> |style=&quot;padding:.4em;&quot;|2016-30<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26299571 Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/29<br /> |style=&quot;padding:.4em;&quot;|2016-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24658644 The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/22<br /> |style=&quot;padding:.4em;&quot;|2016-28<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26887813 Classification of low quality cells from single-cell RNA-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/15<br /> |style=&quot;padding:.4em;&quot;|2016-27<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000487 Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/8<br /> |style=&quot;padding:.4em;&quot;|2016-26<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000488 Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/1<br /> |style=&quot;padding:.4em;&quot;|2016-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27426982 Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/25<br /> |style=&quot;padding:.4em;&quot;|2016-24<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27549193 Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/11<br /> |style=&quot;padding:.4em;&quot;|2016-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=sidespread+parainflammation Widespread parainflammation in human cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/27<br /> |style=&quot;padding:.4em;&quot;|2016-22<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27535533 Analysis of protein-coding genetic variation in 60,706 humans]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/20<br /> |style=&quot;padding:.4em;&quot;|2016-21<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> Functional characterization of somatic mutations in cancer using network-based inference of protein activity<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27322546 pubmed]<br /> [http://www.nature.com/ng/journal/v48/n8/full/ng.3593.html fulltext]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/13<br /> |style=&quot;padding:.4em;&quot;|2016-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=exploiting+single-cell+expression+to+characterize Exploiting single-cell expression to characterize co-expression replicability.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/6<br /> |style=&quot;padding:.4em;&quot;|2016-19<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26940869 Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/31<br /> |style=&quot;padding:.4em;&quot;|2016-18<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27264179 A Computational Drug Repositioning Approach for Targeting Oncogenic Transcription Factors]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/16<br /> |style=&quot;padding:.4em;&quot;|2016-17<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27309802 The landscape of accessible chromatin in mammalian preimplantation embryos]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/8<br /> |style=&quot;padding:.4em;&quot;|2016-16<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27064255 Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/1<br /> |style=&quot;padding:.4em;&quot;|2016-15<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27040498 Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/25<br /> |style=&quot;padding:.4em;&quot;|2016-14<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=integration+of+summary+data+from+gwas+and+eqtl+studies Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/18<br /> |style=&quot;padding:.4em;&quot;|2016-13<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23624555 Identification of transcriptional regulators in the mouse immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/8<br /> |style=&quot;padding:.4em;&quot;|2016-12<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26619012 Mapping the effects of drugs on the immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-11<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26186195 Elucidating compound mechanism of action by network perturbation analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/1<br /> |style=&quot;padding:.4em;&quot;|2016-10<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26854917 Integrative approaches for large-scale transcriptome-wide association studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-9<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26950747 Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/18<br /> |style=&quot;padding:.4em;&quot;|2016-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27013732 Survey of variation in human transcription factors reveals prevalent DNA binding changes]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-7<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26502339 Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/11<br /> |style=&quot;padding:.4em;&quot;|2016-6<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25171417 Predicting Cancer-specific vulnerability via data-driven detection of synthetic lethality]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-5<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23467089 Dynamic regulatory network controlling Th17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/4<br /> |style=&quot;padding:.4em;&quot;|2016-4<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25853550 Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-3<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26618344 Regulators of genetic risk of breast cancer identified by integrative network analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/4/27<br /> |style=&quot;padding:.4em;&quot;|2016-2<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26780608 A predictive computational framework for direct reprogramming between human cell types]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-1<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25126793 CellNet: Network biology applied to stem cell engineering]<br /> |}<br /> <br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2015<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/11<br /> |style=&quot;padding:.4em;&quot;|2015-55<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/24/2/340.long Improved exome prioritization of disease genes through cross-species phenotype comparison.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-54<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0002929714001128 Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/04<br /> |style=&quot;padding:.4em;&quot;|2015-53<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2656.html eXtasy: variant prioritization by genomic data fusion.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-52<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/21/9/1529.long A probabilistic disease-gene finder for personal genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/28<br /> |style=&quot;padding:.4em;&quot;|2015-51<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n12/full/ng.3141.html Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-50<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v28/n5/full/nbt.1630.html GREAT improves functional interpretation of cis-regulatory regions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/21<br /> |style=&quot;padding:.4em;&quot;|2015-49<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2832.html Functional annotation of noncoding sequence variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-48<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/15/10/480 FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/14<br /> |style=&quot;padding:.4em;&quot;|2015-47<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v12/n2/full/nmeth.3215.html Selecting causal genes from genome-wide association studies via functionally coherent subnetworks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-46<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2015/150119/ncomms6890/full/ncomms6890.html Biological interpretation of genome-wide association studies using predicted gene functions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/05/07<br /> |style=&quot;padding:.4em;&quot;|2015-45<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/140626/ncomms5212/full/ncomms5212.html Human symptoms-disease network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-44<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413010246 A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-43<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6224/1257601.long Uncovering disease-disease relationships through the incomplete interactome.]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/30<br /> |style=&quot;padding:.4em;&quot;|2015-42<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/142.long The discovery of integrated gene networks for autism and related disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-41<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/12/774.long Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/04/23<br /> |style=&quot;padding:.4em;&quot;|2015-40<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature13990.html Dissecting neural differentiation regulatory networks through epigenetic footprinting.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-39<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14221.html Cell-of-origin chromatin organization shapes the mutational landscape of cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-38<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14248.html Integrative analysis of 111 reference human epigenomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/09<br /> |style=&quot;padding:.4em;&quot;|2015-37<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/246.long Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-36<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014974 A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/02<br /> |style=&quot;padding:.4em;&quot;|2015-35<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v14/n6/full/nrg3454.html Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-34<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6225/1010.long Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/26<br /> |style=&quot;padding:.4em;&quot;|2015-33<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/257.long Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/41.long Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/19<br /> |style=&quot;padding:.4em;&quot;|2015-31<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3154.html Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-30<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v16/n3/full/nrg3833.html Computational and analytical challenges in single-cell transcriptomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/12<br /> |style=&quot;padding:.4em;&quot;|2015-29<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867415000136 Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-28<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v500/n7464/full/nature12506.html Richness of human gut microbiome correlates with metabolic markers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-27<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v490/n7418/full/nature11450.html A metagenome-wide association study of gut microbiota in type 2 diabetes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/09<br /> |style=&quot;padding:.4em;&quot;|2015-26<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326 Practical guidelines for the comprehensive analysis of ChIP-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-25<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/5/777.long Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-24<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/11/760.long Rapid neurogenesis through transcriptional activation in human stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/02<br /> |style=&quot;padding:.4em;&quot;|2015-23<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414011787 Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-22<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004237 Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v45/n6/full/ng.2653.html The Genotype-Tissue Expression (GTEx) project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/24<br /> |style=&quot;padding:.4em;&quot;|2015-20<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/346/6212/1007.long Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-19<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13985.html Principles of regulatory information conservation between mouse and human.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-18<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13972.html Conservation of trans-acting circuitry during mammalian regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/16<br /> |style=&quot;padding:.4em;&quot;|2015-17<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13835.html Genetic and epigenetic fine mapping of causal autoimmune disease variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-16<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n3/full/ng.2892.html A general framework for estimating the relative pathogenicity of human genetic variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-15<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003825 A probabilistic model to predict clinical phenotypic traits from genome sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2015/02/02<br /> |style=&quot;padding:.4em;&quot;|2015-14<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/22/E2329.long Relating the metatranscriptome and metagenome of the human gut.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-13<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v513/n7516/full/nature13568.html Alterations of the human gut microbiome in liver cirrhosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-12<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2942.html An integrated catalog of reference genes in the human gut microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-11<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2939.html Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=5|2015/01/26<br /> |style=&quot;padding:.4em;&quot;|2015-10<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/9/1/666.long Computational meta'omics for microbial community studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-09<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/5/7/65 Functional profiling of the gut microbiome in disease-associated inflammation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-08<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S016895251200145X Biodiversity and functional genomics in the human microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-07<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002808 Chapter 12: Human Microbiome Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-06<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.cell.com/cell/abstract/S0092-8674%2814%2900864-2 Conducting a Microbiome Study.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/01/12<br /> |style=&quot;padding:.4em;&quot;|2015-05<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/141210/ncomms6522/full/ncomms6522.html Small RNA changes en route to distinct cellular states of induced pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-04<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14046.html Genome-wide characterization of the routes to pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-03<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14047.html Divergent reprogramming routes lead to alternative stem-cell states.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/01/05<br /> |style=&quot;padding:.4em;&quot;|2015-02<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/21/E2191.long Global view of enhancer-promoter interactome in human cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-01<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://nar.oxfordjournals.org/content/41/22/10391.long Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2014<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/23<br /> |style=&quot;padding:.4em;&quot;|2014-41<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413012270 Super-enhancers in the control of cell identity and disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-40<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413003929 Master transcription factors and mediator establish super-enhancers at key cell identity genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2014/12/09<br /> |style=&quot;padding:.4em;&quot;|2014-39<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414013713 Unraveling the biology of a fungal meningitis pathogen using chemical genetics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-38<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014226 A proteome-scale map of the human interactome network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-37<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/9/752.long The role of the interactome in the maintenance of deleterious variability in human populations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-36<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/342/6154/1235587.long Integrative annotation of variants from 1092 humans: application to cancer genomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/02<br /> |style=&quot;padding:.4em;&quot;|2014-35<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/8/1319.long Mapping functional transcription factor networks from gene expression data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-34<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v15/n7/full/nrg3684.html In pursuit of design principles of regulatory sequences.