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	<id>https://netbiolab.org/wiki/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Smyang</id>
	<title>Network Biology Lab - User contributions [en]</title>
	<link rel="self" type="application/atom+xml" href="https://netbiolab.org/wiki/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Smyang"/>
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	<updated>2026-05-19T17:31:20Z</updated>
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		<id>https://netbiolab.org/wiki/index.php?title=People&amp;diff=6142</id>
		<title>People</title>
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		<updated>2024-02-13T13:25:08Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
=='''Scientists &amp;amp; Research Staff'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;1100&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:이인석교수님-상체.jpg|100px|link=people:IS_Lee]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Smyang_thumb.jpg|100px|link=people:SM_Yang]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Junha_Cha_profile2.png|70px|link=People:JH_Cha]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:나연.png|70px|link=People:NY_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:SeungbynBaek AACR.jpg|80px|link=People:SB_Baek]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:KakaoTalk 20200914 132021053.jpg|80px|link=People:IS_Choi]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:chajh profile.jpg|70px|link=People:Junhyeong_Cha]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:KakaoTalk 20210225 184422243.jpg|70px|link=People:Junyeong_Ma]]&lt;br /&gt;
|-&lt;br /&gt;
&amp;lt;!-- width=160px; 로 정렬했음. --&amp;gt;&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[people:IS_Lee|&amp;lt;big&amp;gt;'''Insuk Lee'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[people:SM_Yang|&amp;lt;big&amp;gt;'''Sunmo Yang'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:JH_Cha|&amp;lt;big&amp;gt;'''Junha Cha'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:NY_Kim|&amp;lt;big&amp;gt;'''Nayeon Kim'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:SB_Baek|&amp;lt;big&amp;gt;'''Seungbyn Baek'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:IS_Choi|&amp;lt;big&amp;gt;'''Ilseok Choi'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:Junhyeong_Cha|&amp;lt;big&amp;gt;'''Junhyeong Cha'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:Junyeong_Ma|&amp;lt;big&amp;gt;'''Junyeong Ma'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|-&lt;br /&gt;
&amp;lt;!-- 과정, 파트, 입학연도 사이에 줄바꿈 태그 (&amp;lt;br/&amp;gt;) 필수 --&amp;gt;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:IS_Lee|Principal Investigator&amp;lt;br/&amp;gt;Professor]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SM_Yang|Bioinformatics&amp;lt;br/&amp;gt;Programmer&amp;lt;br/&amp;gt;&amp;amp; Sys. Admin]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:JH_Cha|Ph.D candidate&amp;lt;br/&amp;gt;(Single-cell Biology)&amp;lt;br/&amp;gt;(2019.9 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:NY_Kim|Ph.D candidate&amp;lt;br/&amp;gt;(Microbiome)&amp;lt;br/&amp;gt;(2019.9 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:SB_Baek|Ph.D candidate&amp;lt;br/&amp;gt;(Single-cell Biology)&amp;lt;br/&amp;gt;(2019.9 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:IS_Choi|Ph.D candidate&amp;lt;br/&amp;gt;(Single-cell Biology)&amp;lt;br/&amp;gt;(2020.9 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:Junhyeong_Cha|Ph.D candidate&amp;lt;br/&amp;gt;(Microbiome)&amp;lt;br/&amp;gt;(2020.9 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:Junyeong_Ma|Ph.D candidate&amp;lt;br/&amp;gt;(Microbiome)&amp;lt;br/&amp;gt;(2021.3 - )]]&lt;br /&gt;
|}&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;962.5&amp;quot;&lt;br /&gt;
&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:profile_front_resized.jpg|70px|link=People:Han-June_KIM]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:KakaoTalk_20210825_174338962.jpg|70px|link=People:EuiJeong_Sung]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Hunsei.PNG|70px|link=People:Sehun_Ahn]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:고건.jpg|70px|link=People:Geon_Koh]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:원종.jpg|70px|link=People:WonJong_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:정연.jpg|70px|link=People:Jungyeon_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Yerin_1.jpg|70px|link=People:Yerin_Kim]]&lt;br /&gt;
|-&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:Hanjune_Kim|&amp;lt;big&amp;gt;'''Hanjune Kim'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:Euijeong_Sung|&amp;lt;big&amp;gt;'''Euijeong Sung'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:Sehun_Ahn|&amp;lt;big&amp;gt;'''Sehun Ahn'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:Geon Koh|&amp;lt;big&amp;gt;'''Geon Koh'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:WonJong_Kim|&amp;lt;big&amp;gt;'''Wonjong Kim'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:Jungyeon_Kim|&amp;lt;big&amp;gt;'''Jungyeon Kim'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|width=160px; align=&amp;quot;center&amp;quot;|[[People:Yerin_Kim|&amp;lt;big&amp;gt;'''Yerin Kim'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:Hanjune_Kim|Integrated&amp;lt;br/&amp;gt;Ph.D course&amp;lt;br/&amp;gt;(Microbiome)&amp;lt;br/&amp;gt;(2021.3 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:Euijeong_Sung|Integrated&amp;lt;br/&amp;gt;Ph.D course&amp;lt;br/&amp;gt;(Single-cell Biology)&amp;lt;br/&amp;gt;(2021.9 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:Sehun_Ahn|Integrated&amp;lt;br/&amp;gt;Ph.D course&amp;lt;br/&amp;gt;(Microbiome)&amp;lt;br/&amp;gt;(2022.3 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:Geon_Koh|Integrated&amp;lt;br/&amp;gt;Ph.D course&amp;lt;br/&amp;gt;(Microbiome)&amp;lt;br/&amp;gt;(2022.9 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:WonJong_Kim|Integrated&amp;lt;br/&amp;gt;Ph.D course&amp;lt;br/&amp;gt;(Microbiome)&amp;lt;br/&amp;gt;(2023.3 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:Jungyeon_Kim|Integrated&amp;lt;br/&amp;gt;Ph.D course&amp;lt;br/&amp;gt;(Microbiome)&amp;lt;br/&amp;gt;(2023.3 - )]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:Yerin_Kim|Integrated&amp;lt;br/&amp;gt;Ph.D course&amp;lt;br/&amp;gt;(Microbiome)&amp;lt;br/&amp;gt;(2024.3 - )]]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Administrative Assistant'''==&lt;br /&gt;
*Seomi Lee&lt;br /&gt;
&lt;br /&gt;
=='''Undergraduate Students'''==&lt;br /&gt;
*Yerin Kim&lt;br /&gt;
*Sang Min Park&lt;br /&gt;
*Minsun Seo&lt;br /&gt;
*Jaeryun Sim &lt;br /&gt;
*Sun Min Lim&lt;br /&gt;
*Yurim Jung&lt;br /&gt;
&lt;br /&gt;
=='''Alumni'''==&lt;br /&gt;
*'''Former Post-docs and Staff Scientists'''&lt;br /&gt;
**1. Taeyun Oh (2009.5-2011.12), currently Senior Researcher at Cowellbiogim, Korea  &lt;br /&gt;
**2. Sohyun Hwang (2010.3-2015.8), currently Associate Professor (차의과대학 의과학과 교수), [https://grad.cha.ac.kr/%ed%99%a9%ec%86%8c%ed%98%84/ Department of Biomedical Science, CHA University], Korea [https://scholar.google.com/citations?user=z5yC9cwAAAAJ&amp;amp;hl=en Google Scholar]&lt;br /&gt;
**3. Samuel Beck (2011.2-2011.12), currently Associate Professor, Boston University, USA  (미 보스턴 대학교 부교수), [https://beck310.wixsite.com/becklab Lab Homepage]&lt;br /&gt;
**4. Jawon Song (2011.1-2012.5), currently Research Associate (미국 텍사스슈퍼컴퓨팅센터 선임연구원), [https://www.tacc.utexas.edu/about/directory/jawon-song Texas Advanced Computing Center], Austin, TX, USA [https://scholar.google.com/citations?user=wv61wGoAAAAJ&amp;amp;hl=en Google Scholar]&lt;br /&gt;
**5. Yoonhee Ko (2012.8-2014.2), currently Associate Professor (한국외국어대 바이오공학과 교수), [https://hufsbiomed.weebly.com/ Department of Biomedical Engineering, Hankuk University of Foreign Studies], Korea [https://scholar.google.com/citations?user=GBxCYX8AAAAJ&amp;amp;hl=en Google Scholar]&lt;br /&gt;
**6. Jonghoon Lee (2013.10-2014.2), currently Associate Professor (가천대학교 식품생명공학과 교수), [https://www.gachon.ac.kr/foodbiotech/6142/subview.do Department of Food Biotechnology, Gachon University], Korea &lt;br /&gt;
**7. Jung Eun Shim (2009.8-2017.11), currently Staff Scientist at Yonsei Genomics Center Bioinformatics Data Analysis Core (연세의료원 유전체센터 생명정보분석코어 책임연구원)&lt;br /&gt;
&lt;br /&gt;
*'''Former Graduate Students (Ph.D)'''&lt;br /&gt;
**1. Junha Shin (2008.9-2014.2), PhD; currently Postdoc Fellow, University of Wisconsin-Madison (미국 위스콘신주립대 박사후연구원), USA [https://roylab.discovery.wisc.edu/ Roy Lab]&lt;br /&gt;
**2. Hanhae Kim (2009.9-2015.2), PhD; currently Research Fellow (한국과학기술기획평가원 연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;amp;T Evaluation and Planning (KISTEP)]&lt;br /&gt;
**3. Ara Cho (2009.9-2015.2), PhD; currently Research Fellow (한국과학기술기획평가원 연구위원), [http://www.kistep.re.kr Korea Institute of S&amp;amp;T Evaluation and Planning (KISTEP)]&lt;br /&gt;
**4. Eiru Kim (2010.9-2016.8), PhD; currently Senior Expert in Data Science, [https://www.gnf.org/ The Genomics Institute of the Novartis Research Foundation], San Diego, USA (노바티스 선임데이터분석연구원)&lt;br /&gt;
**5. Tak Lee (2011.3-2017.2), PhD; currently Senior Bioinformatician, [https://www.mpipz.mpg.de/en Max Planck Institute for Plant Breeding Research] (독일 막스플랭크 연구소 선임연구원) &lt;br /&gt;
**6. Heonjong Han (2013.3~2019.8), PhD; currently Bioinformatics engineer at [https://3billion.io/ 3billion] (바이오기업 데이터사이언티스트)&lt;br /&gt;
**7. Kyungsoo Kim (2013.3~2020.2), PhD; currently Research Professor at Severance Hospital (강남세브란스의료원 유방암센터 연구교수)&lt;br /&gt;
**8. Jae-Won Cho (2016.9~2021.2), PhD; currently Postdoc Fellow at Harvard Medical School (하버드의대 박사후 연구원) [https://scholar.google.com/citations?user=H4jO_DQAAAAJ&amp;amp;hl=en Hemberg Lab] &lt;br /&gt;
**9. Chan Yeong Kim (2015.3~2021.2), PhD; currently Postdoc Fellow at European Molecular Biology Laboratory in Heidelberg (유럽연합분자생물학연구소 박사후 연구원) [http://www.bork.embl.de/j/ Bork Group]&lt;br /&gt;
**10. Sungho Lee (2017.3-2024.2), PhD; currently Data Scientist at [http://www.mogam.re.kr/kor/ MOGAM Institute for Biomedical Research] (목암생명과학연구소, (주)녹십자 출연 연구소, 선임연구원) &lt;br /&gt;
&lt;br /&gt;
*'''Former Graduate Students (Master's degree)'''&lt;br /&gt;
**1. Sun-Gou Ji (2009.9-2011.8), M.Eng.; PhD from University of Cambridge (Sanger Genome center); currently Vice President, Computational Genetics at [https://bridgebio.com/ BridgeBio Pharma], Boston, USA (미 바이오기업 임원)&lt;br /&gt;
**2. Hyojin Kim (2013.3-2015.2), M.Eng.; PhD from University of Aachen; currently Computational Scientist, Uniklinikum Aachen (the university hospital of the city of Aachen), Germany (독일 아헨대학병원 데이터사이언티스트)&lt;br /&gt;
**3. Hongseok Shim (2013.9-2015.8), M.Eng.; currently PhD student, Arizona State University, Biomedical Informatics program (애리조나주립대 생물정보학 박사과정)&lt;br /&gt;
**4. Sunmo Yang (2014.9-2017.2), M.Eng. currently Bioinformatics programmer, Yonsei University (연세대 네트워크생명공학 연구실 책임데이터연구원)&lt;br /&gt;
**5. Muyoung Lee (2016.3-2018.2), M.Eng. currently PhD student, University of Texas at Austin, Cellular and Molecular Biology Program (텍사스주립대 생물정보학 박사과정)&lt;br /&gt;
**6. Jiwon Yu (2021.9-2023.8), M.Eng. currently Data Scientist at [https://www.samsungbioepis.com/kr/index.do SAMSUNG BIOEPIS] (삼성바이오에피스 데이터사이언티스트)&lt;br /&gt;
&lt;br /&gt;
*'''Former Visiting Scientists/Students'''&lt;br /&gt;
**1. Minkyung Shin (2012.3-2012.7), went to University of Southern California graduate school &lt;br /&gt;
**2. Paul Chung (2012 summer), currently E-Commerce Analyst/Coordinator at [http://www.riotgames.com/ Riot Games], USA&lt;br /&gt;
**3. Hyunjin Cho (2014 summer), currently Bioinformatics research assistant at [http://www.libd.org/ The Lieber Institute for Brain Development | LIBD], USA&lt;br /&gt;
**4. Michael Chung (2016.8-2016.12), currently work at [https://about.meta.com/ Meta], USA&lt;br /&gt;
&lt;br /&gt;
*'''Former Undergraduate Students'''&lt;br /&gt;
**1. Ila Shin, went to medical school (Yonsei Univ.) Currently Professor, Kyunghee University School of Medicine (경희대학교 의과대학 교수)&lt;br /&gt;
**2. Yoonkyung Ko&lt;br /&gt;
**3. Sangyo Park, went to law school (Kyounghee Univ.)&lt;br /&gt;
**4. Jayoon Shin, went to medical school (Pusan National Univ.)&lt;br /&gt;
**5. Dongjoo Sun, went to dental school (Wongwang Univ.)&lt;br /&gt;
**6. Eulsoo Kim&lt;br /&gt;
**7. Myungwhan Lee, went to medical school (Yonsei Univ.)&lt;br /&gt;
**8. Moonhee Lee, went to graduate school (University of Amsterdam, Netherlands)&lt;br /&gt;
**9. Jinhyun Ju, went to graduate school (Cornell Medical School, Computational Systems Biology); Currently Principal Computational Biologist, Cancer Genomics at [https://bridgebio.com/ BridgeBio Pharma], Seattle, USA (미 바이오기업 선임연구원)&lt;br /&gt;
**10. Haeyoung Shin, went to graduate school (Brown University, Computational Neuroscience); Currently Professor, Seoul National University (서울대학교 생명과학부 교수) &lt;br /&gt;
**11. Joonghee Soh, went to graduate school (KAIST, Culture Technology)&lt;br /&gt;
**12. Hee Jung Cho, went to graduate school (UC Berkeley) &lt;br /&gt;
**13. TaeHwan Kim, went to medical school&lt;br /&gt;
**14. Joohyung Kim, went to medical school (Kyungpook National Univ.)&lt;br /&gt;
**15. Donghyun Shin, went to medical school (Yonsei Univ.)&lt;br /&gt;
**16. Byunghee Kang (2015 spring - 2016 summer), went to graduate school (PosTech)&lt;br /&gt;
**17. Sunphil Kim (2016 winter)&lt;br /&gt;
**18. Jaeho Shim (2016 winter)&lt;br /&gt;
**19. Seunghyun Shin (2016 spring)&lt;br /&gt;
**20. Aejoo Hong (2016 spring)&lt;br /&gt;
**21. Changbae Bang (2016 summer), went to medical school (Yonsei Univ.)&lt;br /&gt;
**22. Seoyoung Choi (2016 summer)&lt;br /&gt;
**23. Dabin Jung (2016 summer)&lt;br /&gt;
**24. Boreum Nam (2016 summer)&lt;br /&gt;
**25. Seungun Lee (2016 summer)&lt;br /&gt;
**26. Yeaji Kim (2016 summer and fall)&lt;br /&gt;
**27. Sangyoung Lee (2017 winter)&lt;br /&gt;
**28. Heejun Jang (2017 winter &amp;amp; spring), went to KIST as Research Assistant&lt;br /&gt;
**29. Jungha Lee (2017 summer), went to graduate school (Seoul National Univ.)&lt;br /&gt;
**30. Seunghyun Wang (2017 summer), went to graduate school (KAIST)&lt;br /&gt;
**31. Dong-Min Yang (2017 fall)&lt;br /&gt;
**32. Doo-Hee Lee (2017 fall)&lt;br /&gt;
**33. Suk-Jae Han (2018 winter)&lt;br /&gt;
**34. Ji-Eun Han (2018 winter)&lt;br /&gt;
**35. Yuri Ko (2018 spring)&lt;br /&gt;
**36. Sung-Woo Kim (2018 spring)&lt;br /&gt;
**37. Woosung Kwon (2018 summer)&lt;br /&gt;
**38. Soyun Kong (2018 summer)&lt;br /&gt;
**39. Hojeong Keum (2018 summer and fall)&lt;br /&gt;
**40. Sungjun Lim (2018 summer and fall)&lt;br /&gt;
**41. Jiyoon Lee (2018 summer and fall)&lt;br /&gt;
**42. Ilseok Choi(2019 winter, spring, summer and fall, 2020 winter, spring)&lt;br /&gt;
**43. Junik Park (2019 winter)&lt;br /&gt;
**44. Lee Yoo (2019 winter &amp;amp; spring)&lt;br /&gt;
**45. Yeonwha Kim (2019 winter &amp;amp; spring)&lt;br /&gt;
**46. Sohee Kim (2019 spring)&lt;br /&gt;
**47. Juseong Lee (2019 spring)&lt;br /&gt;
**48. Junyoung Yang (2019 spring &amp;amp; summer)&lt;br /&gt;
**49. Junyoung Ma (2019 summer, 2020 winter, summer, fall, 2021 winter)&lt;br /&gt;
**50. Dayun Jung (2019 summer)&lt;br /&gt;
**51. Hanjoon Kim (2019 summer, 2021 winter)&lt;br /&gt;
**52. Hyungjin Kim (2020 winter, spring)&lt;br /&gt;
**53. Sujin Hyun (2020 winter)&lt;br /&gt;
**54. Hyuki Lee (2020 winter)&lt;br /&gt;
**55. Donghwan Lee (2020 winter)&lt;br /&gt;
**56. Junhyung Cha (2020 spring, summer)&lt;br /&gt;
**57. Jiwon Yu (2020 summer, 2021 Spring, summer)&lt;br /&gt;
**58. Dong Seok Kim (2020 summer)&lt;br /&gt;
**59. Donggeun Lee (2020 summer)&lt;br /&gt;
**60. Sehun Ahn (2020 summer, 2021 winter, spring, summer, 2022 winter)&lt;br /&gt;
**61. Jiho Kim (2020 summer)&lt;br /&gt;
**62. Euijung Seong (2020 fall, 2021 spring, summer)&lt;br /&gt;
**63. Junhan Kim (2021 winter &amp;amp; spring)&lt;br /&gt;
**64. Suyong Choi (2021 winter)&lt;br /&gt;
**65. Sujin Pyeon (2021 Spring)&lt;br /&gt;
**66. Hyeon Hee Ji (2021 Spring)&lt;br /&gt;
**67. Semin Kim (2021 Summer)&lt;br /&gt;
**68. Su Hwan Kim (2021 Summer)&lt;br /&gt;
**69. Yongbin Kim (2021 Summer)&lt;br /&gt;
**70. Nan Park (2021 Summer)&lt;br /&gt;
**71. Hoyong Jung (2021 Summer)&lt;br /&gt;
**72. Ingyeong Koh (2021 Summer)&lt;br /&gt;
**73. Jongbin Jeong (2022 Winter)&lt;br /&gt;
**74. Sungchul Yang (2022 Winter, Spring, Summer)&lt;br /&gt;
**75. Hyojung Lee (2022 Winter, Spring)&lt;br /&gt;
**76. Jun Hyeong Kim (2022 Winter, Spring)&lt;br /&gt;
**77. Young Ji Roh (2022 Spring, Summer)&lt;br /&gt;
**78. Geon Koh (2022 Spring, Summer)&lt;br /&gt;
**79. Hayoung Kang (2022 Summer, 2023 Spring)&lt;br /&gt;
**80. Won Jong Kim (2022 Summer, Fall, 2023 Winter)&lt;br /&gt;
**81. Christian Lee (2022 Summer)&lt;br /&gt;
**82. Je Yun Kang (2022 Summer)&lt;br /&gt;
**83. Sumin Lee (2022 Fall)&lt;br /&gt;
**84. Jungyeon Kim (2022 Fall, 2023 Winter)&lt;br /&gt;
**85. Seol Song (2023 Winter)&lt;br /&gt;
**86. Soyeon Kim (2023 Summer)&lt;br /&gt;
**87. Sieun Park (2023 Summer)&lt;br /&gt;
**88. Gunhyeong Lee (2023 Summer)&lt;br /&gt;
**89. Yunseo Han (2023 Summer)&lt;br /&gt;
**90. Jae Hyun Kim (2023 Summer)&lt;br /&gt;
**91. Jeong-min Seo (2023 Summer)&lt;br /&gt;
**92. Yerin Kim (2023 Fall)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=File:Smyang_thumb.jpg&amp;diff=6141</id>
		<title>File:Smyang thumb.jpg</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=File:Smyang_thumb.jpg&amp;diff=6141"/>
		<updated>2024-02-13T13:24:04Z</updated>

		<summary type="html">&lt;p&gt;Smyang: Smyang uploaded a new version of &amp;amp;quot;File:Smyang thumb.jpg&amp;amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=File:Smyang_thumb.jpg&amp;diff=6140</id>
		<title>File:Smyang thumb.jpg</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=File:Smyang_thumb.jpg&amp;diff=6140"/>
		<updated>2024-02-13T13:18:46Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Teaching&amp;diff=6020</id>
		<title>Teaching</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Teaching&amp;diff=6020"/>
		<updated>2023-05-31T10:56:33Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== Teaching materials for Experiment in microbiology and biochemical engineering laboratory Course ==&lt;br /&gt;
[//netbiolab.org/wiki/images/1/18/2018_NBLexperiment_training_material.zip 2020 netbiolab experiment teaching material]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/8/8e/2019_nbl_experiment.pdf 2019 netbiolab experiment teaching material (pdf)]&lt;br /&gt;
&lt;br /&gt;
== Teaching materials for Yonsei Bioinformatics Course ==&lt;br /&gt;
[//netbiolab.org/wiki/teaching_materials/2023_1_WebMEV_material.zip 2023 Bioinformatics WebMeV Practice]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/teaching_materials/2019_1_Kallisto_material.zip 2023 Bioinformatics Kallisto Practice]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/teaching_materials/Bioinformatics_Machine_Learning_Practice_2023.zip 2023 Bioinformatics Machine Learning Practice]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/teaching_materials/Tensorflow_2023.zip 2023 Bioinformatics Deep Learning Practice (Tensorflow)]&lt;br /&gt;
&lt;br /&gt;
== Teaching materials for BIML workshop ==&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/0/0e/BIML2020_Lecture_Files.zip BIMIL2020 scGRN &amp;amp; scATAC lecture files]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/7/7b/2017_BIML_0216_2.zip BIML2017 practice 2 PPT file &amp;amp; python scripts]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/4/4b/Practice1.pdf BIML2016 practice 1 PPT file]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/c/c0/Biml_python_scripts.zip BIML2016 practice 2 python scripts]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;div&amp;gt;{{#widget:AddHtml|content=&amp;lt;img src=&amp;quot;../wiki/wordcloud_2018_2020.jpg&amp;quot; title=&amp;quot;Research Keyword Cloud (2018-2020)&amp;quot; /&amp;gt;}}&amp;lt;/div&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=People:SM_Yang&amp;diff=5820</id>