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/25<br /> |style=&quot;padding:.4em;&quot;|2014-33<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/3/6/36 Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-32<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S009286741300891X Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/18<br /> |style=&quot;padding:.4em;&quot;|2014-31<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/6/8/64 The 'dnet' approach promotes emerging research on cancer patient survival.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-30<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414010368 Determination and inference of eukaryotic transcription factor sequence specificity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/11/11<br /> |style=&quot;padding:.4em;&quot;|2014-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/110/16/6412.long Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-28<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009350 Dissecting engineered cell types and enhancing cell fate conversion via CellNet.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-27<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009349 CellNet: network biology applied to stem cell engineering.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/04<br /> |style=&quot;padding:.4em;&quot;|2014-26<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009775 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-25<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n9/full/nmeth.3046.html Phen-Gen: combining phenotype and genotype to analyze rare disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/10/28<br /> |style=&quot;padding:.4em;&quot;|2014-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-23<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n9/full/ng.3051.html Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/30<br /> |style=&quot;padding:.4em;&quot;|2014-22<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2651.html Network-based stratification of tumor mutations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-21<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414001457 Synonymous mutations frequently act as driver mutations in human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/23<br /> |style=&quot;padding:.4em;&quot;|2014-20<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003460 VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-19<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/13/12/R124 DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/16<br /> |style=&quot;padding:.4em;&quot;|2014-18<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/14/5/R52 Integrated analysis of recurrent properties of cancer genes to identify novel drivers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-17<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/4/11/89 Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/02<br /> |style=&quot;padding:.4em;&quot;|2014-16<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23228031 A network module-based method for identifying cancer prognostic signatures.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-15<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24429628 Realizing the promise of cancer predisposition genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/19<br /> |style=&quot;padding:.4em;&quot;|2014-14<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24952901 Assessing the clinical utility of cancer genomic and proteomic data across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-13<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24132290 Mutational landscape and significance across 12 major cancer types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/12<br /> |style=&quot;padding:.4em;&quot;|2014-12<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23945592 Signatures of mutational processes in human cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-11<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24390350 Discovery and saturation analysis of cancer genes across 21 tumour types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/05<br /> |style=&quot;padding:.4em;&quot;|2014-10<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24084849 Comprehensive identification of mutational cancer driver genes across 12 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-9<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24037244 IntOGen-mutations identifies cancer drivers across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/29<br /> |style=&quot;padding:.4em;&quot;|2014-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23900255 Computational approaches to identify functional genetic variants in cancer genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-7<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23770567 Mutational heterogeneity in cancer and the search for new cancer-associated genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-6<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n4/abs/nmeth.2891.html Cancer genomes: discerning drivers from passengers]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/22<br /> |style=&quot;padding:.4em;&quot;|2014-5<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24071849 The Cancer Genome Atlas Pan-Cancer analysis project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-4<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23539594 Cancer genome landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-3<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=21900272 Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/07/15<br /> |style=&quot;padding:.4em;&quot;|2014-2<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670764 A promoter-level mammalian expression atlas.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-1<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670763 An atlas of active enhancers across human cell types and tissues.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2013<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/26<br /> |style=&quot;padding:.4em;&quot;|2013-31<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://nar.oxfordjournals.org/content/40/16/7690.long Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-30<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n4/full/nbt.2519.html Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/04<br /> |style=&quot;padding:.4em;&quot;|2013-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[https://www.cell.com/abstract/S0092-8674(13)00439-X Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-28<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n3/full/nbt.2514.html Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/28<br /> |style=&quot;padding:.4em;&quot;|2013-27<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.pnas.org/content/102/38/13544.long Discovering statistically significant pathways in expression profiling studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-26<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0058977 Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/21<br /> |style=&quot;padding:.4em;&quot;|2013-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v496/n7446/full/nature11981.html Dynamic regulatory network controlling TH17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-24<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/14<br /> |style=&quot;padding:.4em;&quot;|2013-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-22<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|'''2013/05/07'''<br /> |style=&quot;padding:.4em;&quot;|2013-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-20<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/09<br /> |style=&quot;padding:.4em;&quot;|2013-19<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/02<br /> |style=&quot;padding:.4em;&quot;|2013-18<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot; |2013/03/12<br /> |style=&quot;padding:.4em;&quot;|2013-17<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/03/05<br /> |style=&quot;padding:.4em;&quot;|2013-16<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/21<br /> |style=&quot;padding:.4em;&quot;|2013-15<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-14<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-13<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/15<br /> |style=&quot;padding:.4em;&quot;|2013-12<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-11<br /> |style=&quot;padding:.4em;&quot;| JE Shim, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-10<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/08<br /> |style=&quot;padding:.4em;&quot;|2013-09<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-08<br /> |style=&quot;padding:.4em;&quot;|JE Shim, CY Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-07<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/01/25<br /> |style=&quot;padding:.4em;&quot;|2013-06<br /> |style=&quot;padding:.4em;&quot;|HJ Han, '''JH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-05<br /> |style=&quot;padding:.4em;&quot;|'''ER Kim''', HS Shim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-04<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/01/18<br /> |style=&quot;padding:.4em;&quot;|2013-03<br /> |style=&quot;padding:.4em;&quot;|KS Kim, '''TH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-02<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/01/11<br /> |style=&quot;padding:.4em;&quot;|2013-01<br /> |style=&quot;padding:.4em;&quot;| '''JE Shim''', CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]<br /> |}<br /> <br /> 2012<br /> {|border =&quot;1&quot;<br /> |style=&quot;color:black; background-color:#dcdcdc; padding:5px;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper title<br /> |-<br /> |rowspan = &quot;1&quot;|2013/01/11<br /> |align =&quot;center&quot;|2012-81<br /> |[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]<br /> |-<br /> |rowspan = &quot;1&quot;|2012/12/04<br /> |align =&quot;center&quot;|2012-80<br /> |[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/20<br /> | align=&quot;center&quot;|2012-79<br /> |[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]<br /> |-<br /> | align=&quot;center&quot;|2012-78<br /> |[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/06<br /> | align=&quot;center&quot;|2012-77<br /> |[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]<br /> |-<br /> | align=&quot;center&quot;|2012-76<br /> |[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] <br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/19<br /> | align=&quot;center&quot;|2012-75<br /> |[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]<br /> |-<br /> | align=&quot;center&quot;|2012-74 <br /> |[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] <br /> |-<br /> | align=&quot;center&quot;|2012-73<br /> |[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]<br /> |-<br /> | align=&quot;center&quot;|2012-72<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]<br /> |-<br /> | align=&quot;center&quot;|2012-71<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]<br /> |-<br /> | align=&quot;center&quot;|2012-70<br /> |[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]<br /> |-<br /> |rowspan = &quot;8&quot; |2012/07/16<br /> | align=&quot;center&quot;|2012-69<br /> |[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]<br /> |-<br /> | align=&quot;center&quot;|2012-66<br /> |[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;TH Kim)The Sequence Alignment/Map format and SAMtools]<br /> |-<br /> | align=&quot;center&quot;|2012-65<br /> |[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;TH Kim)The Variant Call Format and VCFtools]<br /> |-<br /> | align=&quot;center&quot;|2012-64<br /> |[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]<br /> |-<br /> |align=&quot;center&quot;|2012-63<br /> |[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-62<br /> |[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]<br /> |-<br /> |align=&quot;center&quot;|2012-61<br /> |[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]<br /> |-<br /> |align=&quot;center&quot;|2012-60<br /> |[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/07/13<br /> |align=&quot;center&quot;|2012-59<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]<br /> |-<br /> | align=&quot;center&quot;|2012-58<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;HJ Kim)A framework for human microbiome research]<br /> |-<br /> |align=&quot;center&quot;|2012-57<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]<br /> |-<br /> |rowspan = &quot;4&quot; |2012/07/12<br /> |align=&quot;center&quot;|2012-56<br /> |[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]<br /> |-<br /> |align=&quot;center&quot;|2012-55<br /> |[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]<br /> |-<br /> | align=&quot;center&quot;|2012-54<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-53<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/09<br /> |align=&quot;center&quot;|2012-52<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-51<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]<br /> |-<br /> | align=&quot;center&quot;|2012-50<br /> |[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]<br /> |-<br /> |align=&quot;center&quot;|2012-49<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]<br /> |-<br /> |align=&quot;center&quot;|2012-48<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]<br /> |-<br /> |align=&quot;center&quot;|2012-47<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/06<br /> | align=&quot;center&quot;|2012-46<br /> |[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]<br /> |-<br /> |align=&quot;center&quot;|2012-45<br /> |[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]<br /> |-<br /> |align=&quot;center&quot;|2012-44<br /> |[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]<br /> |-<br /> |align=&quot;center&quot;|2012-43<br /> |[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]<br /> |-<br /> | align=&quot;center&quot;|2012-42<br /> |[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]<br /> |-<br /> |align=&quot;center&quot;|2012-41<br /> |[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;KS Kim)Exome sequencing and the genetic basis of complex traits]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/02<br /> |align=&quot;center&quot;|2012-40<br /> |[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-39<br /> |[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;TH Kim)De novo discovery of mutated driver pathways in cancer]<br /> |-<br /> | align=&quot;center&quot;|2012-38<br /> |[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]<br /> |-<br /> |align=&quot;center&quot;|2012-37<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]<br /> |-<br /> |align=&quot;center&quot;|2012-36<br /> |[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]<br /> |-<br /> |align=&quot;center&quot;|2012-35<br /> |[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;HJ Kim)Detecting Novel Associations in Large Data Sets]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/03/05<br /> | align=&quot;center&quot;|2012-34<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]<br /> |-<br /> |align=&quot;center&quot;|2012-33<br /> |[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;Ju)Differential expression analysis for sequence count data]<br /> |-<br /> |align=&quot;center&quot;|2012-32<br /> |[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]<br /> |-<br /> |rowspan = &quot;7&quot; |2012/02/27&lt;br /&gt;2012/02/28<br /> | align=&quot;center&quot;|2012-31<br /> |[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]<br /> |-<br /> |align=&quot;center&quot;|2012-30<br /> |[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]<br /> |-<br /> |align=&quot;center&quot;|2012-29<br /> |[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]<br /> |-<br /> |align=&quot;center&quot;|2012-28<br /> |[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]<br /> |-<br /> |align=&quot;center&quot;|2012-27<br /> |[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]<br /> |-<br /> |align=&quot;center&quot;|2012-26<br /> |[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]<br /> |-<br /> |align=&quot;center&quot;|2012-25<br /> |[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;Shin)TopHat: discovering splice junctions with RNA-Seq]<br /> |-<br /> |rowspan = &quot;5&quot; |2012/02/06<br /> | align=&quot;center&quot;|2012-24<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]<br /> |-<br /> |align=&quot;center&quot;|2012-23<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]<br /> |-<br /> |align=&quot;center&quot;|2012-22<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]<br /> |-<br /> |align=&quot;center&quot;|2012-21<br /> |[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]<br /> |-<br /> |align=&quot;center&quot;|2012-20<br /> |[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]<br /> |-<br /> |rowspan = &quot;5&quot; |2012/01/30<br /> |align=&quot;center&quot;|2012-19<br /> |[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]<br /> |-<br /> |align=&quot;center&quot;|2012-18<br /> |[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]<br /> |-<br /> |align=&quot;center&quot;|2012-17<br /> |[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]<br /> |-<br /> |align=&quot;center&quot;|2012-16<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]<br /> |-<br /> |align=&quot;center&quot;|2012-15<br /> |[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/01/09<br /> |align=&quot;center&quot;|2012-14<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]<br /> |-<br /> |align=&quot;center&quot;|2012-13<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]<br /> |-<br /> |align=&quot;center&quot;|2012-12<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/01/09&lt;br /&gt;2012/01/16<br /> | align=&quot;center&quot;|2012-11<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]<br /> |-<br /> |align=&quot;center&quot;|2012-10<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]<br /> |-<br /> |align=&quot;center&quot;|2012-09<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]<br /> |-<br /> |align=&quot;center&quot;|2012-08<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]<br /> |-<br /> |align=&quot;center&quot;|2012-07<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]<br /> |-<br /> |align=&quot;center&quot;|2012-06<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/01/09&lt;br /&gt;2012/01/16<br /> |align=&quot;center&quot;|2012-05<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]<br /> |-<br /> |align=&quot;center&quot;|2012-04<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]<br /> |-<br /> |align=&quot;center&quot;|2012-03<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]<br /> |-<br /> |rowspan = &quot;2&quot; |2012/01/09&lt;br /&gt;2012/01/16<br /> |align=&quot;center&quot;|2012-02<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]<br /> |-<br /> |align=&quot;center&quot;|2012-01<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]<br /> |}<br /> 2011<br /> {|border =&quot;1&quot;<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_title<br /> |-<br /> |rowspan = &quot;6&quot; |2011/11/28<br /> |align=&quot;center&quot;|2011-49<br /> |[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]<br /> |-<br /> |align=&quot;center&quot;|2011-48<br /> |[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-47<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]<br /> |-<br /> |align=&quot;center&quot;|2011-46<br /> |[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]<br /> |-<br /> |align=&quot;center&quot;|2011-45<br /> |[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-44<br /> |[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]<br /> |-<br /> |rowspan = &quot;3&quot; |2011/11/14<br /> |align=&quot;center&quot;|2011-43<br /> |[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]<br /> |-<br /> |align=&quot;center&quot;|2011-42<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]<br /> |-<br /> |align=&quot;center&quot;|2011-41<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]<br /> |-<br /> |rowspan = &quot;4&quot; |2011/11/07<br /> |align=&quot;center&quot;|2011-40<br /> |[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]<br /> |-<br /> |align=&quot;center&quot;|2011-39<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]<br /> |-<br /> |align=&quot;center&quot;|2011-38<br /> |[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]<br /> |-<br /> |align=&quot;center&quot;|2011-37<br /> |[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]<br /> |-<br /> |rowspan = &quot;3&quot; |2011/11/07 <br /> |align=&quot;center&quot;|2011-36<br /> |[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]<br /> |-<br /> |align=&quot;center&quot;|2011-35<br /> |[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]<br /> |-<br /> |align=&quot;center&quot;|2011-34<br /> |[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]<br /> |-<br /> |rowspan = &quot;3&quot; |2011/10/05<br /> |align=&quot;center&quot;|2011-33<br /> |[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]<br /> |-<br /> |align=&quot;center&quot;|2011-32<br /> |[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]<br /> |-<br /> |align=&quot;center&quot;|2011-31<br /> |[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]<br /> |-<br /> |rowspan = &quot;4&quot; |2011/10/04<br /> |align=&quot;center&quot;|2011-30<br /> |[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]<br /> |-<br /> |align=&quot;center&quot;|2011-29<br /> |[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html Molecular eco-systems biology: towards an understanding of community function]<br /> |-<br /> |align=&quot;center&quot;|2011-28<br /> |[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]<br /> |-<br /> |align=&quot;center&quot;|2011-27<br /> |[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]<br /> |-<br /> |rowspan = &quot;2&quot; |2011/09/19<br /> |align=&quot;center&quot;|2011-26<br /> |[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]<br /> |-<br /> |align=&quot;center&quot;|2011-25<br /> |[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]<br /> |-<br /> |rowspan = &quot;2&quot; |2011/09/05<br /> |align=&quot;center&quot;|2011-24<br /> |[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]<br /> |-<br /> |align=&quot;center&quot;|2011-23<br /> |[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]<br /> |-<br /> |rowspan = &quot;2&quot; |2011/09/22 <br /> |align=&quot;center&quot;|2011-22<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]<br /> |-<br /> |align=&quot;center&quot;|2011-21<br /> |[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]<br /> |-<br /> |2011/06/20<br /> |align=&quot;center&quot;|2011-20<br /> |[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]<br /> |-<br /> |rowspan = &quot;2&quot; |2011/03/30<br /> |align=&quot;center&quot;|2011-19<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]<br /> |-<br /> |align=&quot;center&quot;|2011-18<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]<br /> |-<br /> |rowspan = &quot;2&quot; |2011/03/16<br /> |align=&quot;center&quot;|2011-17<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']<br /> |-<br /> |align=&quot;center&quot;|2011-16<br /> |[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]<br /> |-<br /> |rowspan = &quot;3&quot; |2011/04/25<br /> |align=&quot;center&quot;|2011-15<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]<br /> |-<br /> |align=&quot;center&quot;|2011-14<br /> |[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]<br /> |-<br /> |align=&quot;center&quot;|2011-13<br /> |[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]<br /> |-<br /> |rowspan = &quot;2&quot; |2011/04/11<br /> |align=&quot;center&quot;|2011-12<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]<br /> |-<br /> |align=&quot;center&quot;|2011-11<br /> |***Changed!***<br /> [http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]<br /> |-<br /> |rowspan = &quot;2&quot;|2011/03/28<br /> |align=&quot;center&quot;|2011-10<br /> |[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]<br /> |-<br /> |align=&quot;center&quot;|2011-09<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]<br /> |-<br /> |rowspan = &quot;2&quot;|2011/03/14<br /> |align=&quot;center&quot;|2011-08<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6WSN-51SFHJD-1&amp;_user=44062&amp;_coverDate=01%2F07%2F2011&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;searchtype=a phenotypic landscape of a bacterial cell]<br /> |-<br /> |align=&quot;center&quot;|2011-07<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]<br /> |-<br /> |rowspan = &quot;2&quot;|2011/02/28<br /> |align=&quot;center&quot;|2011-06<br /> |[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]<br /> |-<br /> |align=&quot;center&quot;|2011-05<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]<br /> |-<br /> |2011/02/21<br /> |align=&quot;center&quot;|2011-04<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]<br /> |-<br /> |2011/02/14<br /> |align=&quot;center&quot;|2011-03<br /> |[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]<br /> |-<br /> |rowspan = &quot;2&quot;|2011/01/31<br /> |align=&quot;center&quot;|2011-02<br /> |[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]<br /> |-<br /> |align=&quot;center&quot;|2011-01<br /> |[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]<br /> |}<br /> 2010<br /> {|border =&quot;1&quot;<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_title<br /> |-<br /> |rowspan = &quot;2&quot;|2010/12/27<br /> |align=&quot;center&quot;|2010-29<br /> |[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]<br /> |-<br /> |align=&quot;center&quot;|2010-28<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]<br /> |-<br /> |rowspan = &quot;2&quot;|2010/11/15<br /> |align=&quot;center&quot;|2010-27<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]<br /> |-<br /> |align=&quot;center&quot;|2010-26<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B8JDC-50J4MRJ-2&amp;_user=44062&amp;_coverDate=10%2F10%2F2010&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]<br /> |-<br /> |rowspan = &quot;2&quot;|2010/11/01<br /> |align=&quot;center&quot;|2010-25<br /> |[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]<br /> |-<br /> |align=&quot;center&quot;|2010-24<br /> |[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]<br /> |-<br /> |2010/10/11<br /> |align=&quot;center&quot;|2010-23<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]<br /> |-<br /> |rowspan = &quot;2&quot;|2010/09/13<br /> |align=&quot;center&quot;|2010-22<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]<br /> |-<br /> |align=&quot;center&quot;|2010-21<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]<br /> |-<br /> |2010/05/26<br /> |align=&quot;center&quot;|2010-20<br /> |[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]<br /> |-<br /> |2010/05/19<br /> |align=&quot;center&quot;|2010-19<br /> |[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]<br /> |-<br /> |2010/04/21<br /> |align=&quot;center&quot;|2010-18<br /> |[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]<br /> |-<br /> |2010/04/14<br /> |align=&quot;center&quot;|2010-17<br /> |[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]<br /> |-<br /> |rowspan = &quot;2&quot; 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|<br /> |rowspan = &quot;3&quot; |March 5 Mon, 2012<br /> |rowspan = &quot;3&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]<br /> |-<br /> |[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;Ju)Differential expression analysis for sequence count data]<br /> |-<br /> |[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]<br /> |-<br /> |rowspan = &quot;7&quot; |***<br /> |rowspan = &quot;7&quot; |February 27 Mon~28 Tue, 2012<br /> |rowspan = &quot;7&quot; | <br /> |[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]<br /> |-<br /> |[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]<br /> |-<br /> |[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]<br /> |-<br /> |[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]<br /> |-<br /> |[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]<br /> |-<br /> |[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]<br /> |-<br /> |[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;Shin)TopHat: discovering splice junctions with RNA-Seq]<br /> |-<br /> |rowspan = &quot;5&quot; |<br /> |rowspan = &quot;5&quot; |February 6 Mon, 2012<br /> |rowspan = &quot;5&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]<br /> |-<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]<br /> |-<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]<br /> |-<br /> |[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]<br /> |-<br /> |rowspan = &quot;5&quot; |<br /> |rowspan = &quot;5&quot; |January 30 Mon, 2012<br /> |rowspan = &quot;5&quot; | <br /> |[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]<br /> |-<br /> |[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]<br /> |-<br /> |[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]<br /> |-<br /> |[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]<br /> |-<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |January 9 Mon, 2012&lt;br&gt;January 16 Mon, 2012<br /> |rowspan = &quot;3&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]<br /> |-<br /> |rowspan = &quot;6&quot; |<br /> |rowspan = &quot;6&quot; |January 9 Mon, 2012&lt;br&gt;January 16 Mon, 2012<br /> |rowspan = &quot;6&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]<br /> |-<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |January 9 Mon, 2012&lt;br&gt;January 16 Mon, 2012<br /> |rowspan = &quot;3&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |January 9 Mon, 2012&lt;br&gt;January 16 Mon, 2012<br /> |rowspan = &quot;2&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]<br /> |-<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]<br /> |-<br /> |rowspan = &quot;6&quot; |<br /> |rowspan = &quot;6&quot; |November 28 Mon, 2011<br /> |rowspan = &quot;6&quot; | TY Oh, &lt;br&gt;<br /> SH Hwang, &lt;br&gt;<br /> JE Shim, &lt;br&gt;<br /> S Beck, &lt;br&gt;<br /> JH Shin<br /> |[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]<br /> |-<br /> |[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]<br /> |-<br /> |[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]<br /> |-<br /> |[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]<br /> |-<br /> |[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]<br /> |-<br /> |rowspan = &quot;3&quot; | <br /> |rowspan = &quot;3&quot; |November 14 Mon, 2011<br /> |rowspan = &quot;3&quot; | HH Kim &amp; AR Cho<br /> |[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]<br /> |-<br /> |rowspan = &quot;4&quot; | <br /> |rowspan = &quot;4&quot; |November 7 Mon, 2011<br /> |rowspan = &quot;4&quot; | YH Ko<br /> |[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]<br /> |-<br /> |[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]<br /> |-<br /> |[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]<br /> |-<br /> |rowspan = &quot;3&quot; | <br /> |rowspan = &quot;3&quot; |November 7 Mon, 2011<br /> |rowspan = &quot;3&quot; | JW Song<br /> |[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]<br /> |-<br /> |[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]<br /> |-<br /> |[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]<br /> |-<br /> |rowspan = &quot;3&quot; | <br /> |rowspan = &quot;3&quot; |October 5 Mon, 2011<br /> |rowspan = &quot;3&quot; | HH Kim<br /> |[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]<br /> |-<br /> |[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]<br /> |-<br /> |[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]<br /> |-<br /> |rowspan = &quot;4&quot; |<br /> |rowspan = &quot;4&quot; |October 4 Mon, 2011<br /> |rowspan = &quot;4&quot; | S Beck<br /> |[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]<br /> |-<br /> |[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html Molecular eco-systems biology: towards an understanding of community function]<br /> |-<br /> |[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]<br /> |-<br /> |[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |September 19 Mon, 2011<br /> |rowspan = &quot;2&quot; | TY Oh<br /> |[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]<br /> |-<br /> |[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]<br /> |-<br /> |rowspan = &quot;2&quot; | <br /> |rowspan = &quot;2&quot; |September 5 Mon, 2011<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]<br /> |-<br /> |SH Hwang<br /> |[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]<br /> |-<br /> |rowspan = &quot;2&quot; | <br /> |rowspan = &quot;2&quot; | August 22 Mon, 2011<br /> |ER Kim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]<br /> |-<br /> |<br /> |June 20 Mon, 2011<br /> |JH Shin<br /> |[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 30 Mon, 2011<br /> |rowspan = &quot;2&quot; | HH Kim<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]<br /> |-<br /> <br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 16 Mon, 2011<br /> |rowspan = &quot;2&quot; | AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]<br /> |-<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |April 25 Mon, 2011<br /> |rowspan = &quot;3&quot; |S Beck<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 11 Mon, 2011<br /> |JE Shim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]<br /> |-<br /> |T Lee<br /> |***Changed!***<br /> [http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 28 Mon, 2011<br /> |rowspan = &quot;2&quot;|TY Oh<br /> |[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 14 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6WSN-51SFHJD-1&amp;_user=44062&amp;_coverDate=01%2F07%2F2011&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;searchtype=a phenotypic landscape of a bacterial cell]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]<br /> |-<br /> <br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|February 28 Mon, 2011<br /> |KS Kim<br /> |[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]<br /> |-<br /> |HJ Han<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]<br /> |-<br /> |<br /> |February 21 Mon, 2011<br /> |MH Lee<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]<br /> |-<br /> |<br /> |February 14 Mon, 2011<br /> |AR Cho<br /> |[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|January 31 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]<br /> |-<br /> |[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot; | December 27 Mon, 2010<br /> |ER Kim<br /> |[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 15 Mon, 2010<br /> |AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]<br /> |-<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B8JDC-50J4MRJ-2&amp;_user=44062&amp;_coverDate=10%2F10%2F2010&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 1 Mon, 2010<br /> |HH Kim<br /> |[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]<br /> |-<br /> |JH Shin<br /> |[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]<br /> |-<br /> |<br /> |October 11 Mon, 2010<br /> |JE Shim<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]<br /> |-<br /> |<br /> |September 13 Mon, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]<br /> [http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]<br /> |-<br /> |<br /> |May 26 Wed, 2010<br /> |AR Cho<br /> |[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]<br /> |-<br /> |<br /> |May 19 Wed, 2010<br /> |SG Ji<br /> |[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]<br /> |-<br /> |<br /> |April 21 Wed, 2010<br /> |JH Shin<br /> |[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]<br /> |-<br /> |<br /> |April 14 Wed, 2010<br /> |TY Oh<br /> |[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 7 Wed, 2010<br /> |HHkim<br /> |<br /> [http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]<br /> |-<br /> |T Lee<br /> |<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]<br /> |-<br /> |<br /> |Mar 31 Wed, 2010<br /> |JE Shim<br /> |[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]<br /> [http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]<br /> |-<br /> |<br /> |Mar 24 Wed, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]<br /> |-<br /> |<br /> |Jan 18 Mon, 2010<br /> |TY Oh(T Lee)<br /> |JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies<br /> |-<br /> |<br /> |Jan 16 Sat, 2010<br /> |JE Shim(MH Lee)<br /> |systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells<br /> |-<br /> |<br /> |Jan 15 Fri, 2010<br /> |SG Ji<br /> |distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions<br /> |-<br /> |<br /> |Jan 14 Thu, 2010<br /> |HH kim<br /> |chemogenomic_profiling_predicts_antifungal_synergies<br /> |-<br /> |<br /> |Jan 13 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |edgetic_perturbation_models_of_human_inherited_disorders<br /> |-<br /> |<br /> |Jan 12 Tue, 2010<br /> |TY Oh(T Lee)<br /> |analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans<br /> |-<br /> |<br /> |Jan 11 Mon, 2010<br /> |JE Shim(MH Lee)<br /> |predicting_new_molecular_targets_for_known_drugs.pdf<br /> Reference:SEA(Similarity Ensemble Approach)<br /> |-<br /> |<br /> |Jan 09 Sat, 2010<br /> |SG Ji<br /> |harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance<br /> |-<br /> |<br /> |Jan 08 Fri, 2010<br /> |AR Cho<br /> |an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer<br /> |-<br /> |<br /> |Jan 07 Thu, 2010<br /> |HH Kim <br /> |a_phenotypic_profile_of_the_candida_albicans_regulatory_network<br /> |-<br /> |<br /> |Jan 06 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |a_global_view_of_protein_expression_in_human_cells_tissues_and_organs<br /> |}<br /> --&gt;</div>

Junha92 https://netbiolab.org/wiki/index.php?title=Journal_Club&diff=5091 2019-09-16T08:28:40Z

<p>Junha92: </p> <hr /> <div>{|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2019-2nd semester<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; stype=&quot;padding:.4em&quot; | Team<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/15<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-47<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303488 Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-46<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0722-6 Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/08<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-45<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41587-019-0206-z Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-48<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741830446X Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/10/01<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-47<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S1931312819303026 Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-46<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307731 Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/24<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-49<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://genome.cshlp.org/content/early/2019/04/01/gr.243725.118 The accessible chromatin landscape of the murine hippocampus at single-cell resolution]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-44<br /> |style=&quot;padding:.4em;&quot;|SB Baek<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/739011v1 Assessment of computational methods for the analysis of single-cell ATAC-seq data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/17<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-43<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://science.sciencemag.org/content/365/6449/eaau4735 A sparse covarying unit that describes healthy and impaired human gut microbiota development]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-42<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307810 Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/10<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Single-cell<br /> |style=&quot;padding:.4em;&quot;|19-41<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307329?via%3Dihub Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-40<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nbt.4042 Multiplexed droplet single-cell RNA-sequencing using natural genetic variation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/09/03<br /> |style=&quot;padding:.4em;&quot; rowspan=2|Microbiome<br /> |style=&quot;padding:.4em;&quot;|19-39<br /> |style=&quot;padding:.4em;&quot;|NY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S193131281930352X?via%3Dihub The Landscape of Genetic Content in the Gut and Oral Human Microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-38<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419307755?via%3Dihub Benchmarking Metagenomics Tools for Taxonomic Classification]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2019<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/20<br /> |style=&quot;padding:.4em;&quot;|19-37<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/719088v1 Coexpression uncovers a unified single-cell transcriptomic landscape]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-36<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/586859v1 Single-cell interactomes of the human brain reveal cell-type specific convergence of brain disorders]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/08/14<br /> |style=&quot;padding:.4em;&quot;|19-35<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004075 Proportionality: a valid alternative to correlation for relative data]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-34<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41598-017-16520-0 propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-33<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41591-018-0157-9 Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/13<br /> |style=&quot;padding:.4em;&quot;|19-32<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/s41592-018-0254-1 A test metric for assessing single-cell RNA-seq batch correction]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-31<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867419305598 Comprehensive Integration of Single-Cell Data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/08<br /> |style=&quot;padding:.4em;&quot;|19-30<br /> |style=&quot;padding:.4em;&quot;|JH Cha<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418313941 Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831242X High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/08/07<br /> |style=&quot;padding:.4em;&quot;|19-28<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.biorxiv.org/content/10.1101/555557v1 A single-cell reference map for human blood and tissue T cell activation reveals functional states in health and disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-27<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S009286741831568X Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/30<br /> |style=&quot;padding:.4em;&quot;|19-26<br /> |style=&quot;padding:.4em;&quot;|IS Choi<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/nm.4466 High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-25<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.sciencedirect.com/science/article/pii/S0092867418311784 A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/07/23<br /> |style=&quot;padding:.4em;&quot;|19-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26006008 COMPASS identifies T-cell subsets correlated with clinical outcomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-23<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.nature.com/articles/ncomms14825 Sensitive detection of rare disease-associated cell subsets via representation learning]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/30<br /> |style=&quot;padding:.4em;&quot;|19-22<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936547 Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-21<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30936548 Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-20<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30664783 Microbial network disturbances in relapsing refractory Crohn's disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/05/23<br /> |style=&quot;padding:.4em;&quot;|19-19<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30867587 New insights from uncultivated genomes of the global human gut microbiome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30745586 A new genomic blueprint of the human gut microbiota]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-17<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30661755 Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/16<br /> |style=&quot;padding:.4em;&quot;|19-16<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29311644 Dynamics of metatranscription in the inflammatory bowel disease gut microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-15<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29335555 Metatranscriptome of human faecal microbial communities in a cohort of adult men.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/09<br /> |style=&quot;padding:.4em;&quot;|19-14<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30193113 Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-13<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30193112 Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/05/02<br /> |style=&quot;padding:.4em;&quot;|19-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30753825 Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30778252 Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/11<br /> |style=&quot;padding:.4em;&quot;|19-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30479382 Lineage tracking reveals dynamic relationships of T cells in colorectal cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30523328 Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/4/4<br /> |style=&quot;padding:.4em;&quot;|19-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942092 Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29942094 Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/28<br /> |style=&quot;padding:.4em;&quot;|19-6<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28319088 Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-5<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28622514 Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2019/3/21<br /> |style=&quot;padding:.4em;&quot;|19-4<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29988129 Phenotype molding of stromal cells in the lung tumor microenvironment.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787436 A single-cell molecular map of mouse gastrulation and early organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-3<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/30787437 The single-cell transcriptional landscape of mammalian organogenesis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2019/3/14<br /> |style=&quot;padding:.4em;&quot;|19-2<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29961579 Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|19-1<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29198524 Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2018<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/14<br /> |style=&quot;padding:.4em;&quot;|18-12<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+pan-cancer+analysis+of+enhancer+expression+in+nearly+9000+patient+samples A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-11<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Machine+learning+identifies+stemness+features+associated+with+oncogenic+dedifferentiation Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/06/07<br /> |style=&quot;padding:.4em;&quot;|18-10<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Developmental+and+oncogenic+programs+in+H3K27M+gliomas+dissected+by+single-cell+RNA-seq Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-9<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Chemoresistance+evolution+in+triple-negative+breast+cancer+delineated+by+single-cell+sequencing Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/31<br /> |style=&quot;padding:.4em;&quot;|18-8<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Mapping+human+pluripotent+stem+cell+differentiation+pathways+using+high+throughput+single-cell+RNA-sequencing Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-7<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=A+single-cell+RNA-seq+survey+of+the+developmental+landscape+of+the+human+prefrontal+cortex A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/24<br /> |style=&quot;padding:.4em;&quot;|18-6<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Single-cell+RNA+sequencing+identifies+celltype-specific+cis-eQTLs+and+co-expression+QTLs Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-5<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=FOCS%3A+a+novel+method+for+analyzing+enhancer+and+gene+activity+patterns+infers+an+extensive+enhancer-promoter+map FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer-promoter map.