		<title>People:SM Yang</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=People:SM_Yang&amp;diff=5820"/>
		<updated>2022-08-19T15:35:09Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|&lt;br /&gt;
| [[File:Smyang.jpg|150px]]&lt;br /&gt;
| &lt;br /&gt;
===Sunmo Yang===&lt;br /&gt;
&lt;br /&gt;
'''Bioinformatics Programmer / Server Administrator''' (2010-Current)&lt;br /&gt;
&lt;br /&gt;
* M.E. Graduate Program in Biomaterials Sciences and Engineering, Yonsei Univ. Major in Biotechnology. (2014.9-2017.2)&lt;br /&gt;
* B.M. Dept. of Management, Korea National Open Univ. (2009-2014)&lt;br /&gt;
* Dept. of Natural Science, Yonsei Univ. (1998-2007)&lt;br /&gt;
&lt;br /&gt;
* Leadon (2006-2007, Web agency of Eland group)&lt;br /&gt;
** E-marketing&lt;br /&gt;
&lt;br /&gt;
* Pixdine (2005-2006, Web Agency)&lt;br /&gt;
** Server Admistration (Windows/Linux/Network) and Web development&lt;br /&gt;
** Projects: Coca-cola Korea (Fanta, Cokeplay), Audi Korea&lt;br /&gt;
&lt;br /&gt;
==Publications==&lt;br /&gt;
* '''Yang S'''*, Kim CY, Hwang S, Kim E, Kim H, Shim H, Lee I**, COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH). ''Nucleic Acids Research'' 2017 Jan 4; 45(D1):D389-D396&lt;br /&gt;
* Eiru Kim*, Dasom Bae*, '''Sunmo Yang*''', Gunhwan Ko, Sungho Lee, Byungwook Lee**, Insuk Lee**. BiomeNet: A database for construction and analysis of functional interaction networks for any species with a sequenced genome. ''Bioinformatics'' 2020 Mar 1:36(5):1584-1589&lt;br /&gt;
* Sungho Lee*, Tak Lee*, '''Sunmo Yang''' and Insuk Lee**, BarleyNet: a network-based functional omics analysis server for cultivated barley, Hordeum vulgare L. ''Frontiers in Plant Science'' 2020 Feb 18;11:98&lt;br /&gt;
* Kyungsoo Kim*, '''Sunmo Yang''', Sang-Jun Ha, Insuk Lee**, VirtualCytometry: a webserver for evaluating immune cell differentiation using single-cell RNA sequencing data. ''Bioinformatics'' 2020 Jan 15;36(2):546-5512020 Mar 1:36(5):1584-1589&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
E-mail : wool100(at)yonsei.ac.kr&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|&lt;br /&gt;
* Interest&lt;br /&gt;
** New mobile gadgets&lt;br /&gt;
** Cloud Computing, Virtual Computing&lt;br /&gt;
** W3C's Standards&lt;br /&gt;
&lt;br /&gt;
* Available Skills&lt;br /&gt;
** Linux / Windows Server Administration&lt;br /&gt;
** Cisco Routers &amp;amp; Alteon L4 Switches Administration&lt;br /&gt;
** Coding Web Markup Language HTML/CSS&lt;br /&gt;
** ASP / ASP.net / C / PHP / Perl / Python / Java&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Teaching&amp;diff=5504</id>
		<title>Teaching</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Teaching&amp;diff=5504"/>
		<updated>2021-05-19T18:47:57Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== Teaching materials for Experiment in microbiology and biochemical engineering laboratory Course ==&lt;br /&gt;
[//netbiolab.org/wiki/images/8/8e/2019_nbl_experiment.pdf 2019 netbiolab experiment teaching material (pdf)]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/1/18/2018_NBLexperiment_training_material.zip 2020 netbiolab experiment teaching material]&lt;br /&gt;
&lt;br /&gt;
== Teaching materials for Yonsei Bioinformatics Course ==&lt;br /&gt;
[//netbiolab.org/wiki/teaching_materials/2019_1_Kallisto_material.zip 2019 Bioinformatics Kallisto Practice]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/teaching_materials/2019_1_WebMEV_material.zip 2019 Bioinformatics WebMeV Practice]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/teaching_materials/Bioinformatics_Machine_Learning_Practice_2021.zip 2021 Bioinformatics Machine Learning Practice]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/b/b1/2020_1_Tensorflow.zip 2020 Bioinformatics Deep Learning Practice (Tensorflow)]&lt;br /&gt;
&lt;br /&gt;
== Teaching materials for BIML workshop ==&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/0/0e/BIML2020_Lecture_Files.zip BIMIL2020 scGRN &amp;amp; scATAC lecture files]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/7/7b/2017_BIML_0216_2.zip BIML2017 practice 2 PPT file &amp;amp; python scripts]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/4/4b/Practice1.pdf BIML2016 practice 1 PPT file]&lt;br /&gt;
&lt;br /&gt;
[//netbiolab.org/wiki/images/c/c0/Biml_python_scripts.zip BIML2016 practice 2 python scripts]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;div&amp;gt;{{#widget:AddHtml|content=&amp;lt;img src=&amp;quot;../wiki/wordcloud_2018_2020.jpg&amp;quot; title=&amp;quot;Research Keyword Cloud (2018-2020)&amp;quot; /&amp;gt;}}&amp;lt;/div&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=People:SM_Yang&amp;diff=5486</id>
		<title>People:SM Yang</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=People:SM_Yang&amp;diff=5486"/>
		<updated>2021-04-15T16:36:30Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|&lt;br /&gt;
| [[File:Smyang.jpg|150px]]&lt;br /&gt;
| &lt;br /&gt;
===Sunmo Yang===&lt;br /&gt;
&lt;br /&gt;
'''Bioinformatics Programmer / Server Administrator''' (2010-Current)&lt;br /&gt;
&lt;br /&gt;
* M.E. Graduate Program in Biomaterials Sciences and Engineering, Yonsei Univ. Major in Biotechnology. (2014.9-2017.2)&lt;br /&gt;
* B.M. Dept. of Management, Korea National Open Univ. (2009-2014)&lt;br /&gt;
* Dept. of Natural Science, Yonsei Univ. (1998-2007)&lt;br /&gt;
&lt;br /&gt;
* Leadon (2006-2007, Web agency of Eland group)&lt;br /&gt;
** E-marketing&lt;br /&gt;
&lt;br /&gt;
* Pixdine (2005-2006, Web Agency)&lt;br /&gt;
** Server Admistration (Windows/Linux/Network) and Web deveolopment&lt;br /&gt;
** Projects: Coca-cola Korea (Fanta, Cokeplay), Audi Korea&lt;br /&gt;
&lt;br /&gt;
==Publications==&lt;br /&gt;
* '''Yang S'''*, Kim CY, Hwang S, Kim E, Kim H, Shim H, Lee I**, COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH). ''Nucleic Acids Research'' 2017 Jan 4; 45(D1):D389-D396&lt;br /&gt;
* Eiru Kim*, Dasom Bae*, '''Sunmo Yang*''', Gunhwan Ko, Sungho Lee, Byungwook Lee**, Insuk Lee**. BiomeNet: A database for construction and analysis of functional interaction networks for any species with a sequenced genome. ''Bioinformatics'' 2020 Mar 1:36(5):1584-1589&lt;br /&gt;
* Sungho Lee*, Tak Lee*, '''Sunmo Yang''' and Insuk Lee**, BarleyNet: a network-based functional omics analysis server for cultivated barley, Hordeum vulgare L. ''Frontiers in Plant Science'' 2020 Feb 18;11:98&lt;br /&gt;
* Kyungsoo Kim*, '''Sunmo Yang''', Sang-Jun Ha, Insuk Lee**, VirtualCytometry: a webserver for evaluating immune cell differentiation using single-cell RNA sequencing data. ''Bioinformatics'' 2020 Jan 15;36(2):546-5512020 Mar 1:36(5):1584-1589&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
E-mail : wool100(at)yonsei.ac.kr&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|&lt;br /&gt;
* Interest&lt;br /&gt;
** New mobile gadgets&lt;br /&gt;
** Cloud Computing, Virtual Computing&lt;br /&gt;
** W3C's Standards (html5 css ajax)&lt;br /&gt;
** IFRS(Accounting)&lt;br /&gt;
&lt;br /&gt;
* Available Skills&lt;br /&gt;
** Linux / Windows Server Administration&lt;br /&gt;
** Cisco Routers &amp;amp; Alteon L4 Switches Administration&lt;br /&gt;
** Coding Web Markup Language HTML/CSS&lt;br /&gt;
** ASP / ASP.net / PHP / Perl / Python / Java&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Software&amp;diff=4653</id>
		<title>Software</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Software&amp;diff=4653"/>
		<updated>2018-01-25T04:31:01Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
=='''Gene Regulation Research Tools'''==&lt;br /&gt;
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST''': A reference database of TF-target interactions in human and mouse&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Network Medicine Tools '''==&lt;br /&gt;
[[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] '''MUFFINN''': Cancer gene discovery via network analysis of somatic mutation data&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:GWAB_logo.png |150px|link=http://www.inetbio.org/gwab]] '''GWAB''': A web server for network-based boosting of human genome-wide association data&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] '''COEXPEDIA''': Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] '''MORPHIN''': Network-assisted prediction of disease pathways in model organisms&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] '''RIDDLE''': Network-assisted Gene Set Analysis (human only)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Co-functional Gene Networks'''==&lt;br /&gt;
&lt;br /&gt;
==''Human and Laboratory Animals''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;500&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:danionet_logo.png|150px|link=http://www.inetbio.org/danionet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:Flynet.png|150px|link=http://www.inetbio.org/flynet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Homo sapiens''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Mus musculus''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Danio rerio''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Drosophila melanogaster''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Caenorhabditis elegans''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Plants''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;400&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Aranet_v2.jpg|150px|link=http://www.inetbio.org/aranet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Maizenet_logo_4th.png|150px|link=http://www.inetbio.org/maizenet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:WheatNet_logo.png|150px|link=http://www.inetbio.org/wheatnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Soynetlogo.png|150px|link=http://www.inetbio.org/soynet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Tomatonet_logo.png|150px|link=http://www.inetbio.org/tomatonet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Arabidopsis thaliana''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Zea mays''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Oryza sativa''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Triticum aestivum''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Glycine max''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Solanum lycopersicum''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Fungi''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;200&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:CryptoNet.png|150px|link=http://www.inetbio.org/cryptonet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Saccharomyces cerevisiae''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Cryptococcus neoformans''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Bacteria''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;200&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Pseudomonas logo.jpg|150px|link=http://www.inetbio.org/pseudomonasnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Staphnet_logo.JPG|150px|link=http://www.inetbio.org/staphnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:KlebNet_logo.png|150px|link=http://www.inetbio.org/klebnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:XooNet_logo.png|150px|link=http://www.inetbio.org/xoonet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Pseudomonas aeruginosa (human pathogen)''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|Methicillin-resistant ''Staphylococcus aureus (human pathogen)''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Klebsiella pneumoniae (human pathogen)''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Escherichia coli (popular lab/factory bacterial species)''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Xanthomonas oryzae pv. oryzae (rice pathogen)''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Build your own co-functional networks''==&lt;br /&gt;
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]]&lt;br /&gt;
'''JiffyNet''': Instant gene network building server for newly sequenced species&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Plant GWAS Analysis'''==&lt;br /&gt;
[[File:araGWAB_logo.png|150px|link=http://www.inetbio.org/aragwab]]&lt;br /&gt;
'''araGWAB''': genome-wide association boosting for ''Arabidopsis thaliana''&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''==&lt;br /&gt;
[[WMI|&amp;lt;big&amp;gt;'''Project Page'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Domain2Pathway by Pathway Specificity (PS) '''==&lt;br /&gt;
[[PS|&amp;lt;big&amp;gt;'''Project Page'''&amp;lt;/big&amp;gt;]]&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=File:AraGWAB_logo.png&amp;diff=4652</id>
		<title>File:AraGWAB logo.png</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=File:AraGWAB_logo.png&amp;diff=4652"/>
		<updated>2018-01-25T02:55:58Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Software&amp;diff=4608</id>
		<title>Software</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Software&amp;diff=4608"/>
		<updated>2017-12-16T04:47:35Z</updated>

		<summary type="html">&lt;p&gt;Smyang: /* Bacteria */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
=='''Gene Regulation Research Tools'''==&lt;br /&gt;
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST''': A reference database of TF-target interactions in human and mouse&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Network Medicine Tools '''==&lt;br /&gt;
[[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] '''MUFFINN''': Cancer gene discovery via network analysis of somatic mutation data&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:GWAB_logo.png |150px|link=http://www.inetbio.org/gwab]] '''GWAB''': A web server for network-based boosting of human genome-wide association data&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] '''COEXPEDIA''': Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] '''MORPHIN''': Network-assisted prediction of disease pathways in model organisms&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] '''RIDDLE''': Network-assisted Gene Set Analysis (human only)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Co-functional Gene Networks'''==&lt;br /&gt;
&lt;br /&gt;
==''Human and Laboratory Animals''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;500&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:danionet_logo.png|150px|link=http://www.inetbio.org/danionet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:Flynet.png|150px|link=http://www.inetbio.org/flynet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Homo sapiens''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Mus musculus''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Danio rerio''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Drosophila melanogaster''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Caenorhabditis elegans''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Plants''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;400&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Aranet_v2.jpg|150px|link=http://www.inetbio.org/aranet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Maizenet_logo_4th.png|150px|link=http://www.inetbio.org/maizenet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:WheatNet_logo.png|150px|link=http://www.inetbio.org/wheatnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Soynetlogo.png|150px|link=http://www.inetbio.org/soynet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Tomatonet_logo.png|150px|link=http://www.inetbio.org/tomatonet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Arabidopsis thaliana''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Zea mays''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Oryza sativa''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Triticum aestivum''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Glycine max''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Solanum lycopersicum''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Fungi''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;200&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:CryptoNet.png|150px|link=http://www.inetbio.org/cryptonet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Saccharomyces cerevisiae''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Cryptococcus neoformans''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Bacteria''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;200&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Staphnet_logo.JPG|150px|link=http://www.inetbio.org/staphnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Pseudomonas logo.jpg|150px|link=http://www.inetbio.org/pseudomonasnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:XooNet_logo.png|150px|link=http://www.inetbio.org/xoonet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:KlebNet_logo.png|150px|link=http://www.inetbio.org/klebnet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|Methicillin-resistant ''Staphylococcus aureus''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Pseudomonas aeruginosa''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Escherichia coli''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Xanthomonas oryzae pv. oryzae''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Klebsiella pneumoniae''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Build your own co-functional networks''==&lt;br /&gt;
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]]&lt;br /&gt;
'''JiffyNet''': Instant gene network building server for newly sequenced species&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''==&lt;br /&gt;
[[WMI|&amp;lt;big&amp;gt;'''Project Page'''&amp;lt;/big&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Domain2Pathway by Pathway Specificity (PS) '''==&lt;br /&gt;
[[PS|&amp;lt;big&amp;gt;'''Project Page'''&amp;lt;/big&amp;gt;]]&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=File:KlebNet_logo.png&amp;diff=4607</id>
		<title>File:KlebNet logo.png</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=File:KlebNet_logo.png&amp;diff=4607"/>
		<updated>2017-12-16T04:45:59Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=4501</id>
		<title>Publications</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=4501"/>
		<updated>2017-08-16T01:45:11Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;* [http://scholar.google.com/citations?user=3uHQIOkAAAAJ Google Scholar citation report]&lt;br /&gt;
* [http://www.researcherid.com/rid/F-7722-2010 {{#widget:AddHtml|content=&amp;lt;img src='https://labs.researcherid.com/mashlets/badge/rid-idsymbol4.gif' border='0' /&amp;gt;}}]&lt;br /&gt;
* '*' First authors; '**' Corresponding authors; &lt;br /&gt;
==2017 (9)== &lt;br /&gt;
*70. Lee T*, Hwang S*, Kim CY, Shim H, Kim H, Ronald P**, Marcotte E**, '''Lee I**''', WheatNet: A genome-scale functional network for hexaploid bread wheat, Triticum aestivum, '''''Molecular Plant.''''' 2017 Aug 7;10(8):1133-1136; [https://www.ncbi.nlm.nih.gov/pubmed/28450181 pubmed] &lt;br /&gt;
*69. Lee T*, '''Lee I**''', AraNet: A Network Biology Server for Arabidopsis thaliana and Other Non-Model Plant Species, '''''Methods in Molecular Biology''''' 2017 June 17; 1629:225-238; [https://www.ncbi.nlm.nih.gov/pubmed/28623589 pubmed]&lt;br /&gt;
*68. Shim JE*, Bang C, Yang S, Lee T, Hwang S, Kim CY, Singh-Blom M, Marcotte E, '''Lee I**''', GWAB: a web server for the network-based boosting of human genome-wide association data, '''''Nucleic Acids Research''''' 2017 Apr 26; 45 (W1):W154-W161; [https://www.ncbi.nlm.nih.gov/pubmed/28449091 pubmed]&lt;br /&gt;
*67. Kim E*, '''Lee I**''', Network-Based Gene Function Prediction in Mouse and Other Model Vertebrates Using MouseNet Server, '''''Methods in Molecular Biology''''' 2017 April 28; 1611:183-198; [https://www.ncbi.nlm.nih.gov/pubmed/28451980 pubmed] [http://f1000.com/prime/727562216?bd=1 {{#widget:AddHtml|content=&amp;lt;img src=&amp;quot;http://cdn.f1000.com.s3.amazonaws.com/images/badges/badgef1000.gif&amp;quot; alt=&amp;quot;Access the recommendation on F1000Prime&amp;quot; id=&amp;quot;bg&amp;quot; width=70 /&amp;gt;}}]&lt;br /&gt;
*66. Shim JE*, Lee T*, '''Lee I**''', From sequencing data to gene functions: co-functional network approaches, '''''Animal Cells and Systems''''' 2017 April 15; 20:77-83; [http://www.tandfonline.com/doi/full/10.1080/19768354.2017.1284156 article link]&lt;br /&gt;
*65. Kim H*, Kim BS*, Shim JE, Hwang S, Yang S, Kim E, Iyer-Pascuzzi AS**, '''Lee I**''', TomatoNet: A genome-wide co-functional network for unveiling complex traits of tomato, a model crop for fleshy fruits, '''''Molecular Plant.'''''  2017 April 3; 10:652–655; [https://www.ncbi.nlm.nih.gov/pubmed/27913317 pubmed]&lt;br /&gt;
*64. Jang K*, Kim K, Cho A, '''Lee I''', Choi JK**, Network perturbation by recurrent regulatory variants in cancer, '''''PLoS Compt. Biol.''''' 2017 Mar 23;13(3):e1005449; [https://www.ncbi.nlm.nih.gov/pubmed/28333928 pubmed]&lt;br /&gt;
*63. Yang S*, Kim CY, Hwang S, Kim E, Kim H, Shim H, '''Lee I**''', COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH), '''''Nucleic Acids Research''''' 2017 Jan 4; 45(D1):D389-D396 [https://www.ncbi.nlm.nih.gov/pubmed/27679477 pubmed]&lt;br /&gt;
*62. Kim E*, Hwang S, '''Lee I**''', SoyNet: a database of co-functional networks for soybean Glycine max, '''''Nucleic Acids Research''''' 2017 Jan 4; 45(D1):D1082-D1089. [http://www.ncbi.nlm.nih.gov/pubmed/27492285 pubmed]&lt;br /&gt;
&lt;br /&gt;
==2016 (10)==&lt;br /&gt;
*61. Shin J**, '''Lee I**''', Construction of Functional Gene Networks Using Phylogenetic Profiles. '''''Methods in Molecular Biology''''' 2016 Nov 29; 1526:87-98 [http://www.ncbi.nlm.nih.gov/pubmed/27896737 pubmed]&lt;br /&gt;
*60. Shim H*, Kim JH*, Kim CY*, Hwang S, Kim H, Yang S, Lee JE**, '''Lee I**''', Function-driven discovery of disease genes in zebraﬁsh using an integrated genomics big data resource,'''''Nucleic Acids Research''''' 2016 Nov 16;44(20):9611-9623 [http://www.ncbi.nlm.nih.gov/pubmed/27903883 pubmed]&lt;br /&gt;
*59. Shim JE*, '''Lee I**''' Weighted mutual information analysis substantially improves domain-based functional network models. '''''Bioinformatics''''' 2016 Sep 15;32(18):2824-30 [http://www.ncbi.nlm.nih.gov/pubmed/27207946 pubmed]&lt;br /&gt;
*58. Lee JY*, Kim E*, Choi SM, Kim DW, Kim KP, '''Lee I**''', Kim HS** Microvesicles from brain-extract—treated mesenchymal stem cells improve neurological functions in a rat model of ischemic stroke. '''''Scientific Reports''''' 2016 Sep 9; 6:33038 [http://www.ncbi.nlm.nih.gov/pubmed/27609711 pubmed]&lt;br /&gt;
*57. Kim SM*, Kim JW, Kwak TH, Park SW, Kim KP, Park H, Lim KT, Kang K, Kim J, Yang JH, Han H, '''Lee I''', Hyun JK, Bae YM, Schöler HR, Lee HT, Han DW** Generation of Integration-free Induced Neural Stem Cells from Mouse Fibroblasts. '''''J Biol Chem'''''. 2016 Jul 1. 291(27):14199-212. [http://www.ncbi.nlm.nih.gov/pubmed/27189941 pubmed]&lt;br /&gt;
*56. Cho A*, Shim JE, Kim E, Supek F, Lehner B**, '''Lee I**'''. MUFFINN: cancer gene discovery via network analysis of somatic mutation data. '''''Genome Biology''''' 2016 June 23;17(1):129 [http://www.ncbi.nlm.nih.gov/pubmed/27333808 pubmed]&lt;br /&gt;
*55. Hwang S*, Kim CY*, Ji SG, Go J, Kim H, Yang S, Kim HJ, Cho A, Yoon SS**, '''Lee I**'''. Network-assisted investigation of virulence and antibiotic-resistance systems in Pseudomonas aeruginosa.'''''Scientific Reports''''' 2016 May 19; 6:26223. [http://www.ncbi.nlm.nih.gov/pubmed/27194047 pubmed]&lt;br /&gt;
*54. Yoon MY*, Min KB, Lee KM, Yoon Y, Kim Y, Oh YT, Lee K, Chun J, Kim BY, Yoon SH, '''Lee I''', Kim CY, Yoon SS**,. A single gene of a commensal microbe affects host susceptibility to enteric infection.'''''Nature Communications''''' 2016 May 13; 7:11606. [http://www.ncbi.nlm.nih.gov/pubmed/27173141 pubmed]&lt;br /&gt;
*53. Jo J*, Hwang S*, Kim HJ*, Hong S, Lee JE, Lee SG, Baek A, Han H, Lee JI, '''Lee I**''', Lee DR**. An integrated systems biology approach identifies positive cofactor 4 as a factor that increases reprogramming efficiency.'''''Nucleic Acids Research'''''  2016 Feb 18; 44(3):1203-15.[http://www.ncbi.nlm.nih.gov/pubmed/26740582 pubmed]&lt;br /&gt;
*52. Kim E*, Hwang S, Kim H, Shim H, Kang B, Yang S, Shim JH, Shin SY, Marcotte EM, '''Lee I**'''. MouseNet v2: A database of gene networks for studying the laboratory mouse and eight other model vertebrates,'''''Nucleic Acids Research''''' 2016 Jan 4;44(D1):D848-54.[http://www.ncbi.nlm.nih.gov/pubmed/26527726 pubmed]&lt;br /&gt;
&lt;br /&gt;
==2015 (14)==&lt;br /&gt;
*51. Hwang S*, Kim E*, '''Lee I**''', Marcotte EM**, Systematic comparison of variant calling pipelines using gold standard personal exome variants, '''''Scientific Reports''''' 2015 Dec 5:17875 [http://www.ncbi.nlm.nih.gov/pubmed/?term=26639839 pubmed]&lt;br /&gt;
*50. Shin J*, '''Lee I**''', Co-Inheritance Analysis within the Domains of Life Substantially Improves Network Inference by Phylogenetic Profiling, '''''Plos One''''' 2015 Sep 22;10(9):e0139006  [http://www.ncbi.nlm.nih.gov/pubmed/26394049 pubmed]&lt;br /&gt;
*49. Shim JE*, '''Lee I**''', Network-assisted approaches for human disease research, '''''Animal Cells and Systems''''' 2015 Aug 19(4):231-235 [http://www.tandfonline.com/doi/abs/10.1080/19768354.2015.1074108 Link]  [[media:19768354.2015.1074108.pdf|pdf]]&lt;br /&gt;
*48. Lee T*, Oh T, Yang S, Shin J, Hwang S, Kim CY, Kim H, Shim H, Shim JE, Ronald PC**, '''Lee I**''', RiceNet v2: an improved network prioritization server for rice genes, '''''Nucleic Acids Research''''' 2015 Jul 1;43(W1):W122-7 [http://www.ncbi.nlm.nih.gov/pubmed/25813048 pubmed]&lt;br /&gt;
*47. Shin J*, Yang S, Kim E, Kim CY, Shim H, Cho A, Kim H, Hwang S, Shim JE, '''Lee I**''', FlyNet: a versatile network prioritization server for the Drosophila community, '''''Nucleic Acids Research''''' 2015 Jul 1;43(W1):W91-7 [http://www.ncbi.nlm.nih.gov/pubmed/25943544 pubmed]&lt;br /&gt;
*46. Shim JE*, Hwang S, '''Lee I**''', Pathway-Dependent Effectiveness of Network Algorithms for Gene Prioritization, '''''PLoS One''''' 2015 Jun 19;10(6):e0130589. [http://www.ncbi.nlm.nih.gov/pubmed/26091506 pubmed]&lt;br /&gt;
*45. Han H*, Shim H, Shin D, Shim JE, Ko Y, Shin J, Kim H, Cho A, Kim E, Lee T, Kim H, Kim K, Yang S, Bae D, Yun A, Kim S, Kim CY, Cho HJ, Kang B, Shin S, '''Lee I**''', TRRUST: a reference database of human transcriptional regulatory interactions, '''''Scientific Reports''''' 2015 Jun 12;5:11432 [http://www.ncbi.nlm.nih.gov/pubmed/26066708 pubmed]&lt;br /&gt;
*44. '''Lee I**''', Mockler TC**, Editorial overview: Genome studies and molecular genetics: data-driven approaches to genotype-to-phenotype studies in crops, '''''Current Opinion in Plant Biology'''''  2015 Apr;24:iv-vi [http://www.ncbi.nlm.nih.gov/pubmed/25817324 pubmed]&lt;br /&gt;
*43. '''Lee I**''', Kim E, Marcotte EM**, Modes of Interaction between Individuals Dominate the Topologies of Real World Networks, '''''Plos One''''' 2015 Mar 20;10(3):e0121248 [http://www.ncbi.nlm.nih.gov/pubmed/25793969 Pubmed]&lt;br /&gt;
*42. Kim H*, Jung KW*, Maeng S, Chen YL, Shin J, Shim JE, Hwang S, Janbon G, Kim T, Heitman J, Bahn YS**, '''Lee I**''', Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans, '''''Scientific Reports''''' 2015 Mar 5;5:8767 [http://www.ncbi.nlm.nih.gov/pubmed/25739925 Pubmed]&amp;lt;br /&amp;gt;This paper was recommended by Faculty of 1000 Biology.&lt;br /&gt;
*41. Lee T*, Kim H, '''Lee I**''', Network-assisted crop systems genetics: network inference and integrative analysis, '''''Current Opinion in Plant Biology''''' 2015 Mar 5;5:8767. [http://www.ncbi.nlm.nih.gov/pubmed/25698380 Pubmed]&lt;br /&gt;
*40. Kim T*, Dreher K, Nilo-Poyanco R, '''Lee I''', Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY**, Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis thaliana using a genome-scale metabolic network, '''''Plant Physiology''''' 2015 Apr;167(4):1685-98 [http://www.ncbi.nlm.nih.gov/pubmed/25670818 Pubmed]&lt;br /&gt;
*39. Kim H*, Shim JE, Shin J, '''Lee I**''', EcoliNet: a database of cofunctional gene network for Escherichia coli, '''''Database''''' 2015 Feb 2;2015:bav001 [http://www.ncbi.nlm.nih.gov/pubmed/25650278 Pubmed]&lt;br /&gt;
*38. Lee T*, Yang S, Kim E, Ko Y, Hwang S, Shin J, Shim JE, Shim H, Kim H, Kim C, '''Lee I**''', AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species, '''''Nucleic Acids Research''''' 2015 Jan;43(Database issue):D996-1002 [http://www.ncbi.nlm.nih.gov/pubmed/25355510 Pubmed]&lt;br /&gt;
&lt;br /&gt;
==2014 (5)-Sabbatical leave==&lt;br /&gt;
*37. Hwang S*, Kim E, Yang S, Marcotte EM*, '''Lee I**''', MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network, '''''Nucleic Acids Res''''' 2014 Jul;42(Web server issue):W147-53. [http://www.ncbi.nlm.nih.gov/pubmed/24861622 Pubmed]&lt;br /&gt;
*36. '''Lee I**''', A showcase of future plant biology: moving towards next-generation plant genetics assisted by genome sequencing and systems biology, '''''Genome Biology''''', 2014 May 23;15(5):305. [http://www.ncbi.nlm.nih.gov/pubmed/25001400 Pubmed]&lt;br /&gt;
*35. Cho A*, Shin J, Hwang S, Kim C, Shim H, Kim H, Kim H, '''Lee I**'''  WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans, '''''Nucleic Acids Res'''''. 2014 Jul;42(Web Server issue):W76-82 [http://www.ncbi.nlm.nih.gov/pubmed/24813450 Pubmed]&lt;br /&gt;
*34. Shin J*, Lee T, Kim H, '''Lee I**''', Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction. '''''Mol. BioSyst.''''', 2014 Jan;10(1):24-9 [http://www.ncbi.nlm.nih.gov/pubmed/24194096 Pubmed]&lt;br /&gt;
*33. Kim H*, Shin J, Kim E, Kim H, Hwang S, Shim JE, '''Lee I**''', YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae. '''''Nucleic Acids Research''''' 2014 Jan;42(Database issue):D731-6 [http://www.ncbi.nlm.nih.gov/pubmed/24165882 Pubmed]&lt;br /&gt;
&lt;br /&gt;
==2013 (2)==&lt;br /&gt;
*32. Kim E*, Kim H, '''Lee I**''', JiffyNet: a web-based instant protein network modeler for newly sequenced species. '''''Nucleic Acids Research''''' 2013 Jul;41(Web Server issue):W192-7  [http://www.ncbi.nlm.nih.gov/pubmed/23685435 Pubmed][http://nar.oxfordjournals.org/content/early/2013/05/17/nar.gkt419.full.pdf+html pdf]&lt;br /&gt;
*31. '''Lee I**''' , Network approaches to the genetic dissection of phenotypes in animals and humans. '''''Animal Cells and Systems''''' 2013 17(2)75-79 [http://www.tandfonline.com/doi/abs/10.1080/19768354.2013.789076 Link]&lt;br /&gt;
&lt;br /&gt;
==2012 (3)==&lt;br /&gt;
*30. Wang PI*, Hwang S*, Kincaid RP, Sullivan CS, '''Lee I**''', Marcotte EM**. RIDDLE: Reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network. '''''Genome Biology''''' 2012 Dec 26;13(12):R125 [http://www.ncbi.nlm.nih.gov/pubmed/23268829 pubmed]  &lt;br /&gt;
*29. Chae L**, '''Lee I**''', Shin J, Rhee SY**. Towards understanding how molecular networks evolve in plant. '''''Current Opinion in Plant Biology'''''  2012 Apr;15(2):177-84 [http://www.ncbi.nlm.nih.gov/pubmed/22280840 pubmed]  [[media:CurrOpinPlantBiol 15-177.pdf|pdf]]&lt;br /&gt;
*28. Quanbeck SM1*, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, '''Lee I''', Cortes D, Salazar C, Shuman J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ**. Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. '''''Frontiers in Plant Science''''' 2012 Feb 10;3:15  [http://www.ncbi.nlm.nih.gov/pubmed/22645570/ pubmed][[media:Fpls-03-00015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2011 (5)==&lt;br /&gt;
*27.'''Lee I**''', Seo YS, Coltrane D, Hwang S, Oh T, Marcotte EM**, Ronald PC**. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. '''''PNAS''''' 2011 Nov 8;108(45):18548-53  [http://www.ncbi.nlm.nih.gov/pubmed/22042862 pubmed]  [[media:PNAS-2011-Lee-18548-53.pdf|pdf]]&lt;br /&gt;
*26. Hwang S*, Rhee SY**, Marcotte EM**, '''Lee I**'''. Systematic prediction of candidate gene function associated to phenotype traits using the probabilistic functional gene network of Arabidopsis thaliana. '''''Nature Protocols''''' 2011 Aug 25;6(9):1429-42 [http://www.ncbi.nlm.nih.gov/pubmed/21886106 pubmed][[media:2011.08.25.online.nprot.2011.372.pdf|pdf]]&lt;br /&gt;
*25. '''Lee I**''' , Probabilistic functional gene societies. '''''Progress in Biophysics and Molecular Biology''''' 2011 Aug;106(2):435-42  [http://www.ncbi.nlm.nih.gov/pubmed/21281658 pubmed] [[media:Publications_023_n.pdf|pdf]]&lt;br /&gt;
*24. '''Lee I**''', Blom UM*, Wang PI, Shim JE, Marcotte EM**. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. '''''Genome Research''''' 2011 Jul;21(7):1109-21  [http://www.ncbi.nlm.nih.gov/pubmed/21536720 pubmed] [[media:Publications_025_n.pdf|pdf]]&lt;br /&gt;
*23. Seo YS*, Chern M, Bartley LE, Han M, Jung KH, '''Lee I''', Walia H, Richter T, Xu X, Cao P, Bai W, Ramanan R, Amonpant F, Arul L, Canlas PE, Ruan R, Park CJ, Chen X, Hwang S, Jeon JS, Ronald PC**. Towards establishment of a rice stress response interactome. '''''PLoS Genetics''''' 2011 Apr;7(4):e1002020  [http://www.ncbi.nlm.nih.gov/pubmed/21533176 pubmed] [[media:Publications_024.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2010 (4)==&lt;br /&gt;
*22. Huang N*, '''Lee I''', Marcotte EM, Hurles ME**. Characterising and predicting haploinsufficiency in the human genome, '''''PLoS Genet.''''' 2010 Oct 14;6(10):e1001154  [http://www.ncbi.nlm.nih.gov/pubmed/20976243 pubmed]  [[media:Publications_022.pdf|pdf]]&lt;br /&gt;
*21. Kim E*, Shin J, '''Lee I**'''. Assessment of effectiveness of the network-guided genetic screen, '''''Mol Biosyst.''''' 2010 Oct;6(10):1803-6  [http://www.ncbi.nlm.nih.gov/pubmed/20697632 pubmed]  [[media:Publications_021.pdf|pdf]]&lt;br /&gt;
*20. '''Lee I**''', Lehner B**, Vavouri T, Shin J, Fraser AG**, Marcotte EM**. Andrew G. Fraser, and Edward M. Marcotte, Predicting genetic modifier loci using functional gene networks, '''''Genome Research'''''  2010 Aug;20(8):1143-53  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20538624 pubmed]  [[media:Publications_020.pdf|pdf]]&lt;br /&gt;
*19. '''Lee I**''', Ambaru B, Thakkar P, Marcotte EM**, Rhee SY**. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana '''''Nature Biotechnology''''', 2010 Feb;28(2):149-56  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20118918 pubmed]  [[media:Publications_019.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2009 (3)==&lt;br /&gt;
*18. '''Lee I*''', Marcotte EM**.  Effects of functional bias on supervised learning of a gene network model. '''In Methods in Molecular Biology''' Vol. 541, Computational Systems Biology (ed. R. Ireton, K. Montgomery, J. McDermott, R. Samudrala, R. Bumgarner).  Totowa, THE HUMANA.  2009;541:463-75  [http://www.ncbi.nlm.nih.gov/pubmed/19381535 pubmed]  [[media:Publications_018.pdf|pdf]]&lt;br /&gt;
*17. Li Z*, '''Lee I''', Moradi E, Hung NJ, Johnson AW, Marcotte EM**.  Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, '''''PLoS Biology''''', 2009 Oct;7(10):e1000213  [http://www.ncbi.nlm.nih.gov/pubmed/19806183 pubmed]  [[media:Publications_017.pdf|pdf]]&lt;br /&gt;
*16. Gray RS*, Abitua PB, Wlodarczyk BJ, Szabo-Rogers HL, Blanchard O, '''Lee I''', Weiss GS, Liu KJ, Marcotte EM**, Wallingford JB**, Finnell RH**.  The planar cell polarity effector protein Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, '''''Nature Cell Biology''''' 2009 Oct;11(10):1225-32 '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/19767740 pubmed]  [[media:Publications_016.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2008 (3)==&lt;br /&gt;
*15. Lehner B**, '''Lee I**''' .  Network-guided genetic screening: building, testing, and using gene networks to predict gene function.  '''''Brief. Funct. Genomic'''''. 2008 May;7(3):217-27  '''''co-corresponding author'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18445637 pubmed]  [[media:Publications_015.pdf|pdf]]&lt;br /&gt;
*14. '''Lee I*''', Marcotte EM**.   Integrating Functional Genomics Data. '''In Methods in Molecular Biology''' Vol. 453, Bioinformatics Vol. II (ed. Jonathan Keith).  Totowa, THE HUMANA.  2008;453:267-78  [http://www.ncbi.nlm.nih.gov/pubmed/18712309 pubmed]  [[media:Publications_014.pdf|pdf]]&lt;br /&gt;
*13. '''Lee I*''', Lehner B*, Crombie C, Wong W, Fraser AG**, Marcotte EM**. A single gene network accurately predicts phenotypic effects of gene perturbation in ''Caenorhabditis elegans''.  '''''Nature Genetics''''' 2008 Feb;40(2):181-8 '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18223650 pubmed]  [[media:Publications_013.pdf|pdf]]&amp;lt;br /&amp;gt;This paper was the subject of the following commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and minireviews (Von Stetina S. E. and Mango S. E.  Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226.  Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model.  BioEssays 30:707)&lt;br /&gt;
&lt;br /&gt;
==Before 2007 (12)==&lt;br /&gt;
*12. '''Insuk Lee*''', Rammohan Narayanaswamy, Edward Marcotte**.  Bioinformatic prediction of yeast gene function.  '''In METHOD IN MICROBIOLOGY''' Vol. 36, Yeast Gene Analysis (ed. Ian Stansfield and Mike Stark), Elsevier.  p597-628, (2007)  [[media:Publications_012.pdf|pdf]]&lt;br /&gt;
*11. Kris McGary*, '''Insuk Lee''', Edward M. Marcotte**.  Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes.  '''''Genome Biology''''' 8:R258 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/18053250 pubmed]  [[media:Publications_011.pdf|pdf]]&lt;br /&gt;
*10. '''Insuk Lee*''', Zhihua Li, and Edward M. Marcotte**.  An improved bias-reduced probabilistic functional gene network of baker’s yeast ''Saccharomyces cerevisiae''.  '''''PLOS One''''' 2:e988 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17912365 pubmed]  [[media:Publications_010.pdf|pdf]]&lt;br /&gt;
*9. Hart G. Traver*, '''Insuk Lee''', Edward Marcotte**.  A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. '''''BMC Bioinformatic''''' 8:236 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17605818  pubmed]  [[media:Publications_009.pdf|pdf]]&lt;br /&gt;
*8. Insuk Lee*, Shailesh V. Date, Alex T. Adai, Edward Marcotte**.  A Probabilistic functional network of yeast genes. '''''Science''''' 306:1555-1558, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15567862 pubmed]  [[media:Publications_008.pdf|pdf]]&lt;br /&gt;
*7. Bork, P.**, Jensen, L.J., Von Mering, C., Ramani, A.K., '''Lee I''', Marcotte, E.M.** Protein interaction networks from yeast to human.  '''''Curr. Opin. Struct. Biol.''''' 14:292-9, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15193308 pubmed]  [[media:Publications_007.pdf|pdf]]&lt;br /&gt;
*6. '''Insuk Lee*''' and Rasika Harshey**. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. '''''Nucleic Acids Res.''''' 31:4531-4540, (2003)&lt;br /&gt;
*5. '''Insuk Lee*''' and Rasika Harshey**.  The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. '''''J. Mol. Biol.'''''  330:261-275, (2003)&lt;br /&gt;
*4. '''Insuk Lee*''' and Rasika Harshey**.  Importance of the conserved CA dinucleotide at Mu termini. '''''J. Mol. Biol.'''''  314:433-444, (2001)&lt;br /&gt;
*3. Xue, Y*., Bai, X., '''Lee, I.''', Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W.** Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. '''''Mol. Cell. Biol.''''' 20:4006-4015, (2000)&lt;br /&gt;
*2. Liu, J*., Gong, Y., Prakash, O., Wen, L., '''Lee, I'''., Huang J.,-K., and Krishnamoorthi, R.**  NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family.  '''''Protein Science'''''  7:132-141, (1998) &lt;br /&gt;
*1. Wen, L.**, '''Lee, I.''', Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R.  Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. '''''Biochem. Biophys. Res. Commun.''''' 207:897-902, (1995)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=4242</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=4242"/>