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/17<br /> |style=&quot;padding:.4em;&quot;|18-4<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29149608 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-3<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/29610481 A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2018/05/10<br /> |style=&quot;padding:.4em;&quot;|18-2<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=Inferring+regulatory+element+landscapes+and+transcription+factor+networks+from+cancer+methylomes Inferring regulatory element landscapes and transcription factor networks from cancer methylomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|18-1<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28129544 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2017<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/28<br /> |style=&quot;padding:.4em;&quot;|17-36<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/28104840 Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-35<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27240091 Landscape of tumor-infiltrating T cell repertoire of human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/14<br /> |style=&quot;padding:.4em;&quot;|17-34<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2015/09/01/025908 The landscape of T cell infiltration in human cancer and its association with antigen presenting gene expression.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-33<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.08.052 A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/06/07<br /> |style=&quot;padding:.4em;&quot;|17-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.tandfonline.com/doi/full/10.1080/2162402X.2016.1253654 Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-31<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.03.075 Genomic Correlates of Immune-Cell Infiltrates in Colorectal Carcinoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/31<br /> |style=&quot;padding:.4em;&quot;|17-30<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.02.065 Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-29<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.019 Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/24<br /> |style=&quot;padding:.4em;&quot;|17-28<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.12.022 Systemic Immunity Is Required for Effective Cencer Immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-27<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.020 Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/05/17<br /> |style=&quot;padding:.4em;&quot;|17-26<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.018 Host and Environmental Factors Influencing Individual Human Cytokine Responses.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-25<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.10.017 A Functional Genomics Approach to Understand Variation in Cytokine Production in Humans.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/26<br /> |style=&quot;padding:.4em;&quot;|17-24<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2FNMETH.4177 Pooled CRISPR screening with single-cell transcriptome readout.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-23<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.039 Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/12<br /> |style=&quot;padding:.4em;&quot;|17-22<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.cell.2016.11.038 Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-21<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnbt.3569 Wishbone identifies bifurcating developmental trajectories from single-cell data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/04/05<br /> |style=&quot;padding:.4em;&quot;|17-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2017/02/21/110668 Reversed graph embedding resolves complex single-cell developmental trajectories.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-19<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1038%2Fnmeth.4150 Single-cell mRNA quantification and differential analysis with Census.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/29<br /> |style=&quot;padding:.4em;&quot;|17-18<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016%2Fj.celrep.2016.12.060 Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-17<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26051941 Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/22<br /> |style=&quot;padding:.4em;&quot;|17-16<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27580035 Single-cell analysis of mixed-lineage states leading to a binary cell fate choice.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-15<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27281220 Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/03/15<br /> |style=&quot;padding:.4em;&quot;|17-14<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/?term=10.1126%2Fscience.aad0501 Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-13<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/26084335 Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/28<br /> |style=&quot;padding:.4em;&quot;|17-12<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [https://www.ncbi.nlm.nih.gov/pubmed/27824113 A Comprehensive Characterization of the Function of LincRNAs in Transcriptional Regulation Through Long-Range Chromatin Interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-11<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27851969 Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/21<br /> |style=&quot;padding:.4em;&quot;|17-10<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/12/30/097451 Convergence of dispersed regulatory mutations predicts driver genes in prostate cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-09<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//pubmed.gov/27723759 Chromatin structure-based prediction of recurrent noncoding mutations in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/02/07<br /> |style=&quot;padding:.4em;&quot;|17-08<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/17/088286 Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-07<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://biorxiv.org/content/early/2016/11/28/090134 Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/31<br /> |style=&quot;padding:.4em;&quot;|17-06<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27912059 Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/24<br /> |style=&quot;padding:.4em;&quot;|17-05<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27851914 Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2017/01/17<br /> |style=&quot;padding:.4em;&quot;|17-04<br /> |style=&quot;padding:.4em;&quot;|HJ Han <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/25938943 Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|17-03<br /> |style=&quot;padding:.4em;&quot;|EB Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/27306882 CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/10<br /> |style=&quot;padding:.4em;&quot;|17-02<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26527291 ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2017/01/03<br /> |style=&quot;padding:.4em;&quot;|17-01<br /> |style=&quot;padding:.4em;&quot;|SH Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [//www.ncbi.nlm.nih.gov/pubmed/26287467 Single-cell messenger RNA sequencing reveals rare intestinal cell types]<br /> |-<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2016<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; |Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/27<br /> |style=&quot;padding:.4em;&quot;|2016-31<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25664528 Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/12/6<br /> |style=&quot;padding:.4em;&quot;|2016-30<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26299571 Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/29<br /> |style=&quot;padding:.4em;&quot;|2016-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24658644 The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/22<br /> |style=&quot;padding:.4em;&quot;|2016-28<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26887813 Classification of low quality cells from single-cell RNA-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/15<br /> |style=&quot;padding:.4em;&quot;|2016-27<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000487 Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/8<br /> |style=&quot;padding:.4em;&quot;|2016-26<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26000488 Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/11/1<br /> |style=&quot;padding:.4em;&quot;|2016-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27426982 Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/25<br /> |style=&quot;padding:.4em;&quot;|2016-24<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27549193 Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/10/11<br /> |style=&quot;padding:.4em;&quot;|2016-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=sidespread+parainflammation Widespread parainflammation in human cancer]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/27<br /> |style=&quot;padding:.4em;&quot;|2016-22<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27535533 Analysis of protein-coding genetic variation in 60,706 humans]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/20<br /> |style=&quot;padding:.4em;&quot;|2016-21<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> Functional characterization of somatic mutations in cancer using network-based inference of protein activity<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27322546 pubmed]<br /> [http://www.nature.com/ng/journal/v48/n8/full/ng.3593.html fulltext]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/13<br /> |style=&quot;padding:.4em;&quot;|2016-20<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=exploiting+single-cell+expression+to+characterize Exploiting single-cell expression to characterize co-expression replicability.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/9/6<br /> |style=&quot;padding:.4em;&quot;|2016-19<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26940869 Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/31<br /> |style=&quot;padding:.4em;&quot;|2016-18<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27264179 A Computational Drug Repositioning Approach for Targeting Oncogenic Transcription Factors]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/16<br /> |style=&quot;padding:.4em;&quot;|2016-17<br /> |style=&quot;padding:.4em;&quot;|JW Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27309802 The landscape of accessible chromatin in mammalian preimplantation embryos]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/8<br /> |style=&quot;padding:.4em;&quot;|2016-16<br /> |style=&quot;padding:.4em;&quot;|EB Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27064255 Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/8/1<br /> |style=&quot;padding:.4em;&quot;|2016-15<br /> |style=&quot;padding:.4em;&quot;|MY Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27040498 Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/25<br /> |style=&quot;padding:.4em;&quot;|2016-14<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=integration+of+summary+data+from+gwas+and+eqtl+studies Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2016/7/18<br /> |style=&quot;padding:.4em;&quot;|2016-13<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23624555 Identification of transcriptional regulators in the mouse immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/8<br /> |style=&quot;padding:.4em;&quot;|2016-12<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26619012 Mapping the effects of drugs on the immune system]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-11<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26186195 Elucidating compound mechanism of action by network perturbation analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/6/1<br /> |style=&quot;padding:.4em;&quot;|2016-10<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26854917 Integrative approaches for large-scale transcriptome-wide association studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-9<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26950747 Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/18<br /> |style=&quot;padding:.4em;&quot;|2016-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/27013732 Survey of variation in human transcription factors reveals prevalent DNA binding changes]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-7<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26502339 Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/11<br /> |style=&quot;padding:.4em;&quot;|2016-6<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25171417 Predicting Cancer-specific vulnerability via data-driven detection of synthetic lethality]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-5<br /> |style=&quot;padding:.4em;&quot;|DS Bae, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23467089 Dynamic regulatory network controlling Th17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/5/4<br /> |style=&quot;padding:.4em;&quot;|2016-4<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25853550 Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-3<br /> |style=&quot;padding:.4em;&quot;|MY Lee,SM Cho <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26618344 Regulators of genetic risk of breast cancer identified by integrative network analysis]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2016/4/27<br /> |style=&quot;padding:.4em;&quot;|2016-2<br /> |style=&quot;padding:.4em;&quot;|CY Kim,SJ Kwon<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/26780608 A predictive computational framework for direct reprogramming between human cell types]<br /> |-<br /> |style=&quot;padding:.4em;&quot;| 2016-1<br /> |style=&quot;padding:.4em;&quot;| CY Kim,SJ Kwon <br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/25126793 CellNet: Network biology applied to stem cell engineering]<br /> |}<br /> <br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2015<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/11<br /> |style=&quot;padding:.4em;&quot;|2015-55<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/24/2/340.long Improved exome prioritization of disease genes through cross-species phenotype comparison.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-54<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0002929714001128 Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/06/04<br /> |style=&quot;padding:.4em;&quot;|2015-53<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2656.html eXtasy: variant prioritization by genomic data fusion.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-52<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/21/9/1529.long A probabilistic disease-gene finder for personal genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/28<br /> |style=&quot;padding:.4em;&quot;|2015-51<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n12/full/ng.3141.html Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-50<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v28/n5/full/nbt.1630.html GREAT improves functional interpretation of cis-regulatory regions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/21<br /> |style=&quot;padding:.4em;&quot;|2015-49<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2832.html Functional annotation of noncoding sequence variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-48<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/15/10/480 FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/05/14<br /> |style=&quot;padding:.4em;&quot;|2015-47<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v12/n2/full/nmeth.3215.html Selecting causal genes from genome-wide association studies via functionally coherent subnetworks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-46<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2015/150119/ncomms6890/full/ncomms6890.html Biological interpretation of genome-wide association studies using predicted gene functions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/05/07<br /> |style=&quot;padding:.4em;&quot;|2015-45<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/140626/ncomms5212/full/ncomms5212.html Human symptoms-disease network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-44<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413010246 A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-43<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6224/1257601.long Uncovering disease-disease relationships through the incomplete interactome.]