		<updated>2017-02-10T00:53:29Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2017&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; |Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/02/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//pubmed.gov/27851969 Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2017/02/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://biorxiv.org/content/early/2016/12/30/097451 Convergence of dispersed regulatory mutations predicts driver genes in prostate cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//pubmed.gov/27723759 Chromatin structure-based prediction of recurrent noncoding mutations in cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2017/02/07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://biorxiv.org/content/early/2016/11/17/088286 Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://biorxiv.org/content/early/2016/11/28/090134 Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/01/31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/27912059 Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/01/24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JW Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/27851914 Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2017/01/17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/25938943 Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/27306882 CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/01/10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/26527291 ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/01/03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|SH Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/26287467 Single-cell messenger RNA sequencing reveals rare intestinal cell types]&lt;br /&gt;
|-&lt;br /&gt;
|}&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2016&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; |Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/12/27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25664528 Decoding the regulatory network of early blood development from single-cell gene expression measurements.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/12/6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26299571 Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24658644 The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26887813 Classification of low quality cells from single-cell RNA-seq data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26000487 Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JW Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26000488 Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27426982 Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/10/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27549193 Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/10/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=sidespread+parainflammation Widespread parainflammation in human cancer]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27535533 Analysis of protein-coding genetic variation in 60,706 humans]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|SM Yang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
Functional characterization of somatic mutations in cancer using network-based inference of protein activity&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27322546 pubmed]&lt;br /&gt;
[http://www.nature.com/ng/journal/v48/n8/full/ng.3593.html fulltext]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=exploiting+single-cell+expression+to+characterize Exploiting single-cell expression to characterize co-expression replicability.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26940869 Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27264179 A Computational Drug Repositioning Approach for Targeting Oncogenic Transcription Factors]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JW Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27309802 The landscape of accessible chromatin in mammalian preimplantation embryos]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27064255 Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27040498 Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/7/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=integration+of+summary+data+from+gwas+and+eqtl+studies Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/7/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23624555 Identification of transcriptional regulators in the mouse immune system]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/6/8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26619012 Mapping the effects of drugs on the immune system]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26186195 Elucidating compound mechanism of action by network perturbation analysis]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/6/1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26854917 Integrative approaches for large-scale transcriptome-wide association studies]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-9&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26950747 Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/5/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim,SJ Kwon&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27013732 Survey of variation in human transcription factors reveals prevalent DNA binding changes]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-7&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| CY Kim,SJ Kwon &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26502339  Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/5/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25171417 Predicting Cancer-specific vulnerability via data-driven detection of synthetic lethality]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-5&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23467089 Dynamic regulatory network controlling Th17 cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/5/4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25853550 Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-3&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26618344  Regulators of genetic risk of breast cancer identified by integrative network analysis]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/4/27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-2&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim,SJ Kwon&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26780608 A predictive computational framework for direct reprogramming between human cell types]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| CY Kim,SJ Kwon &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25126793 CellNet: Network biology applied to stem cell engineering]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2015&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/06/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-55&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/24/2/340.long Improved exome prioritization of disease genes through cross-species phenotype comparison.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-54&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0002929714001128 Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/06/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-53&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2656.html eXtasy: variant prioritization by genomic data fusion.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-52&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/21/9/1529.long A probabilistic disease-gene finder for personal genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/05/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-51&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n12/full/ng.3141.html Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-50&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/v28/n5/full/nbt.1630.html GREAT improves functional interpretation of cis-regulatory regions.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/05/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-49&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2832.html Functional annotation of noncoding sequence variants.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-48&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/15/10/480 FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/05/14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-47&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v12/n2/full/nmeth.3215.html Selecting causal genes from genome-wide association studies via functionally coherent subnetworks.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-46&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ncomms/2015/150119/ncomms6890/full/ncomms6890.html Biological interpretation of genome-wide association studies using predicted gene functions.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/05/07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-45&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ncomms/2014/140626/ncomms5212/full/ncomms5212.html Human symptoms-disease network.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-44&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867413010246 A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-43&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/347/6224/1257601.long Uncovering disease-disease relationships through the incomplete interactome.]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/04/30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-42&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/1/142.long The discovery of integrated gene networks for autism and related disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-41&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/10/12/774.long Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/04/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-40&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v518/n7539/full/nature13990.html Dissecting neural differentiation regulatory networks through epigenetic footprinting.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-39&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v518/n7539/full/nature14221.html Cell-of-origin chromatin organization shapes the mutational landscape of cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-38&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v518/n7539/full/nature14248.html Integrative analysis of 111 reference human epigenomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/04/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-37&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/2/246.long Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-36&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414014974 A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/04/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-35&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nrg/journal/v14/n6/full/nrg3454.html Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-34&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/347/6225/1010.long Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/03/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-33&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/2/257.long Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-32&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/1/41.long Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/03/19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3154.html Decoding the regulatory network of early blood development from single-cell gene expression measurements.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nrg/journal/v16/n3/full/nrg3833.html Computational and analytical challenges in single-cell transcriptomics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/03/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867415000136 Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v500/n7464/full/nature12506.html Richness of human gut microbiome correlates with metabolic markers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v490/n7418/full/nature11450.html A metagenome-wide association study of gut microbiota in type 2 diabetes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/03/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326 Practical guidelines for the comprehensive analysis of ChIP-seq data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/23/5/777.long Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/10/11/760.long Rapid neurogenesis through transcriptional activation in human stem cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/03/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414011787 Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004237 Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v45/n6/full/ng.2653.html The Genotype-Tissue Expression (GTEx) project.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/02/24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/346/6212/1007.long Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v515/n7527/full/nature13985.html Principles of regulatory information conservation between mouse and human.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v515/n7527/full/nature13972.html Conservation of trans-acting circuitry during mammalian regulatory evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/02/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13835.html Genetic and epigenetic fine mapping of causal autoimmune disease variants.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n3/full/ng.2892.html A general framework for estimating the relative pathogenicity of human genetic variants.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003825 A probabilistic model to predict clinical phenotypic traits from genome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=4|2015/02/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.pnas.org/content/111/22/E2329.long Relating the metatranscriptome and metagenome of the human gut.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v513/n7516/full/nature13568.html Alterations of the human gut microbiome in liver cirrhosis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/v32/n8/full/nbt.2942.html An integrated catalog of reference genes in the human gut microbiome.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/v32/n8/full/nbt.2939.html Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=5|2015/01/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/9/1/666.long Computational meta'omics for microbial community studies.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/5/7/65 Functional profiling of the gut microbiome in disease-associated inflammation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S016895251200145X Biodiversity and functional genomics in the human microbiome.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002808 Chapter 12: Human Microbiome Analysis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.cell.com/cell/abstract/S0092-8674%2814%2900864-2 Conducting a Microbiome Study.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/01/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ncomms/2014/141210/ncomms6522/full/ncomms6522.html Small RNA changes en route to distinct cellular states of induced pluripotency.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v516/n7530/full/nature14046.html Genome-wide characterization of the routes to pluripotency.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v516/n7530/full/nature14047.html Divergent reprogramming routes lead to alternative stem-cell states.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/01/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.pnas.org/content/111/21/E2191.long Global view of enhancer-promoter interactome in human cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://nar.oxfordjournals.org/content/41/22/10391.long Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.]&lt;br /&gt;
|}&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2014&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/12/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-41&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867413012270 Super-enhancers in the control of cell identity and disease.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-40&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867413003929 Master transcription factors and mediator establish super-enhancers at key cell identity genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=4|2014/12/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-39&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414013713 Unraveling the biology of a fungal meningitis pathogen using chemical genetics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-38&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414014226 A proteome-scale map of the human interactome network.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-37&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/10/9/752.long The role of the interactome in the maintenance of deleterious variability in human populations.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-36&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/342/6154/1235587.long Integrative annotation of variants from 1092 humans: application to cancer genomics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/12/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-35&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/23/8/1319.long Mapping functional transcription factor networks from gene expression data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-34&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nrg/journal/v15/n7/full/nrg3684.html In pursuit of design principles of regulatory sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-33&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/3/6/36 Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-32&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S009286741300891X Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|SM Yang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/6/8/64 The 'dnet' approach promotes emerging research on cancer patient survival.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414010368 Determination and inference of eukaryotic transcription factor sequence specificity.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/11/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.pnas.org/content/110/16/6412.long Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009350 Dissecting engineered cell types and enhancing cell fate conversion via CellNet.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009349 CellNet: network biology applied to stem cell engineering.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009775 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JH Shin&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n9/full/nmeth.3046.html Phen-Gen: combining phenotype and genotype to analyze rare disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/10/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n9/full/ng.3051.html Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2651.html Network-based stratification of tumor mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414001457 Synonymous mutations frequently act as driver mutations in human cancers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003460 VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/13/12/R124 DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JH Shin&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/14/5/R52 Integrated analysis of recurrent properties of cancer genes to identify novel drivers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/4/11/89 Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=23228031 A network module-based method for identifying cancer prognostic signatures.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24429628 Realizing the promise of cancer predisposition genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24952901 Assessing the clinical utility of cancer genomic and proteomic data across tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24132290 Mutational landscape and significance across 12 major cancer types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23945592 Signatures of mutational processes in human cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24390350 Discovery and saturation analysis of cancer genes across 21 tumour types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24084849 Comprehensive identification of mutational cancer driver genes across 12 tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-9&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24037244 IntOGen-mutations identifies cancer drivers across tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/07/29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23900255 Computational approaches to identify functional genetic variants in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-7&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=23770567 Mutational heterogeneity in cancer and the search for new cancer-associated genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n4/abs/nmeth.2891.html Cancer genomes: discerning drivers from passengers]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/07/22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-5&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24071849 The Cancer Genome Atlas Pan-Cancer analysis project.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23539594 Cancer genome landscapes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-3&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=21900272 Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/07/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-2&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24670764 A promoter-level mammalian expression atlas.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24670763 An atlas of active enhancers across human cell types and tissues.]&lt;br /&gt;
|}&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2013&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/06/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://nar.oxfordjournals.org/content/40/16/7690.long Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|YH Ko&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v31/n4/full/nbt.2519.html Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/06/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[https://www.cell.com/abstract/S0092-8674(13)00439-X Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v31/n3/full/nbt.2514.html Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|YH Ko&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.pnas.org/content/102/38/13544.long Discovering statistically significant pathways in expression profiling studies]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0058977 Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v496/n7446/full/nature11981.html Dynamic regulatory network controlling TH17 cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|'''2013/05/07'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; |2013/03/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/03/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| JE Shim, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html  Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim, CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/01/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, '''JH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''ER Kim''', HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/01/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim, '''TH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/01/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| '''JE Shim''', CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
2012&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2013/01/11&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2012/12/04&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
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&amp;lt;!--&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=4241</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=4241"/>
		<updated>2017-02-10T00:44:54Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2017&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; |Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/02/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/27851969 Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2017/02/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//biorxiv.org/content/early/2016/12/30/097451 Convergence of dispersed regulatory mutations predicts driver genes in prostate cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/27723759 Chromatin structure-based prediction of recurrent noncoding mutations in cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2017/02/07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//biorxiv.org/content/early/2016/11/17/088286 Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//biorxiv.org/content/early/2016/11/28/090134 Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/01/31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/27912059 Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/01/24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JW Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/27851914 Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2017/01/17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/25938943 Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/27306882 CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/01/10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/26527291 ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2017/01/03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|17-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|SH Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[//www.ncbi.nlm.nih.gov/pubmed/26287467 Single-cell messenger RNA sequencing reveals rare intestinal cell types]&lt;br /&gt;
|-&lt;br /&gt;
|}&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2016&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; |Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/12/27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25664528 Decoding the regulatory network of early blood development from single-cell gene expression measurements.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/12/6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26299571 Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24658644 The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26887813 Classification of low quality cells from single-cell RNA-seq data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26000487 Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JW Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26000488 Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/11/1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27426982 Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/10/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27549193 Comprehensive analyses of tumor immunity: implications for cancer immunotherapy.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/10/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=sidespread+parainflammation Widespread parainflammation in human cancer]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27535533 Analysis of protein-coding genetic variation in 60,706 humans]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|SM Yang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
Functional characterization of somatic mutations in cancer using network-based inference of protein activity&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27322546 pubmed]&lt;br /&gt;
[http://www.nature.com/ng/journal/v48/n8/full/ng.3593.html fulltext]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=exploiting+single-cell+expression+to+characterize Exploiting single-cell expression to characterize co-expression replicability.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26940869 Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27264179 A Computational Drug Repositioning Approach for Targeting Oncogenic Transcription Factors]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JW Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27309802 The landscape of accessible chromatin in mammalian preimplantation embryos]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27064255 Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27040498 Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/7/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=integration+of+summary+data+from+gwas+and+eqtl+studies Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/7/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23624555 Identification of transcriptional regulators in the mouse immune system]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/6/8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26619012 Mapping the effects of drugs on the immune system]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26186195 Elucidating compound mechanism of action by network perturbation analysis]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/6/1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26854917 Integrative approaches for large-scale transcriptome-wide association studies]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-9&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26950747 Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/5/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim,SJ Kwon&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27013732 Survey of variation in human transcription factors reveals prevalent DNA binding changes]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-7&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| CY Kim,SJ Kwon &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26502339  Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/5/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25171417 Predicting Cancer-specific vulnerability via data-driven detection of synthetic lethality]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-5&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23467089 Dynamic regulatory network controlling Th17 cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/5/4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25853550 Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-3&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26618344  Regulators of genetic risk of breast cancer identified by integrative network analysis]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/4/27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-2&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim,SJ Kwon&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26780608 A predictive computational framework for direct reprogramming between human cell types]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| CY Kim,SJ Kwon &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25126793 CellNet: Network biology applied to stem cell engineering]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2015&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/06/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-55&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/24/2/340.long Improved exome prioritization of disease genes through cross-species phenotype comparison.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-54&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0002929714001128 Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/06/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-53&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2656.html eXtasy: variant prioritization by genomic data fusion.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-52&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/21/9/1529.long A probabilistic disease-gene finder for personal genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/05/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-51&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n12/full/ng.3141.html Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-50&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/v28/n5/full/nbt.1630.html GREAT improves functional interpretation of cis-regulatory regions.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/05/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-49&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2832.html Functional annotation of noncoding sequence variants.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-48&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/15/10/480 FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/05/14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-47&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v12/n2/full/nmeth.3215.html Selecting causal genes from genome-wide association studies via functionally coherent subnetworks.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-46&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ncomms/2015/150119/ncomms6890/full/ncomms6890.html Biological interpretation of genome-wide association studies using predicted gene functions.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/05/07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-45&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ncomms/2014/140626/ncomms5212/full/ncomms5212.html Human symptoms-disease network.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-44&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867413010246 A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-43&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/347/6224/1257601.long Uncovering disease-disease relationships through the incomplete interactome.]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/04/30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-42&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/1/142.long The discovery of integrated gene networks for autism and related disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-41&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/10/12/774.long Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/04/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-40&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v518/n7539/full/nature13990.html Dissecting neural differentiation regulatory networks through epigenetic footprinting.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-39&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v518/n7539/full/nature14221.html Cell-of-origin chromatin organization shapes the mutational landscape of cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-38&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v518/n7539/full/nature14248.html Integrative analysis of 111 reference human epigenomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/04/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-37&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/2/246.long Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-36&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414014974 A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/04/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-35&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nrg/journal/v14/n6/full/nrg3454.html Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-34&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/347/6225/1010.long Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/03/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-33&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/2/257.long Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-32&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/1/41.long Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/03/19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3154.html Decoding the regulatory network of early blood development from single-cell gene expression measurements.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nrg/journal/v16/n3/full/nrg3833.html Computational and analytical challenges in single-cell transcriptomics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/03/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867415000136 Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v500/n7464/full/nature12506.html Richness of human gut microbiome correlates with metabolic markers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v490/n7418/full/nature11450.html A metagenome-wide association study of gut microbiota in type 2 diabetes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/03/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326 Practical guidelines for the comprehensive analysis of ChIP-seq data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/23/5/777.long Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/10/11/760.long Rapid neurogenesis through transcriptional activation in human stem cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/03/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414011787 Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004237 Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v45/n6/full/ng.2653.html The Genotype-Tissue Expression (GTEx) project.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/02/24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/346/6212/1007.long Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v515/n7527/full/nature13985.html Principles of regulatory information conservation between mouse and human.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v515/n7527/full/nature13972.html Conservation of trans-acting circuitry during mammalian regulatory evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/02/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13835.html Genetic and epigenetic fine mapping of causal autoimmune disease variants.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n3/full/ng.2892.html A general framework for estimating the relative pathogenicity of human genetic variants.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003825 A probabilistic model to predict clinical phenotypic traits from genome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=4|2015/02/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.pnas.org/content/111/22/E2329.long Relating the metatranscriptome and metagenome of the human gut.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v513/n7516/full/nature13568.html Alterations of the human gut microbiome in liver cirrhosis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/v32/n8/full/nbt.2942.html An integrated catalog of reference genes in the human gut microbiome.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/v32/n8/full/nbt.2939.html Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=5|2015/01/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/9/1/666.long Computational meta'omics for microbial community studies.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/5/7/65 Functional profiling of the gut microbiome in disease-associated inflammation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S016895251200145X Biodiversity and functional genomics in the human microbiome.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002808 Chapter 12: Human Microbiome Analysis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.cell.com/cell/abstract/S0092-8674%2814%2900864-2 Conducting a Microbiome Study.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/01/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ncomms/2014/141210/ncomms6522/full/ncomms6522.html Small RNA changes en route to distinct cellular states of induced pluripotency.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v516/n7530/full/nature14046.html Genome-wide characterization of the routes to pluripotency.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v516/n7530/full/nature14047.html Divergent reprogramming routes lead to alternative stem-cell states.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/01/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.pnas.org/content/111/21/E2191.long Global view of enhancer-promoter interactome in human cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://nar.oxfordjournals.org/content/41/22/10391.long Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.]&lt;br /&gt;