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/30<br /> |style=&quot;padding:.4em;&quot;|2015-42<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/142.long The discovery of integrated gene networks for autism and related disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-41<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/12/774.long Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/04/23<br /> |style=&quot;padding:.4em;&quot;|2015-40<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature13990.html Dissecting neural differentiation regulatory networks through epigenetic footprinting.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-39<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14221.html Cell-of-origin chromatin organization shapes the mutational landscape of cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-38<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v518/n7539/full/nature14248.html Integrative analysis of 111 reference human epigenomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/09<br /> |style=&quot;padding:.4em;&quot;|2015-37<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/246.long Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-36<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014974 A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/04/02<br /> |style=&quot;padding:.4em;&quot;|2015-35<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v14/n6/full/nrg3454.html Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-34<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/347/6225/1010.long Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/26<br /> |style=&quot;padding:.4em;&quot;|2015-33<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/2/257.long Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-32<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/25/1/41.long Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/03/19<br /> |style=&quot;padding:.4em;&quot;|2015-31<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3154.html Decoding the regulatory network of early blood development from single-cell gene expression measurements.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-30<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v16/n3/full/nrg3833.html Computational and analytical challenges in single-cell transcriptomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/12<br /> |style=&quot;padding:.4em;&quot;|2015-29<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867415000136 Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-28<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v500/n7464/full/nature12506.html Richness of human gut microbiome correlates with metabolic markers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-27<br /> |style=&quot;padding:.4em;&quot;|<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v490/n7418/full/nature11450.html A metagenome-wide association study of gut microbiota in type 2 diabetes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/09<br /> |style=&quot;padding:.4em;&quot;|2015-26<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326 Practical guidelines for the comprehensive analysis of ChIP-seq data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-25<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/5/777.long Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-24<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/11/760.long Rapid neurogenesis through transcriptional activation in human stem cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/03/02<br /> |style=&quot;padding:.4em;&quot;|2015-23<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414011787 Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-22<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004237 Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v45/n6/full/ng.2653.html The Genotype-Tissue Expression (GTEx) project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/24<br /> |style=&quot;padding:.4em;&quot;|2015-20<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/346/6212/1007.long Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-19<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13985.html Principles of regulatory information conservation between mouse and human.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-18<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v515/n7527/full/nature13972.html Conservation of trans-acting circuitry during mammalian regulatory evolution.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/02/16<br /> |style=&quot;padding:.4em;&quot;|2015-17<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13835.html Genetic and epigenetic fine mapping of causal autoimmune disease variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-16<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n3/full/ng.2892.html A general framework for estimating the relative pathogenicity of human genetic variants.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-15<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003825 A probabilistic model to predict clinical phenotypic traits from genome sequencing.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2015/02/02<br /> |style=&quot;padding:.4em;&quot;|2015-14<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/22/E2329.long Relating the metatranscriptome and metagenome of the human gut.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-13<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v513/n7516/full/nature13568.html Alterations of the human gut microbiome in liver cirrhosis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-12<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2942.html An integrated catalog of reference genes in the human gut microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-11<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/v32/n8/full/nbt.2939.html Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=5|2015/01/26<br /> |style=&quot;padding:.4em;&quot;|2015-10<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/9/1/666.long Computational meta'omics for microbial community studies.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-09<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/5/7/65 Functional profiling of the gut microbiome in disease-associated inflammation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-08<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S016895251200145X Biodiversity and functional genomics in the human microbiome.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-07<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002808 Chapter 12: Human Microbiome Analysis.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-06<br /> |style=&quot;padding:.4em;&quot;|BH Kang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.cell.com/cell/abstract/S0092-8674%2814%2900864-2 Conducting a Microbiome Study.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2015/01/12<br /> |style=&quot;padding:.4em;&quot;|2015-05<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ncomms/2014/141210/ncomms6522/full/ncomms6522.html Small RNA changes en route to distinct cellular states of induced pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-04<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14046.html Genome-wide characterization of the routes to pluripotency.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-03<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nature/journal/v516/n7530/full/nature14047.html Divergent reprogramming routes lead to alternative stem-cell states.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2015/01/05<br /> |style=&quot;padding:.4em;&quot;|2015-02<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/111/21/E2191.long Global view of enhancer-promoter interactome in human cells.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2015-01<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://nar.oxfordjournals.org/content/41/22/10391.long Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2014<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/23<br /> |style=&quot;padding:.4em;&quot;|2014-41<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413012270 Super-enhancers in the control of cell identity and disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-40<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867413003929 Master transcription factors and mediator establish super-enhancers at key cell identity genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=4|2014/12/09<br /> |style=&quot;padding:.4em;&quot;|2014-39<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414013713 Unraveling the biology of a fungal meningitis pathogen using chemical genetics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-38<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414014226 A proteome-scale map of the human interactome network.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-37<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://msb.embopress.org/content/10/9/752.long The role of the interactome in the maintenance of deleterious variability in human populations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-36<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencemag.org/content/342/6154/1235587.long Integrative annotation of variants from 1092 humans: application to cancer genomics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/12/02<br /> |style=&quot;padding:.4em;&quot;|2014-35<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genome.cshlp.org/content/23/8/1319.long Mapping functional transcription factor networks from gene expression data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-34<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nrg/journal/v15/n7/full/nrg3684.html In pursuit of design principles of regulatory sequences.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/25<br /> |style=&quot;padding:.4em;&quot;|2014-33<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/3/6/36 Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-32<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S009286741300891X Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/18<br /> |style=&quot;padding:.4em;&quot;|2014-31<br /> |style=&quot;padding:.4em;&quot;|SM Yang<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/6/8/64 The 'dnet' approach promotes emerging research on cancer patient survival.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-30<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414010368 Determination and inference of eukaryotic transcription factor sequence specificity.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/11/11<br /> |style=&quot;padding:.4em;&quot;|2014-29<br /> |style=&quot;padding:.4em;&quot;|DS Bae<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.pnas.org/content/110/16/6412.long Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-28<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009350 Dissecting engineered cell types and enhancing cell fate conversion via CellNet.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-27<br /> |style=&quot;padding:.4em;&quot;|HH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009349 CellNet: network biology applied to stem cell engineering.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/11/04<br /> |style=&quot;padding:.4em;&quot;|2014-26<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414009775 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-25<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n9/full/nmeth.3046.html Phen-Gen: combining phenotype and genotype to analyze rare disorders.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/10/28<br /> |style=&quot;padding:.4em;&quot;|2014-24<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-23<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/ng/journal/v46/n9/full/ng.3051.html Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/30<br /> |style=&quot;padding:.4em;&quot;|2014-22<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2651.html Network-based stratification of tumor mutations.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-21<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.sciencedirect.com/science/article/pii/S0092867414001457 Synonymous mutations frequently act as driver mutations in human cancers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/23<br /> |style=&quot;padding:.4em;&quot;|2014-20<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003460 VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-19<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/13/12/R124 DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/16<br /> |style=&quot;padding:.4em;&quot;|2014-18<br /> |style=&quot;padding:.4em;&quot;|JH Shin<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomebiology.com/content/14/5/R52 Integrated analysis of recurrent properties of cancer genes to identify novel drivers.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-17<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://genomemedicine.com/content/4/11/89 Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/09/02<br /> |style=&quot;padding:.4em;&quot;|2014-16<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23228031 A network module-based method for identifying cancer prognostic signatures.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-15<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24429628 Realizing the promise of cancer predisposition genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/19<br /> |style=&quot;padding:.4em;&quot;|2014-14<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24952901 Assessing the clinical utility of cancer genomic and proteomic data across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-13<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24132290 Mutational landscape and significance across 12 major cancer types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/12<br /> |style=&quot;padding:.4em;&quot;|2014-12<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23945592 Signatures of mutational processes in human cancer.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-11<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24390350 Discovery and saturation analysis of cancer genes across 21 tumour types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/08/05<br /> |style=&quot;padding:.4em;&quot;|2014-10<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24084849 Comprehensive identification of mutational cancer driver genes across 12 tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-9<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24037244 IntOGen-mutations identifies cancer drivers across tumor types.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/29<br /> |style=&quot;padding:.4em;&quot;|2014-8<br /> |style=&quot;padding:.4em;&quot;|CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23900255 Computational approaches to identify functional genetic variants in cancer genomes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-7<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=23770567 Mutational heterogeneity in cancer and the search for new cancer-associated genes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-6<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.nature.com/nmeth/journal/v11/n4/abs/nmeth.2891.html Cancer genomes: discerning drivers from passengers]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2014/07/22<br /> |style=&quot;padding:.4em;&quot;|2014-5<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/24071849 The Cancer Genome Atlas Pan-Cancer analysis project.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-4<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/23539594 Cancer genome landscapes.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-3<br /> |style=&quot;padding:.4em;&quot;|AR Cho<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=21900272 Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2014/07/15<br /> |style=&quot;padding:.4em;&quot;|2014-2<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670764 A promoter-level mammalian expression atlas.]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2014-1<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|<br /> [http://www.ncbi.nlm.nih.gov/pubmed/?term=24670763 An atlas of active enhancers across human cell types and tissues.]