|}&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2014&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/12/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-41&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867413012270 Super-enhancers in the control of cell identity and disease.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-40&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867413003929 Master transcription factors and mediator establish super-enhancers at key cell identity genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=4|2014/12/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-39&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414013713 Unraveling the biology of a fungal meningitis pathogen using chemical genetics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-38&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414014226 A proteome-scale map of the human interactome network.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-37&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/10/9/752.long The role of the interactome in the maintenance of deleterious variability in human populations.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-36&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/342/6154/1235587.long Integrative annotation of variants from 1092 humans: application to cancer genomics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/12/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-35&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/23/8/1319.long Mapping functional transcription factor networks from gene expression data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-34&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nrg/journal/v15/n7/full/nrg3684.html In pursuit of design principles of regulatory sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-33&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/3/6/36 Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-32&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S009286741300891X Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|SM Yang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/6/8/64 The 'dnet' approach promotes emerging research on cancer patient survival.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414010368 Determination and inference of eukaryotic transcription factor sequence specificity.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/11/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.pnas.org/content/110/16/6412.long Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009350 Dissecting engineered cell types and enhancing cell fate conversion via CellNet.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009349 CellNet: network biology applied to stem cell engineering.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009775 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JH Shin&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n9/full/nmeth.3046.html Phen-Gen: combining phenotype and genotype to analyze rare disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/10/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n9/full/ng.3051.html Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2651.html Network-based stratification of tumor mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414001457 Synonymous mutations frequently act as driver mutations in human cancers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003460 VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/13/12/R124 DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JH Shin&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/14/5/R52 Integrated analysis of recurrent properties of cancer genes to identify novel drivers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/4/11/89 Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=23228031 A network module-based method for identifying cancer prognostic signatures.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24429628 Realizing the promise of cancer predisposition genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24952901 Assessing the clinical utility of cancer genomic and proteomic data across tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24132290 Mutational landscape and significance across 12 major cancer types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23945592 Signatures of mutational processes in human cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24390350 Discovery and saturation analysis of cancer genes across 21 tumour types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24084849 Comprehensive identification of mutational cancer driver genes across 12 tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-9&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24037244 IntOGen-mutations identifies cancer drivers across tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/07/29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23900255 Computational approaches to identify functional genetic variants in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-7&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=23770567 Mutational heterogeneity in cancer and the search for new cancer-associated genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n4/abs/nmeth.2891.html Cancer genomes: discerning drivers from passengers]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/07/22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-5&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24071849 The Cancer Genome Atlas Pan-Cancer analysis project.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23539594 Cancer genome landscapes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-3&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=21900272 Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/07/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-2&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24670764 A promoter-level mammalian expression atlas.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24670763 An atlas of active enhancers across human cell types and tissues.]&lt;br /&gt;
|}&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2013&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/06/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://nar.oxfordjournals.org/content/40/16/7690.long Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|YH Ko&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v31/n4/full/nbt.2519.html Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/06/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[https://www.cell.com/abstract/S0092-8674(13)00439-X Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v31/n3/full/nbt.2514.html Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|YH Ko&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.pnas.org/content/102/38/13544.long Discovering statistically significant pathways in expression profiling studies]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0058977 Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v496/n7446/full/nature11981.html Dynamic regulatory network controlling TH17 cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|'''2013/05/07'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; |2013/03/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/03/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| JE Shim, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html  Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim, CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/01/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, '''JH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''ER Kim''', HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/01/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim, '''TH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/01/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| '''JE Shim''', CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
2012&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2013/01/11&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2012/12/04&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
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{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
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|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
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|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Software&amp;diff=4048</id>
		<title>Software</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Software&amp;diff=4048"/>
		<updated>2016-09-28T03:18:00Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
=='''Co-functional networks: Organism-specific network-assisted hypothesis generation servers'''==&lt;br /&gt;
==''Human and Animals''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;800&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:danionet_logo.png|150px|link=http://www.inetbio.org/danionet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:Flynet.png|150px|link=http://www.inetbio.org/flynet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Homo sapiens''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Mus musculus''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Danio rerio''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Drosophila melanogaster''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Caenorhabditis elegans''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Plants''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;500&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Aranet_v2.jpg|150px|link=http://www.inetbio.org/aranet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Soynetlogo.png|150px|link=http://www.inetbio.org/soynet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Arabidopsis thaliana''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Oryza sativa''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Glycine max''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Fungi''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;400&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:CryptoNet.png|150px|link=http://www.inetbio.org/cryptonet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Saccharomyces cerevisiae''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Cryptococcus neoformans''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
==''Bacteria''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;400&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Pseudomonas logo.jpg|150px|link=http://www.inetbio.org/pseudomonasnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Pseudomonas aeruginosa''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Escherichia coli''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)'''==&lt;br /&gt;
[[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] COEXPEDIA is currently available.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''TRRUST: A reference database of human TF-target interactions'''==&lt;br /&gt;
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''MUFFINN: cancer gene discovery via network analysis of somatic mutation data'''==&lt;br /&gt;
[[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] MUFFINN (MUtations For Functional Impact on Network Neighbors).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''MORPHIN: Network-assisted prediction of disease pathways in model organisms'''==&lt;br /&gt;
[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''JiffyNet:Instant gene network building server for newly sequenced species'''==&lt;br /&gt;
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] Jiffy (instant) gene network modeler for newly sequenced species&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''RIDDLE: Network-assisted Gene Set Analysis (human only)'''==&lt;br /&gt;
[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''==&lt;br /&gt;
[[WMI|&amp;lt;big&amp;gt;'''Project Page'''&amp;lt;/big&amp;gt;]]&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=File:Coexpedia.png&amp;diff=4047</id>
		<title>File:Coexpedia.png</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=File:Coexpedia.png&amp;diff=4047"/>
		<updated>2016-09-28T02:23:56Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=3973</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=3973"/>
		<updated>2016-09-01T01:52:38Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2016&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; |Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=sidespread+parainflammation Widespread parainflammation in human cancer]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27535533 Analysis of protein-coding genetic variation in 60,706 humans]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|SM Yang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
Functional characterization of somatic mutations in cancer using network-based inference of protein activity&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27322546 pubmed]&lt;br /&gt;
[http://www.nature.com/ng/journal/v48/n8/full/ng.3593.html fulltext]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=exploiting+single-cell+expression+to+characterize Exploiting single-cell expression to characterize co-expression replicability.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/9/6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26940869 Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27264179 A Computational Drug Repositioning Approach for Targeting Oncogenic Transcription Factors]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JW Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27309802 The landscape of accessible chromatin in mammalian preimplantation embryos]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|EB Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27064255 Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/8/1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27040498 Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/7/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=integration+of+summary+data+from+gwas+and+eqtl+studies Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2016/7/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23624555 Identification of transcriptional regulators in the mouse immune system]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/6/8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26619012 Mapping the effects of drugs on the immune system]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26186195 Elucidating compound mechanism of action by network perturbation analysis]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/6/1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26854917 Integrative approaches for large-scale transcriptome-wide association studies]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-9&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26950747 Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/5/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim,SJ Kwon&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/27013732 Survey of variation in human transcription factors reveals prevalent DNA binding changes]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-7&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| CY Kim,SJ Kwon &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26502339  Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/5/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25171417 Predicting Cancer-specific vulnerability via data-driven detection of synthetic lethality]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-5&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23467089 Dynamic regulatory network controlling Th17 cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/5/4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25853550 Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-3&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|MY Lee,SM Cho &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26618344  Regulators of genetic risk of breast cancer identified by integrative network analysis]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2016/4/27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2016-2&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim,SJ Kwon&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/26780608 A predictive computational framework for direct reprogramming between human cell types]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| 2016-1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| CY Kim,SJ Kwon &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/25126793 CellNet: Network biology applied to stem cell engineering]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2015&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/06/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-55&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/24/2/340.long Improved exome prioritization of disease genes through cross-species phenotype comparison.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-54&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0002929714001128 Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/06/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-53&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2656.html eXtasy: variant prioritization by genomic data fusion.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-52&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/21/9/1529.long A probabilistic disease-gene finder for personal genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/05/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-51&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n12/full/ng.3141.html Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-50&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/v28/n5/full/nbt.1630.html GREAT improves functional interpretation of cis-regulatory regions.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/05/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-49&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n3/full/nmeth.2832.html Functional annotation of noncoding sequence variants.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-48&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/15/10/480 FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/05/14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-47&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v12/n2/full/nmeth.3215.html Selecting causal genes from genome-wide association studies via functionally coherent subnetworks.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-46&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ncomms/2015/150119/ncomms6890/full/ncomms6890.html Biological interpretation of genome-wide association studies using predicted gene functions.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/05/07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-45&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ncomms/2014/140626/ncomms5212/full/ncomms5212.html Human symptoms-disease network.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-44&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867413010246 A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-43&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/347/6224/1257601.long Uncovering disease-disease relationships through the incomplete interactome.]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/04/30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-42&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/1/142.long The discovery of integrated gene networks for autism and related disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-41&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/10/12/774.long Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/04/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-40&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v518/n7539/full/nature13990.html Dissecting neural differentiation regulatory networks through epigenetic footprinting.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-39&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v518/n7539/full/nature14221.html Cell-of-origin chromatin organization shapes the mutational landscape of cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-38&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v518/n7539/full/nature14248.html Integrative analysis of 111 reference human epigenomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/04/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-37&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/2/246.long Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-36&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414014974 A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/04/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-35&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nrg/journal/v14/n6/full/nrg3454.html Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-34&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/347/6225/1010.long Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/03/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-33&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/2/257.long Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-32&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/25/1/41.long Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/03/19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3154.html Decoding the regulatory network of early blood development from single-cell gene expression measurements.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nrg/journal/v16/n3/full/nrg3833.html Computational and analytical challenges in single-cell transcriptomics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/03/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867415000136 Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v500/n7464/full/nature12506.html Richness of human gut microbiome correlates with metabolic markers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v490/n7418/full/nature11450.html A metagenome-wide association study of gut microbiota in type 2 diabetes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/03/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326 Practical guidelines for the comprehensive analysis of ChIP-seq data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/23/5/777.long Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/10/11/760.long Rapid neurogenesis through transcriptional activation in human stem cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/03/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414011787 Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1004237 Integrating multiple genomic data to predict disease-causing nonsynonymous single nucleotide variants in exome sequencing studies.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v45/n6/full/ng.2653.html The Genotype-Tissue Expression (GTEx) project.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/02/24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/346/6212/1007.long Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v515/n7527/full/nature13985.html Principles of regulatory information conservation between mouse and human.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v515/n7527/full/nature13972.html Conservation of trans-acting circuitry during mammalian regulatory evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/02/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13835.html Genetic and epigenetic fine mapping of causal autoimmune disease variants.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n3/full/ng.2892.html A general framework for estimating the relative pathogenicity of human genetic variants.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003825 A probabilistic model to predict clinical phenotypic traits from genome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=4|2015/02/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.pnas.org/content/111/22/E2329.long Relating the metatranscriptome and metagenome of the human gut.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v513/n7516/full/nature13568.html Alterations of the human gut microbiome in liver cirrhosis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/v32/n8/full/nbt.2942.html An integrated catalog of reference genes in the human gut microbiome.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/v32/n8/full/nbt.2939.html Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=5|2015/01/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/9/1/666.long Computational meta'omics for microbial community studies.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/5/7/65 Functional profiling of the gut microbiome in disease-associated inflammation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S016895251200145X Biodiversity and functional genomics in the human microbiome.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002808 Chapter 12: Human Microbiome Analysis.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|BH Kang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.cell.com/cell/abstract/S0092-8674%2814%2900864-2 Conducting a Microbiome Study.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2015/01/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ncomms/2014/141210/ncomms6522/full/ncomms6522.html Small RNA changes en route to distinct cellular states of induced pluripotency.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v516/n7530/full/nature14046.html Genome-wide characterization of the routes to pluripotency.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nature/journal/v516/n7530/full/nature14047.html Divergent reprogramming routes lead to alternative stem-cell states.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2015/01/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.pnas.org/content/111/21/E2191.long Global view of enhancer-promoter interactome in human cells.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2015-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://nar.oxfordjournals.org/content/41/22/10391.long Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome.]&lt;br /&gt;
|}&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2014&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/12/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-41&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867413012270 Super-enhancers in the control of cell identity and disease.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-40&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867413003929 Master transcription factors and mediator establish super-enhancers at key cell identity genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=4|2014/12/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-39&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414013713 Unraveling the biology of a fungal meningitis pathogen using chemical genetics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-38&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414014226 A proteome-scale map of the human interactome network.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-37&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://msb.embopress.org/content/10/9/752.long The role of the interactome in the maintenance of deleterious variability in human populations.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-36&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencemag.org/content/342/6154/1235587.long Integrative annotation of variants from 1092 humans: application to cancer genomics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/12/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-35&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genome.cshlp.org/content/23/8/1319.long Mapping functional transcription factor networks from gene expression data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-34&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nrg/journal/v15/n7/full/nrg3684.html In pursuit of design principles of regulatory sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-33&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/3/6/36 Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-32&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S009286741300891X Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|SM Yang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/6/8/64 The 'dnet' approach promotes emerging research on cancer patient survival.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414010368 Determination and inference of eukaryotic transcription factor sequence specificity.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/11/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|DS Bae&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.pnas.org/content/110/16/6412.long Transcription factors interfering with dedifferentiation induce cell type-specific transcriptional profiles.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009350 Dissecting engineered cell types and enhancing cell fate conversion via CellNet.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009349 CellNet: network biology applied to stem cell engineering.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009775 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JH Shin&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n9/full/nmeth.3046.html Phen-Gen: combining phenotype and genotype to analyze rare disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/10/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n9/full/ng.3051.html Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2651.html Network-based stratification of tumor mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414001457 Synonymous mutations frequently act as driver mutations in human cancers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003460 VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/13/12/R124 DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JH Shin&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/14/5/R52 Integrated analysis of recurrent properties of cancer genes to identify novel drivers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/4/11/89 Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=23228031 A network module-based method for identifying cancer prognostic signatures.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24429628 Realizing the promise of cancer predisposition genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24952901 Assessing the clinical utility of cancer genomic and proteomic data across tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24132290 Mutational landscape and significance across 12 major cancer types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23945592 Signatures of mutational processes in human cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24390350 Discovery and saturation analysis of cancer genes across 21 tumour types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24084849 Comprehensive identification of mutational cancer driver genes across 12 tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-9&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24037244 IntOGen-mutations identifies cancer drivers across tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/07/29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23900255 Computational approaches to identify functional genetic variants in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-7&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=23770567 Mutational heterogeneity in cancer and the search for new cancer-associated genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n4/abs/nmeth.2891.html Cancer genomes: discerning drivers from passengers]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/07/22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-5&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24071849 The Cancer Genome Atlas Pan-Cancer analysis project.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23539594 Cancer genome landscapes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-3&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=21900272 Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/07/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-2&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24670764 A promoter-level mammalian expression atlas.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24670763 An atlas of active enhancers across human cell types and tissues.]&lt;br /&gt;
|}&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2013&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/06/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://nar.oxfordjournals.org/content/40/16/7690.long Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|YH Ko&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v31/n4/full/nbt.2519.html Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/06/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[https://www.cell.com/abstract/S0092-8674(13)00439-X Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v31/n3/full/nbt.2514.html Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|YH Ko&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.pnas.org/content/102/38/13544.long Discovering statistically significant pathways in expression profiling studies]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0058977 Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v496/n7446/full/nature11981.html Dynamic regulatory network controlling TH17 cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|'''2013/05/07'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; |2013/03/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/03/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| JE Shim, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html  Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim, CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/01/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, '''JH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''ER Kim''', HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/01/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim, '''TH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/01/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| '''JE Shim''', CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
2012&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2013/01/11&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2012/12/04&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
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{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
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|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
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|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
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|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
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|-&lt;br /&gt;
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|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
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|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Welcome_to_Network_Biology_Laboratory&amp;diff=3616</id>
		<title>Welcome to Network Biology Laboratory</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Welcome_to_Network_Biology_Laboratory&amp;diff=3616"/>
		<updated>2015-10-05T05:41:48Z</updated>

		<summary type="html">&lt;p&gt;Smyang: /* Oral Presentation */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
&lt;br /&gt;
{|border = &amp;quot;0&amp;quot; valign=&amp;quot;top&amp;quot;&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot; style=&amp;quot;padding-right:20px;&amp;quot;|&lt;br /&gt;
[[File :Groupphoto_20150601_5.jpeg|580px|center|middle|Main Photo]]&lt;br /&gt;
&lt;br /&gt;
|colspan=2|&lt;br /&gt;
=== Research Keyword Cloud ===&lt;br /&gt;
&amp;lt;div&amp;gt;{{#widget:AddHtml|content=&amp;lt;img src=&amp;quot;cloud.jpg&amp;quot; alt=&amp;quot;Word Cloud from Abstraction below publications&amp;quot;  title=&amp;quot;Word Cloud of NBL Publications' Abstract&amp;quot; /&amp;gt;}}&amp;lt;/div&amp;gt;&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
=== Oral Presentation ===&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;width:65px&amp;quot;| JE Shim&lt;br /&gt;
|style=&amp;quot;width:65px&amp;quot;| T Lee&lt;br /&gt;
|style=&amp;quot;width:65px&amp;quot;| HJ Han&lt;br /&gt;
|-&lt;br /&gt;
| KS Kim*&lt;br /&gt;
| ER Kim&lt;br /&gt;
| CY Kim&lt;br /&gt;
|-&lt;br /&gt;
| DS Bae&lt;br /&gt;
| SM Yang&lt;br /&gt;
|&lt;br /&gt;
|}&lt;br /&gt;
|&lt;br /&gt;
&lt;br /&gt;
=== Visitors Trend ===&lt;br /&gt;
[http://www2.clustrmaps.com/user/563d3fa7 http://www2.clustrmaps.com/stats/maps-no_clusters/www.netbiolab.org-thumb.jpg]&lt;br /&gt;
|-&lt;br /&gt;
|colspan=3|&lt;br /&gt;
===Contact Informations===&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Yonsei University 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749, Korea &lt;br /&gt;
Office: Engineering Research Park B118DA&lt;br /&gt;
+82-70-8625-5205 &lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=3593</id>
		<title>Publications</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=3593"/>
		<updated>2015-09-09T13:18:18Z</updated>

		<summary type="html">&lt;p&gt;Smyang: /* 2015 */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;* [http://scholar.google.com/citations?user=3uHQIOkAAAAJ Google Scholar citation report]&lt;br /&gt;
* [http://www.researcherid.com/rid/F-7722-2010 {{#widget:AddHtml|content=&amp;lt;img src='http://labs.researcherid.com/mashlets/badge/rid-idsymbol4.gif' border='0' /&amp;gt;}}]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
* '*' co-corresponding authorship&lt;br /&gt;
==2015==&lt;br /&gt;
*49. Shim JE, '''Lee I''', Network-assisted approaches for human disease research, '''''Animal Cells and Systems''''' 2015 Aug 28 [http://www.tandfonline.com/doi/abs/10.1080/19768354.2015.1074108 Link]  [[media:19768354.2015.1074108.pdf|pdf]]&lt;br /&gt;
*48. Lee T, Oh T, Yang S, Shin J, Hwang S, Kim CY, Kim H, Shim H, Shim JE, Ronald PC, '''Lee I''', RiceNet v2: an improved network prioritization server for rice genes, '''''Nucleic Acids Research''''' 2015 July 1 [http://www.ncbi.nlm.nih.gov/pubmed/25813048 pubmed]&lt;br /&gt;
*47. Shin J, Yang S, Kim E, Kim CY, Shim H, Cho A, Kim H, Hwang S, Shim JE, '''Lee I''', FlyNet: a versatile network prioritization server for the Drosophila community, '''''Nucleic Acids Research''''' 2015 July 1 [http://www.ncbi.nlm.nih.gov/pubmed/25943544 pubmed]&lt;br /&gt;
*46. Shim JE, Hwang S, '''Lee I''', Pathway-Dependent Effectiveness of Network Algorithms for Gene Prioritization, '''''PLoS One''''' 2015 Jun 19 [http://www.ncbi.nlm.nih.gov/pubmed/26091506 pubmed]&lt;br /&gt;
*45. Han H, Shim H, Shin D, Shim JE, Ko Y, Shin J, Kim H, Cho A, Kim E, Lee T, Kim H, Kim K, Yang S, Bae D, Yun A, Kim S, Kim CY, Cho HJ, Kang B, Shin S, '''Lee I''', TRRUST: a reference database of human transcriptional regulatory interactions, '''''Scientific Reports''''' 2015 Jun 12 [http://www.ncbi.nlm.nih.gov/pubmed/26066708 pubmed]&lt;br /&gt;