<br /> |}<br /> {|class=wikitable style=&quot;text-align:center;&quot;<br /> |+style=&quot;text-align:left;font-size:12pt&quot; | 2013<br /> |-<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Date<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper&lt;br/&gt;index<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Presenter<br /> !scope=&quot;col&quot; style=&quot;padding:.4em&quot; | Paper title<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/26<br /> |style=&quot;padding:.4em;&quot;|2013-31<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://nar.oxfordjournals.org/content/40/16/7690.long Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-30<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n4/full/nbt.2519.html Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/06/04<br /> |style=&quot;padding:.4em;&quot;|2013-29<br /> |style=&quot;padding:.4em;&quot;|KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[https://www.cell.com/abstract/S0092-8674(13)00439-X Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-28<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v31/n3/full/nbt.2514.html Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/28<br /> |style=&quot;padding:.4em;&quot;|2013-27<br /> |style=&quot;padding:.4em;&quot;|YH Ko<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.pnas.org/content/102/38/13544.long Discovering statistically significant pathways in expression profiling studies]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-26<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0058977 Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/21<br /> |style=&quot;padding:.4em;&quot;|2013-25<br /> |style=&quot;padding:.4em;&quot;|HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v496/n7446/full/nature11981.html Dynamic regulatory network controlling TH17 cell differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-24<br /> |style=&quot;padding:.4em;&quot;|T Lee<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/05/14<br /> |style=&quot;padding:.4em;&quot;|2013-23<br /> |style=&quot;padding:.4em;&quot;|JE Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-22<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|'''2013/05/07'''<br /> |style=&quot;padding:.4em;&quot;|2013-21<br /> |style=&quot;padding:.4em;&quot;|ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-20<br /> |style=&quot;padding:.4em;&quot;|HS Shim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/09<br /> |style=&quot;padding:.4em;&quot;|2013-19<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013/04/02<br /> |style=&quot;padding:.4em;&quot;|2013-18<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]<br /> |-<br /> |style=&quot;padding:.4em;&quot; |2013/03/12<br /> |style=&quot;padding:.4em;&quot;|2013-17<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/03/05<br /> |style=&quot;padding:.4em;&quot;|2013-16<br /> |style=&quot;padding:.4em;&quot;| ER Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/21<br /> |style=&quot;padding:.4em;&quot;|2013-15<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-14<br /> |style=&quot;padding:.4em;&quot;| KS Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-13<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/15<br /> |style=&quot;padding:.4em;&quot;|2013-12<br /> |style=&quot;padding:.4em;&quot;| HJ Han<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-11<br /> |style=&quot;padding:.4em;&quot;| JE Shim, CY Kim <br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-10<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/02/08<br /> |style=&quot;padding:.4em;&quot;|2013-09<br /> |style=&quot;padding:.4em;&quot;|HJ Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-08<br /> |style=&quot;padding:.4em;&quot;|JE Shim, CY Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-07<br /> |style=&quot;padding:.4em;&quot;|HJ Han, JH Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=3|2013/01/25<br /> |style=&quot;padding:.4em;&quot;|2013-06<br /> |style=&quot;padding:.4em;&quot;|HJ Han, '''JH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-05<br /> |style=&quot;padding:.4em;&quot;|'''ER Kim''', HS Shim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-04<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]<br /> <br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=2|2013/01/18<br /> |style=&quot;padding:.4em;&quot;|2013-03<br /> |style=&quot;padding:.4em;&quot;|KS Kim, '''TH Kim'''<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]<br /> |-<br /> |style=&quot;padding:.4em;&quot;|2013-02<br /> |style=&quot;padding:.4em;&quot;|'''HJ Han''', JH Kim<br /> |style=&quot;padding:.4em;text-align:left;&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]<br /> |-<br /> |style=&quot;padding:.4em;&quot; rowspan=1|2013/01/11<br /> |style=&quot;padding:.4em;&quot;|2013-01<br /> |style=&quot;padding:.4em;&quot;| '''JE Shim''', CY Kim<br /> |style=&quot;padding:.4em;text-align:left&quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]<br /> |}<br /> <br /> 2012<br /> {|border =&quot;1&quot;<br /> |style=&quot;color:black; background-color:#dcdcdc; padding:5px;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper title<br /> |-<br /> |rowspan = &quot;1&quot;|2013/01/11<br /> |align =&quot;center&quot;|2012-81<br /> |[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]<br /> |-<br /> |rowspan = &quot;1&quot;|2012/12/04<br /> |align =&quot;center&quot;|2012-80<br /> |[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/20<br /> | align=&quot;center&quot;|2012-79<br /> |[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]<br /> |-<br /> | align=&quot;center&quot;|2012-78<br /> |[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]<br /> |-<br /> |rowspan = &quot;2&quot;|2012/11/06<br /> | align=&quot;center&quot;|2012-77<br /> |[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]<br /> |-<br /> | align=&quot;center&quot;|2012-76<br /> |[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] <br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/19<br /> | align=&quot;center&quot;|2012-75<br /> |[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]<br /> |-<br /> | align=&quot;center&quot;|2012-74 <br /> |[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] <br /> |-<br /> | align=&quot;center&quot;|2012-73<br /> |[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]<br /> |-<br /> | align=&quot;center&quot;|2012-72<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]<br /> |-<br /> | align=&quot;center&quot;|2012-71<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]<br /> |-<br /> | align=&quot;center&quot;|2012-70<br /> |[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]<br /> |-<br /> |rowspan = &quot;8&quot; |2012/07/16<br /> | align=&quot;center&quot;|2012-69<br /> |[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]<br /> |-<br /> | align=&quot;center&quot;|2012-66<br /> |[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;TH Kim)The Sequence Alignment/Map format and SAMtools]<br /> |-<br /> | align=&quot;center&quot;|2012-65<br /> |[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;TH Kim)The Variant Call Format and VCFtools]<br /> |-<br /> | align=&quot;center&quot;|2012-64<br /> |[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]<br /> |-<br /> |align=&quot;center&quot;|2012-63<br /> |[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-62<br /> |[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]<br /> |-<br /> |align=&quot;center&quot;|2012-61<br /> |[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]<br /> |-<br /> |align=&quot;center&quot;|2012-60<br /> |[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/07/13<br /> |align=&quot;center&quot;|2012-59<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]<br /> |-<br /> | align=&quot;center&quot;|2012-58<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;HJ Kim)A framework for human microbiome research]<br /> |-<br /> |align=&quot;center&quot;|2012-57<br /> |[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]<br /> |-<br /> |rowspan = &quot;4&quot; |2012/07/12<br /> |align=&quot;center&quot;|2012-56<br /> |[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]<br /> |-<br /> |align=&quot;center&quot;|2012-55<br /> |[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]<br /> |-<br /> | align=&quot;center&quot;|2012-54<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-53<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/09<br /> |align=&quot;center&quot;|2012-52<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]<br /> |-<br /> |align=&quot;center&quot;|2012-51<br /> |[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]<br /> |-<br /> | align=&quot;center&quot;|2012-50<br /> |[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]<br /> |-<br /> |align=&quot;center&quot;|2012-49<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]<br /> |-<br /> |align=&quot;center&quot;|2012-48<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]<br /> |-<br /> |align=&quot;center&quot;|2012-47<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/06<br /> | align=&quot;center&quot;|2012-46<br /> |[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]<br /> |-<br /> |align=&quot;center&quot;|2012-45<br /> |[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]<br /> |-<br /> |align=&quot;center&quot;|2012-44<br /> |[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]<br /> |-<br /> |align=&quot;center&quot;|2012-43<br /> |[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]<br /> |-<br /> | align=&quot;center&quot;|2012-42<br /> |[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]<br /> |-<br /> |align=&quot;center&quot;|2012-41<br /> |[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;KS Kim)Exome sequencing and the genetic basis of complex traits]<br /> |-<br /> |rowspan = &quot;6&quot; |2012/07/02<br /> |align=&quot;center&quot;|2012-40<br /> |[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]<br /> |-<br /> |align=&quot;center&quot;|2012-39<br /> |[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;TH Kim)De novo discovery of mutated driver pathways in cancer]<br /> |-<br /> | align=&quot;center&quot;|2012-38<br /> |[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]<br /> |-<br /> |align=&quot;center&quot;|2012-37<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]<br /> |-<br /> |align=&quot;center&quot;|2012-36<br /> |[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]<br /> |-<br /> |align=&quot;center&quot;|2012-35<br /> |[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;HJ Kim)Detecting Novel Associations in Large Data Sets]<br /> |-<br /> |rowspan = &quot;3&quot; |2012/03/05<br /> | align=&quot;center&quot;|2012-34<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]<br /> |-<br /> |align=&quot;center&quot;|2012-33<br /> |[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;Ju)Differential expression analysis for sequence count data]<br /> |-<br /> |align=&quot;center&quot;|2012-32<br /> |[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]<br /> |-<br /> |rowspan = &quot;7&quot; |2012/02/27&lt;br /&gt;2012/02/28<br /> | align=&quot;center&quot;|2012-31<br /> |[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]<br /> |-<br /> |align=&quot;center&quot;|2012-30<br /> |[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]<br /> |-<br /> |align=&quot;center&quot;|2012-29<br /> |[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]<br /> |-<br /> |align=&quot;center&quot;|2012-28<br /> |[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]<br /> |-<br /> |align=&quot;center&quot;|2012-27<br /> |[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]<br /> |-<br /> |align=&quot;center&quot;|2012-26<br /> |[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]<br /> |-<br /> |align=&quot;center&quot;|2012-25<br /> |[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;Shin)TopHat: discovering splice junctions with RNA-Seq]<br /> |-<br /> |rowspan = &quot;5&quot; 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background-color:#dcdcdc;&quot; align=&quot;center&quot; |Date<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_index<br /> |style=&quot;color:black; background-color:#dcdcdc;&quot; align=&quot;center&quot;|Paper_title<br /> |-<br /> |rowspan = &quot;6&quot; |2011/11/28<br /> |align=&quot;center&quot;|2011-49<br /> |[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]<br /> |-<br /> |align=&quot;center&quot;|2011-48<br /> |[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-47<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]<br /> |-<br /> |align=&quot;center&quot;|2011-46<br /> |[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]<br /> |-<br /> |align=&quot;center&quot;|2011-45<br /> |[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]<br /> |-<br /> |align=&quot;center&quot;|2011-44<br /> |[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]<br /> |-<br /> |rowspan = &quot;3&quot; 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|2010/04/07<br /> |align=&quot;center&quot;|2010-16<br /> |[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]<br /> |-<br /> |align=&quot;center&quot;|2010-15<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]<br /> |-<br /> |rowspan=&quot;2&quot;|2010/03/31<br /> |align=&quot;center&quot;|2010-14<br /> |[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]<br /> |-<br /> |align=&quot;center&quot;|2010-13<br /> |[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]<br /> |-<br /> |2010/03/24<br /> |align=&quot;center&quot;|2010-12<br /> |[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]<br /> |-<br /> |2010/01/18<br /> |align=&quot;center&quot;|2010-11<br /> |JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies<br /> |-<br /> |2010/01/16<br /> |align=&quot;center&quot;|2010-10<br /> |systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells<br /> |-<br /> |2010/01/15<br /> |align=&quot;center&quot;|2010-09<br /> |distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions<br /> |-<br /> |2010/01/14<br /> |align=&quot;center&quot;|2010-08<br /> |chemogenomic_profiling_predicts_antifungal_synergies<br /> |-<br /> |2010/01/13<br /> |align=&quot;center&quot;|2010-07<br /> |edgetic_perturbation_models_of_human_inherited_disorders<br /> |-<br /> |2010/01/12<br /> |align=&quot;center&quot;|2010-06<br /> |analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans<br /> |-<br /> |2010/01/11<br /> |align=&quot;center&quot;|2010-05<br /> |predicting_new_molecular_targets_for_known_drugs.pdf<br /> Reference:SEA(Similarity Ensemble Approach)<br /> |-<br /> |2010/01/09<br /> |align=&quot;center&quot;|2010-04<br /> |harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance<br /> |-<br /> |2010/01/08<br /> |align=&quot;center&quot;|2010-03<br /> |an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer<br /> |-<br /> |2010/01/07<br /> |align=&quot;center&quot;|2010-02<br /> |a_phenotypic_profile_of_the_candida_albicans_regulatory_network<br /> |-<br /> |2010/01/06<br /> |align=&quot;center&quot;|2010-01<br /> |a_global_view_of_protein_expression_in_human_cells_tissues_and_organs<br /> |}<br /> <br /> <br /> <br /> <br /> &lt;!--<br /> {| border =&quot;1&quot;<br /> {| border =&quot;1&quot;<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |March 5 Mon, 2012<br /> |rowspan = &quot;3&quot; | <br /> |[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]<br /> |-<br /> |[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;Ju)Differential expression analysis for sequence count data]<br /> |-<br /> |[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]<br /> |-<br /> |rowspan = &quot;7&quot; |***<br /> |rowspan = &quot;7&quot; |February 27 Mon~28 Tue, 2012<br /> |rowspan = &quot;7&quot; | <br /> |[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]<br /> |-<br /> |[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]<br /> |-<br /> |[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]<br /> |-<br /> |[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]<br /> |-<br /> |[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]<br /> |-<br /> |[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]<br /> |-<br /> |[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;Shin)TopHat: discovering splice junctions with RNA-Seq]<br /> |-<br /> |rowspan = &quot;5&quot; 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| <br /> |rowspan = &quot;2&quot; |September 5 Mon, 2011<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]<br /> |-<br /> |SH Hwang<br /> |[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]<br /> |-<br /> |rowspan = &quot;2&quot; | <br /> |rowspan = &quot;2&quot; | August 22 Mon, 2011<br /> |ER Kim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]<br /> |-<br /> |<br /> |June 20 Mon, 2011<br /> |JH Shin<br /> |[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 30 Mon, 2011<br /> |rowspan = &quot;2&quot; | HH Kim<br /> |[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]<br /> |-<br /> |[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]<br /> |-<br /> <br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; | May 16 Mon, 2011<br /> |rowspan = &quot;2&quot; | AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]<br /> |-<br /> |rowspan = &quot;3&quot; |<br /> |rowspan = &quot;3&quot; |April 25 Mon, 2011<br /> |rowspan = &quot;3&quot; |S Beck<br /> |[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]<br /> |-<br /> |[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 11 Mon, 2011<br /> |JE Shim<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]<br /> |-<br /> |T Lee<br /> |***Changed!***<br /> [http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 28 Mon, 2011<br /> |rowspan = &quot;2&quot;|TY Oh<br /> |[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|March 14 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6WSN-51SFHJD-1&amp;_user=44062&amp;_coverDate=01%2F07%2F2011&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;searchtype=a phenotypic landscape of a bacterial cell]<br /> |-<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]<br /> |-<br /> <br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|February 28 Mon, 2011<br /> |KS Kim<br /> |[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]<br /> |-<br /> |HJ Han<br /> |[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]<br /> |-<br /> |<br /> |February 21 Mon, 2011<br /> |MH Lee<br /> |[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]<br /> |-<br /> |<br /> |February 14 Mon, 2011<br /> |AR Cho<br /> |[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|January 31 Mon, 2011<br /> |rowspan = &quot;2&quot;|JW Song<br /> |[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]<br /> |-<br /> |[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot; | December 27 Mon, 2010<br /> |ER Kim<br /> |[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]<br /> |-<br /> |T Lee<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 15 Mon, 2010<br /> |AR Cho<br /> |[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]<br /> |-<br /> |SG Ji<br /> |[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B8JDC-50J4MRJ-2&amp;_user=44062&amp;_coverDate=10%2F10%2F2010&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_origin=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_acct=C000004738&amp;_version=1&amp;_urlVersion=0&amp;_userid=44062&amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]<br /> |-<br /> |rowspan = &quot;2&quot;|<br /> |rowspan = &quot;2&quot;|November 1 Mon, 2010<br /> |HH Kim<br /> |[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]<br /> |-<br /> |JH Shin<br /> |[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]<br /> |-<br /> |<br /> |October 11 Mon, 2010<br /> |JE Shim<br /> |[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]<br /> |-<br /> |<br /> |September 13 Mon, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]<br /> [http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]<br /> |-<br /> |<br /> |May 26 Wed, 2010<br /> |AR Cho<br /> |[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]<br /> |-<br /> |<br /> |May 19 Wed, 2010<br /> |SG Ji<br /> |[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]<br /> |-<br /> |<br /> |April 21 Wed, 2010<br /> |JH Shin<br /> |[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]<br /> |-<br /> |<br /> |April 14 Wed, 2010<br /> |TY Oh<br /> |[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]<br /> |-<br /> |rowspan = &quot;2&quot; |<br /> |rowspan = &quot;2&quot; |April 7 Wed, 2010<br /> |HHkim<br /> |<br /> [http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]<br /> |-<br /> |T Lee<br /> |<br /> [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]<br /> |-<br /> |<br /> |Mar 31 Wed, 2010<br /> |JE Shim<br /> |[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]<br /> [http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]<br /> |-<br /> |<br /> |Mar 24 Wed, 2010<br /> |SH Hwang<br /> |[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]<br /> |-<br /> |<br /> |Jan 18 Mon, 2010<br /> |TY Oh(T Lee)<br /> |JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies<br /> |-<br /> |<br /> |Jan 16 Sat, 2010<br /> |JE Shim(MH Lee)<br /> |systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells<br /> |-<br /> |<br /> |Jan 15 Fri, 2010<br /> |SG Ji<br /> |distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions<br /> |-<br /> |<br /> |Jan 14 Thu, 2010<br /> |HH kim<br /> |chemogenomic_profiling_predicts_antifungal_synergies<br /> |-<br /> |<br /> |Jan 13 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |edgetic_perturbation_models_of_human_inherited_disorders<br /> |-<br /> |<br /> |Jan 12 Tue, 2010<br /> |TY Oh(T Lee)<br /> |analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans<br /> |-<br /> |<br /> |Jan 11 Mon, 2010<br /> |JE Shim(MH Lee)<br /> |predicting_new_molecular_targets_for_known_drugs.pdf<br /> Reference:SEA(Similarity Ensemble Approach)<br /> |-<br /> |<br /> |Jan 09 Sat, 2010<br /> |SG Ji<br /> |harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance<br /> |-<br /> |<br /> |Jan 08 Fri, 2010<br /> |AR Cho<br /> |an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer<br /> |-<br /> |<br /> |Jan 07 Thu, 2010<br /> |HH Kim <br /> |a_phenotypic_profile_of_the_candida_albicans_regulatory_network<br /> |-<br /> |<br /> |Jan 06 Wed, 2010<br /> |JH Shin(ER Kim)<br /> |a_global_view_of_protein_expression_in_human_cells_tissues_and_organs<br /> |}<br /> --&gt;</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People&diff=5072 2019-08-23T03:36:42Z

<p>Junha92: /* Graduate Students */</p> <hr /> <div>__NOTOC__<br /> =='''Principal Investigator'''==<br /> {|border=&quot;0&quot; width=&quot;150&quot;<br /> |align=&quot;center&quot;|[[File:이인석-2011사진.jpg|90px|link=people:IS_Lee]]<br /> |-<br /> |align=&quot;center&quot;|[[people:IS_Lee|&lt;big&gt;'''Insuk Lee'''&lt;/big&gt;]]<br /> |-<br /> |}<br /> <br /> =='''Research Staffs'''==<br /> {|border=&quot;0&quot; width=&quot;400&quot;<br /> |align=&quot;center&quot;|[[File:Smyang.jpg|70px|link=people:SM_Yang]]<br /> |align=&quot;center&quot;|[[File:SYLee.jpg|70px|link=people:SY_Lee]]<br /> |align=&quot;center&quot;|[[File:MYLee.png|70px|link=people:MY_Lee]]<br /> |-<br /> |align=&quot;center&quot;|[[people:SM_Yang|&lt;big&gt;'''Sunmo Yang'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[people:SY_Lee|&lt;big&gt;'''Sangyoung Lee'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[people:MY_Lee|&lt;big&gt;'''Muyoung Lee'''&lt;/big&gt;]]<br /> |-<br /> |align=&quot;center&quot;|[[people:SM_Yang|Bioinformatics&lt;br/&gt;Programmer&lt;br/&gt;&amp; Sys. Admin]]<br /> |align=&quot;center&quot;|[[people:SY_Lee|Senior&lt;br/&gt;Research Assistant]]<br /> |align=&quot;center&quot;|[[people:MY_Lee|Research Staff]]<br /> |}<br /> <br /> =='''Graduate Students'''==<br /> {|border=&quot;0&quot; width=&quot;800&quot;<br /> <br /> |align=&quot;center&quot; |[[File:People_KSKim.jpg|70px|link=people:KS_Kim]]<br /> |align=&quot;center&quot;|[[File:cykim.PNG|70px|link=People:CY_Kim]]<br /> |align=&quot;center&quot;|[[File:Cho_JW.png|70px|link=People:J_Cho]]<br /> |align=&quot;center&quot;|[[File:2019_sungho.png|70px|link=People:S_Lee]]<br /> |align=&quot;center&quot;|[[File:Junha_Cha_profile2.png|70px|link=People:JH_Cha]]<br /> |align=&quot;center&quot;|[[File:나연.png|70px|link=People:NY_Kim]]<br /> |align=&quot;center&quot;|[[File:Who.png|70px|link=People:SB_Baek]]<br /> |-<br /> <br /> |align=&quot;center&quot;|[[people:KS_Kim|&lt;big&gt;'''Kyungsoo Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:CY Kim|&lt;big&gt;'''Chan Yeong Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:J_Cho|&lt;big&gt;'''Jae Won Cho'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:S_Lee|&lt;big&gt;'''Sungho Lee'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|&lt;big&gt;'''Junha Cha'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|&lt;big&gt;'''Nayeon Kim'''&lt;/big&gt;]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|&lt;big&gt;'''Seungbyn Baek'''&lt;/big&gt;]]<br /> |-<br /> <br /> |align=&quot;center&quot;|[[people:KS_Kim|Ph.D candidate&lt;br/&gt;(2013.3 - )]]<br /> |align=&quot;center&quot;|[[people:CY Kim|Ph.D candidate&lt;br/&gt;(2015.3 - )]]<br /> |align=&quot;center&quot;|[[people:J_Cho|Ph.D candidate&lt;br/&gt;(2016.9 - )]]<br /> |align=&quot;center&quot;|[[People:S_Lee|Ph.D course&lt;br/&gt;(2017.3 - )]]<br /> |align=&quot;center&quot;|[[People:JH_Cha|Master's course&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:NY_Kim|Master's course&lt;br/&gt;(2019.9 - )]]<br /> |align=&quot;center&quot;|[[People:SB_Baek|Master's course&lt;br/&gt;(2019.9 - )]]<br /> |}<br /> <br /> =='''Undergraduate Students'''==<br /> *Il Seok Choi<br /> <br /> =='''Alumni'''==<br /> *'''Former Post-docs and Staff Scientists'''<br /> **Taeyun Oh (2009.5-2011.12), currently Deputy Principal Consultant (인실리코젠 생명정보분석컨설턴트), [http://www.insilicogen.com INSILICOGEN], Korea <br /> **Sohyun Hwang (2010.3-2015.8), currently Assistant Professor (차의과대학 의과학과 교수), [http://bt.cha.ac.kr/ Department of Biomedical Science, CHA University], Korea <br /> **Samuel Beck (2011.2-2011.12), currently Assistant Professor of Computational Biology, The Mount Desert Island Biological Laboratory, Maine, USA (미국 MDI 생명과학연구소 교수), [https://mdibl.org/faculty/sam-beck-ph-d/ Lab Homepage]<br /> **Jawon Song (2011.1-2012.5), currently Research Associate (미국 텍사스슈퍼컴퓨팅센터 선임연구원), [https://www.tacc.utexas.edu/about/directory/jawon-song Texas Advanced Computing Center], Austin, TX, USA<br /> **Yoonhee Ko (2012.8-2014.2), currently Assistant Professor (한국외국어대 바이오공학과 교수), [http://bme.hufs.ac.kr/ Department of Biomedical Engineering, Hankuk University of Foreign Studies], Korea <br /> **Jonghoon Lee (2013.10-2014.2), currently Assistant Professor (차의과대학 식품생명공학과 교수), [http://fsb.cha.ac.kr/ Department of Food Science and Biotechnology, CHA University], Korea <br /> **Jung Eun Shim (2009.8-2017.11), currently Researcher at Yonsei Genomics Center Bioinformatics Data Analysis Core (연세의료원 유전체센터 생명정보분석코어 선임연구원)<br /> <br /> *'''Former Graduate Students (PhD)'''<br /> **Junha Shin (2008.9-2014.2), PhD; currently Postdoc Fellow, University of Wisconsin-Madison (미국 위스콘신대 박사후연구원), USA [https://roylab.discovery.wisc.edu/ Roy Lab]<br /> **Hanhae Kim (2008.9-2015.2), PhD; currently Associate Research Fellow (한국과학기술기획평가원 부연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Ara Cho (2008.9-2015.2), PhD; currently Associate Research Fellow (한국과학기술기획평가원 부연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;T Evaluation and Planning (KISTEP)]<br /> **Eiru Kim (2010.9-2016.8), PhD; currently Postdoc Fellow, MD Anderson Cancer Center, Texas, USA (미국 엠디앤더슨암센터 박사후연구원) [http://www.hart-lab.org/ Hart Lab]<br /> **Tak Lee (2011.3-2017.2), PhD; currently Postdoc Fellow, Sainsbury Laboratory at University of Cambridge, UK (영국 케임브리지대학 박사후연구원) [https://www.slcu.cam.ac.uk/research/oldroyd-group Oldroyd Lab] [https://www.slcu.cam.ac.uk/research/ahnert-group Ahnert Lab]<br /> **Heonjong Han (2011.1~2019.8), PhD; currently Postdoc Fellow, National Cancer Center, Korea (국립암센터 박사후연구원) [https://www.ncc.re.kr/ NCC]<br /> <br /> *'''Former Graduate Students (Master)'''<br /> **Sun-Gou Ji (2009.9-2011.8), M.Eng.; PhD from University of Cambridge (Sanger Genome center); currently R&amp;D engineer at [https://www.sbgenomics.com/ Seven Bridges], USA<br /> **Hyojin Kim (2013.3-2015.2), M.Eng.; currently Bioinformatics Scientist, Aachen University, Germany <br /> **Hongseok Shim (2013.9-2015.8), M.Eng.; <br /> **Sunmo Yang (2014.9-2017.2), M.Eng. currently Bioinformatics programmer, Yonsei University<br /> **Muyoung Lee (2016.3-2018.2), M.Eng. currently Research staff, Yonsei University<br /> <br /> *'''Former Visiting Scientists/Students'''<br /> **Minkyung Shin (2012.3-2012.7), went to University of Southern California graduate school<br /> **Paul Chung (2012 summer), currently E-Commerce Analyst/Coordinator at [http://www.riotgames.com/ Riot Games], USA<br /> **Susie Shin (2013 summer)<br /> **Hyunjin Cho (2014 summer), currently Bioinformatics research assistant at [http://www.libd.org/ The Lieber Institute for Brain Development | LIBD], USA<br /> **Michael Chung (2016.8-2016.12), currently work at [https://www.facebook.com/ Facebook], USA<br /> <br /> *'''Former Undergraduate Students'''<br /> **Ila Shin, went to medical school (Yonsei Univ.)<br /> **Yoonkyung Ko<br /> **Sangyo Park, went to law school (Kyounghee Univ.)<br /> **Jayoon Shin, went to medical school (Pusan National Univ.)<br /> **Dongjoo Sun, went to dental school (Wongwang Univ.)<br /> **Eulsoo Kim<br /> **Myungwhan Lee, went to medical school (Yonsei Univ.)<br /> **Moonhee Lee, went to graduate school (University of Amsterdam, Netherlands)<br /> **Jinhyun Ju, went to graduate school (Cornell Medical School, Computational Systems Biology); Currently Bioinformatics Scientist, Illumina, San Diego, USA (현재 미국 Illumina 본사 근무) <br /> **Haeyoung Shin, went to graduate school (Brown University, Computational Neuroscience)<br /> **Joonghee Soh, went to graduate school (KAIST, Culture Technology)<br /> **Hee Jung Cho, went to graduate school (UC Berkeley) <br /> **TaeHwan Kim, went to medical school<br /> **Joohyung Kim, went to medical school (Kyungpook National Univ.)<br /> **Donghyun Shin, went to medical school (Yonsei Univ.)<br /> **Byunghee Kang (2015 spring - 2016 summer), went to graduate school (PosTech)<br /> **Sunphil Kim (2016 winter)<br /> **Jaeho Shim (2016 winter)<br /> **Seunghyun Shin (2016 spring)<br /> **Aejoo Hong (2016 spring)<br /> **Changbae Bang (2016 summer), went to medical school (Yonsei Univ.)<br /> **Seoyoung Choi (2016 summer)<br /> **Dabin Jung (2016 summer)<br /> **Boreum Nam (2016 summer)<br /> **Seungun Lee (2016 summer)<br /> **Yeaji Kim (2016 summer and fall)<br /> **Sangyoung Lee (2017 winter)<br /> **Heejun Jang (2017 winter &amp; spring), went to KIST as Research Assistant<br /> **Jungha Lee, went to graduate school (2017 summer), went to graduate school (Seoul National Univ.)<br /> **Seunghyun Wang, went to graduate school (2017 summer) went to graduate school (KAIST)<br /> **Dong-Min Yang (2017 fall)<br /> **Doo-Hee Lee (2017 fall)<br /> **Suk-Jae Han (2018 winter)<br /> **Ji-Eun Han (2018 winter)<br /> **Yuri Ko (2018 spring)<br /> **Sung-Woo Kim (2018 spring)<br /> **Woosung Kwon (2018 summer)<br /> **Soyun Kong (2018 summer)<br /> **Hojeong Keum (2018 summer and fall)<br /> **Sungjun Lim (2018 summer and fall)<br /> **Jiyoon Lee (2018 summer and fall)<br /> **Junik Park (2019 winter)<br /> **Lee Yoo (2019 winter &amp; spring)<br /> **Yeonwha Kim (2019 winter &amp; spring)<br /> **Sohee Kim (2019 spring)<br /> **Juseong Lee (2019 spring)<br /> **Junyoung Yang (2019 summer)<br /> **Junyoung Ma (2019 summer)<br /> **Dayun Jung (2019 summer)<br /> **Hanjoon Kim (2019 summer)</div>

Junha92 https://netbiolab.org/wiki/index.php?title=File:Junha_Cha_profile2.png&diff=5071 2019-08-23T03:36:12Z

<p>Junha92: </p> <hr /> <div></div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:JH_Cha&diff=5066 2019-08-23T02:38:48Z

<p>Junha92: </p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha_Cha_profile.png|300px]]<br /> |<br /> *'''Master's program student''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2019), Department of Systems Biology, Yonsei University<br /> E-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single Cell Genomics<br /> ** Construction of Functional Gene Network from scRNA-seq Data<br /> ** Analysis of Clinical Immunotherapy Samples <br /> <br /> <br /> * '''Hobby'''<br /> ** Guitar, Basketball, Travelling<br /> ** Diving<br /> ** <br /> |}</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:S_Lee&diff=5062 2019-08-23T02:33:34Z

<p>Junha92: Undo revision 5060 by Junha92 (talk)</p> <hr /> <div>===Sungho Lee===<br /> {|<br /> |[[File:Shlee profile.png|300px]]<br /> |<br /> *'''Ph.D program student''' (2017~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2013-2017), Department of Biomedical Science, CHA University<br /> E-mail: shlee354@gmail.com<br /> <br /> * '''Current research topic(s)'''<br /> ** Human microbiota<br /> ** Functional gene network of plant genome<br /> &lt;br&gt;<br /> * '''Hobby'''<br /> ** Weight training<br /> ** Python, C++, R<br /> |}<br /> <br /> ==Publications==<br /> * Lee T*, '''Lee S*''', Yang S, Lee I**. MaizeNet: A co-functional network for network-assisted systems genetics in Zea mays, ''The Plant Journal'' 2019 Aug '''99(3)''':571-582</div>

Junha92 https://netbiolab.org/wiki/index.php?title=People:S_Lee&diff=5060 2019-08-23T02:32:05Z

<p>Junha92: </p> <hr /> <div>===Junha Cha===<br /> {|<br /> |[[File:Junha_Cha_profile.png|300px]]<br /> |<br /> *'''Master's program student''' (2019~), Department of Biotechnology, Yonsei University<br /> *'''B.S.''' (2012-2018), Department of Systems Biology, Yonsei University<br /> E-mail: junhacha@yonsei.ac.kr<br /> <br /> * '''Current research topic(s)'''<br /> ** Single-Cell Genomics<br /> ** Functional gene network from scRNA-seq data<br /> ** Analysis of Immunotherapy<br /> &lt;br&gt;<br /> * '''Hobby'''<br /> ** Guitar, Basketball, Travelling<br /> ** Diving<br /> |}<br /> <br /> ==Publications==</div>

Junha92 https://netbiolab.org/wiki/index.php?title=File:Junha_Cha_profile.png&diff=5056 2019-08-23T02:28:26Z

<p>Junha92: </p> <hr /> <div></div>

Junha92