*44. '''Lee I''', Mockler TC, Editorial overview: Genome studies and molecular genetics: data-driven approaches to genotype-to-phenotype studies in crops, '''''Current Opinion in Plant Biology''''' 2015 Mar 26 [http://www.ncbi.nlm.nih.gov/pubmed/25817324 pubmed]&lt;br /&gt;
*43. '''Lee I''', Kim E, Marcotte EM, Modes of Interaction between Individuals Dominate the Topologies of Real World Networks, '''''Plos One'''''  2015 Mar 20 [http://www.ncbi.nlm.nih.gov/pubmed/25793969 Pubmed]&lt;br /&gt;
*42. Kim H, Jung KW, Maeng S, Chen YL, Shin J, Shim JE, Hwang S, Janbon G, Kim T, Heitman J, Bahn YS, '''Lee I''', Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans, '''''Scientific Reports''''' 2015 Mar 5 [http://www.ncbi.nlm.nih.gov/pubmed/25739925 Pubmed]&lt;br /&gt;
*41. Lee T, Kim H, '''Lee I''', Network-assisted crop systems genetics: network inference and integrative analysis, '''''Current Opinion in Plant Biology''''' 2015 Feb 16 [http://www.ncbi.nlm.nih.gov/pubmed/25698380 Pubmed]&lt;br /&gt;
*40. Kim T, Dreher K, Nilo-Poyanco R, '''Lee I''', Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY, Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis thaliana using a genome-scale metabolic network, '''''Plant Physiology''''' 2015 Feb 10 [http://www.ncbi.nlm.nih.gov/pubmed/25670818 Pubmed]&lt;br /&gt;
*39. Kim H, Shim JE, Shin J, '''Lee I''', EcoliNet: a database of cofunctional gene network for Escherichia coli, '''''Database''''' 2015 Feb 2 [http://www.ncbi.nlm.nih.gov/pubmed/25650278 Pubmed]&lt;br /&gt;
*38. Lee T, Yang S, Kim E, Ko Y, Hwang S, Shin J, Shim JE, Shim H, Kim H, Kim C, '''Lee I''', AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species, '''''Nucleic Acids Research''''' 2015 Jan [http://www.ncbi.nlm.nih.gov/pubmed/25355510 Pubmed]&lt;br /&gt;
&lt;br /&gt;
==2014==&lt;br /&gt;
*37. Hwang S, Kim E, Yang S, Marcotte EM, '''Lee I''', MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network, '''''Nucleic Acids Res''''' 2014 Jul;42(Web server issue):W147-53. [http://www.ncbi.nlm.nih.gov/pubmed/24861622 Pubmed]&lt;br /&gt;
*36. '''Lee I''', A showcase of future plant biology: moving towards next-generation plant genetics assisted by genome sequencing and systems biology, '''''Genome Biology''''', 2014 May 23;15(5):305. [http://www.ncbi.nlm.nih.gov/pubmed/25001400 Pubmed]&lt;br /&gt;
*35. Ara Cho, Junha Shin, Sohyun Hwang, Chanyoung Kim, Hongsuk Shim, Hyojin Kim, Hanhae Kim, '''Insuk Lee''', WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans, '''''Nucleic Acids Res'''''. 2014 May 9 [http://www.ncbi.nlm.nih.gov/pubmed/24813450 Pubmed]&lt;br /&gt;
*34. Junha Shin, Tak Lee, Hanhae Kim and '''Insuk Lee''', Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction. '''''Mol. BioSyst.''''', 10 (1), 24 - 29., (2014) [http://www.ncbi.nlm.nih.gov/pubmed/24194096 Pubmed]&lt;br /&gt;
*33. Hanhae Kim, Junha Shin, Eiru Kim, Hyojin Kim, Sohyun Hwang, Jung Eun Shim, '''Insuk Lee''', YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae. '''''Nucleic Acids Research''''' 42 (D1): D731-D736., (2014) [http://www.ncbi.nlm.nih.gov/pubmed/24165882 Pubmed]&lt;br /&gt;
&lt;br /&gt;
==2013==&lt;br /&gt;
*32. Eiru Kim, Hanhae Kim and '''Insuk Lee''', JiffyNet: a web-based instant protein network modeler for newly sequenced species. '''''Nucleic Acids Research''''' 41 (W1): W192-W197., (2013) [http://www.ncbi.nlm.nih.gov/pubmed/23685435 Pubmed][http://nar.oxfordjournals.org/content/early/2013/05/17/nar.gkt419.full.pdf+html pdf]&lt;br /&gt;
*31. '''Insuk Lee''', Network approaches to the genetic dissection of phenotypes in animals and humans. '''''Animal Cells and Systems''''' Vol.17,No.2,75-79(2013)[http://www.tandfonline.com/doi/abs/10.1080/19768354.2013.789076 Link]&lt;br /&gt;
&lt;br /&gt;
==2012==&lt;br /&gt;
*30. Peggy I Wang, Sohyun Hwang, Rodney P Kincaid, Christopher S Sullivan, '''Insuk Lee*''', and Edward M Marcotte*. RIDDLE: Reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network. '''''Genome Biology''''' 13:R125 (2012)[http://www.ncbi.nlm.nih.gov/pubmed/23268829 pubmed]  &lt;br /&gt;
*29. Lee Chae*, '''Insuk Lee*''', Junha Shin, and Seung Yon Rhee*. Towards understanding how molecular networks evolve in plant. '''''Current Opinion in Plant Biology''''' 15:177-184 (2012)[http://www.ncbi.nlm.nih.gov/pubmed/22280840 pubmed]  [[media:CurrOpinPlantBiol 15-177.pdf|pdf]]&lt;br /&gt;
*28. Stephanie M. Quanbeck, Libuse Brachova, Alexis A. Campbell, Xin Guan, Ann Perera, Kun He, Seung Y. Rhee, Preeti Bais, Julie A. Dickerson, Philip Dixon, Gert Wohlgemuth, Oliver Fiehn, Lenore Barken, Iris Lange, B. Markus Lange, '''Insuk Lee''', Diego Cortes, Carolina Salazar, Joel Shuman, Vladimir Shulaev, David V. Huhman, Lloyd W. Sumner, Mary R. Roth, Ruth Welti, Hilal Ilarslan, Eve S. Wurtele, and Basil J. Nikolau. Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. '''''Frontiers in Plant Science''''' 3:1-12 (2012)  [http://www.ncbi.nlm.nih.gov/pubmed/22645570/ pubmed][[media:Fpls-03-00015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2011==&lt;br /&gt;
*27. '''Insuk Lee*''', Young-Su Seo, Dusica Coltrane, Sohyun Hwang, Taeyun Oh, Edward M. Marcotte*, and Pamela C. Ronald*. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. '''''PNAS''''' 108(45):18548-53 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/22042862 pubmed]  [[media:PNAS-2011-Lee-18548-53.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*26. Sohyun Hwang, Seung Y. Rhee*, Edward M. Marcotte*, and '''Insuk Lee*'''. Systematic prediction of candidate gene function associated to phenotype traits using the probabilistic functional gene network of Arabidopsis thaliana. '''''Nature Protocols''''' 6:1429-1442 (2011) [http://www.ncbi.nlm.nih.gov/pubmed/21886106 pubmed][[media:2011.08.25.online.nprot.2011.372.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*25. '''Insuk Lee''', Probabilistic functional gene societies. '''''Progress in Biophysics and Molecular Biology''''' 106:435-442 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21281658 pubmed] [[media:Publications_023_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*24. '''Insuk Lee*''', U. Martin Blom, Peggy I. Wang, Jung Eun Shim, and Edward M. Marcotte*. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. '''''Genome Research''''' 21:1109-1121 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21536720 pubmed] [[media:Publications_025_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*23. Young-Su Seo, Mawsheng Chern, Laura E. Bartley, Muho Han, Ki-Hong Jung, '''Insuk Lee''', Harkamal Walia, Todd Richter, Xia Xu, Peijian Cao, Wei Bai, Rajeshwari Ramanan, Fawn Amonpant, Loganathan Arul, Patrick E. Canlas, Randy Ruan, Chang-Jin Park, Xuewel Chen, Sohyun Hwang, Jong-Seong Jeon, and Pamela C. Ronald. Towards establishment of a rice stress response interactome. '''''PLoS Genetics''''' 7(4):e1002020 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21533176 pubmed] [[media:Publications_024.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2010==&lt;br /&gt;
*22. Ni Huang, '''Insuk Lee''', Edward M.Marcotte, Matthew E.Hurles, Characterising and predicting haploinsufficiency in the human genome, '''''PLoS Genet.''''' 6(10):e1001154(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20976243 pubmed]  [[media:Publications_022.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*21. Eiru Kim, Jaeyoon Shin and '''Insuk Lee''', Assessment of effectiveness of the network-guided genetic screen, '''''Mol Biosyst.''''' 6:1803-1806(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20697632 pubmed]  [[media:Publications_021.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*20. '''Insuk Lee*''', Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte, Predicting genetic modifier loci using functional gene networks, '''''Genome Research''''', 20:1143-1153(2010) . co-corresponding author  [http://www.ncbi.nlm.nih.gov/pubmed/20538624 pubmed]  [[media:Publications_020.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*19. '''Insuk Lee*''', Bindu Ambaru, Pranjali Thakkar, Edward M Marcotte*, Seung Y Rhee*, Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana, '''''Nature Biotechnology''''', 28:149-156 (2010).  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20118918 pubmed]  [[media:Publications_019.pdf|pdf]]&lt;br /&gt;
==2009==&lt;br /&gt;
*18. '''Insuk Lee''' and Edward Marcotte.  Effects of functional bias on supervised learning of a gene network model. '''In Methods in Molecular Biology''' Vol. 541, Computational Systems Biology (ed. R. Ireton, K. Montgomery, J. McDermott, R. Samudrala, R. Bumgarner).  Totowa, THE HUMANA.  p463-475 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19381535 pubmed]  [[media:Publications_018.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*17. Zhihua Li, '''Insuk Lee''', Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte, Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, '''''PLoS Biology''''', 7(10):e1000213 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19806183 pubmed]  [[media:Publications_017.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*16. Ryan S. Gray, Philip B. Abitua, Bogdan J. Wlodarczyk, Heather L. Szabo-Rogers, Otis Blanchard, '''Insuk Lee''', Greg S. Weiss, Karen J. Liu, Edward M. Marcotte, John B. Wallingford, Richard H. Finnell.  The planar cell polarity effector protein Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, '''''Nature Cell Biology''''' 11:1225-32 (2009) '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/19767740 pubmed]  [[media:Publications_016.pdf|pdf]]&lt;br /&gt;
==2008==&lt;br /&gt;
*15. Ben Lehner* and '''Insuk Lee*'''.  Network-guided genetic screening: building, testing, and using gene networks to predict gene function.  '''''Brief. Funct. Genomic'''''. 7:217-227 (2008). '''''co-corresponding author'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18445637 pubmed]  [[media:Publications_015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*14. '''Insuk Lee''' and Edward Marcotte.  Integrating Functional Genomics Data. '''In Methods in Molecular Biology''' Vol. 453, Bioinformatics Vol. II (ed. Jonathan Keith).  Totowa, THE HUMANA.  p267-278 (2008)  [http://www.ncbi.nlm.nih.gov/pubmed/18712309 pubmed]  [[media:Publications_014.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*13. '''Insuk Lee''', Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte. A single gene network accurately predicts phenotypic effects of gene perturbation in ''Caenorhabditis elegans''.  '''''Nature Genetics''''' 40:181-188 (2008). '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18223650 pubmed]  [[media:Publications_013.pdf|pdf]]&amp;lt;br /&amp;gt;This paper was the subject of the following commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and minireviews (Von Stetina S. E. and Mango S. E.  Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226.  Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model.  BioEssays 30:707)&lt;br /&gt;
&lt;br /&gt;
==Before 2007==&lt;br /&gt;
*12. '''Insuk Lee''', Rammohan Narayanaswamy, Edward Marcotte.  Bioinformatic prediction of yeast gene function.  '''In METHOD IN MICROBIOLOGY''' Vol. 36, Yeast Gene Analysis (ed. Ian Stansfield and Mike Stark), Elsevier.  p597-628, (2007)  [[media:Publications_012.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*11. Kris McGary, '''Insuk Lee''', Edward M. Marcotte.  Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes.  '''''Genome Biology''''' 8:R258 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/18053250 pubmed]  [[media:Publications_011.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*10. '''Insuk Lee''', Zhihua Li, and Edward M. Marcotte.  An improved bias-reduced probabilistic functional gene network of baker’s yeast ''Saccharomyces cerevisiae''.  '''''PLOS One''''' 2:e988 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17912365 pubmed]  [[media:Publications_010.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*9. Hart G. Traver, '''Insuk Lee''', Edward Marcotte.  A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. '''''BMC Bioinformatic''''' 8:236 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17605818  pubmed]  [[media:Publications_009.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*8. Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward Marcotte.  A Probabilistic functional network of yeast genes. '''''Science''''' 306:1555-1558, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15567862 pubmed]  [[media:Publications_008.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*7. Bork, P., Jensen, L.J., Von Mering, C., Ramani, A.K., '''Lee I''', Marcotte, E.M. Protein interaction networks from yeast to human.  '''''Curr. Opin. Struct. Biol.''''' 14:292-9, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15193308 pubmed]  [[media:Publications_007.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*6. '''Insuk Lee''' and Rasika Harshey. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. '''''Nucleic Acids Res.''''' 31:4531-4540, (2003)&lt;br /&gt;
&lt;br /&gt;
*5. '''Insuk Lee''' and Rasika Harshey.  The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. '''''J. Mol. Biol.'''''  330:261-275, (2003)&lt;br /&gt;
&lt;br /&gt;
*4. '''Insuk Lee''' and Rasika Harshey.  Importance of the conserved CA dinucleotide at Mu termini. '''''J. Mol. Biol.'''''  314:433-444, (2001)&lt;br /&gt;
&lt;br /&gt;
*3. Xue, Y., Bai, X., '''Lee, I.''', Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. '''''Mol. Cell. Biol.''''' 20:4006-4015, (2000)&lt;br /&gt;
&lt;br /&gt;
*2. Liu, J., Gong, Y., Prakash, O., Wen, L., '''Lee, I'''., Huang J.,-K., and Krishnamoorthi, R.  NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family.  '''''Protein Science'''''  7:132-141, (1998) &lt;br /&gt;
&lt;br /&gt;
*1. Wen, L., '''Lee, I.''', Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R.  Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. '''''Biochem. Biophys. Res. Commun.''''' 207:897-902, (1995)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Services&amp;diff=3367</id>
		<title>Services</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Services&amp;diff=3367"/>
		<updated>2014-11-18T06:43:30Z</updated>

		<summary type="html">&lt;p&gt;Smyang: /* Genome-scale gene networks for various species */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
=='''Genome-scale gene networks for various species'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;600&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:Tools_WormNetLogo_ver3.png|150px|link=http://www.inetbio.org/wormnet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Aranet_v2_small.gif|150px|link=http://www.inetbio.org/aranet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Saccharomyces cerevisiae''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Caenorhabditis elegans''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Arabidopsis thaliana''&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[file:Tools_RiceNetLogo.jpg|150px|link=http://www.functionalnet.org/ricenet]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Homo sapiens''&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|''Oryza sativa''&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''RIDDLE: for network-assisted Gene Set Analysis'''==&lt;br /&gt;
[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.&lt;br /&gt;
&lt;br /&gt;
=='''MORPHIN: to study human diseases based on model organism pathways'''==&lt;br /&gt;
[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.&lt;br /&gt;
&lt;br /&gt;
=='''JiffNet: to construct gene network for newly sequenced species'''==&lt;br /&gt;
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] Jiffy (instant) gene network modeler for newly sequenced species&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=3352</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=3352"/>
		<updated>2014-10-27T07:34:14Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2014&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/11&lt;br /&gt;
&amp;lt;del&amp;gt;&amp;lt;small&amp;gt;2014/11/04&amp;lt;/small&amp;gt;&amp;lt;/del&amp;gt;&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|SM Yang&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/6/8/64 The 'dnet' approach promotes emerging research on cancer patient survival.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.researchgate.net/publication/265601037_Determination_and_inference_of_eukaryotic_transcription_factor_sequence_specificity Determination and inference of eukaryotic transcription factor sequence specificity.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/11/04&lt;br /&gt;
&amp;lt;del&amp;gt;&amp;lt;small&amp;gt;2014/10/28&amp;lt;/small&amp;gt;&amp;lt;/del&amp;gt;&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414009775 Predicting Cancer-Specific Vulnerability via Data-Driven Detection of Synthetic Lethality.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JH Shin&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n9/full/nmeth.3046.html Phen-Gen: combining phenotype and genotype to analyze rare disorders.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/10/28&lt;br /&gt;
&amp;lt;del&amp;gt;&amp;lt;small&amp;gt;2014/10/07&amp;lt;/small&amp;gt;&amp;lt;/del&amp;gt;&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2877.html A community effort to assess and improve drug sensitivity prediction algorithms.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/ng/journal/v46/n9/full/ng.3051.html Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v10/n11/full/nmeth.2651.html Network-based stratification of tumor mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.sciencedirect.com/science/article/pii/S0092867414001457 Synonymous mutations frequently act as driver mutations in human cancers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003460 VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/13/12/R124 DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JH Shin&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomebiology.com/content/14/5/R52 Integrated analysis of recurrent properties of cancer genes to identify novel drivers.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://genomemedicine.com/content/4/11/89 Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/09/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=23228031 A network module-based method for identifying cancer prognostic signatures.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24429628 Realizing the promise of cancer predisposition genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24952901 Assessing the clinical utility of cancer genomic and proteomic data across tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24132290 Mutational landscape and significance across 12 major cancer types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23945592 Signatures of mutational processes in human cancer.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24390350 Discovery and saturation analysis of cancer genes across 21 tumour types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/08/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24084849 Comprehensive identification of mutational cancer driver genes across 12 tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-9&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24037244 IntOGen-mutations identifies cancer drivers across tumor types.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/07/29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-8&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23900255 Computational approaches to identify functional genetic variants in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-7&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=23770567 Mutational heterogeneity in cancer and the search for new cancer-associated genes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-6&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.nature.com/nmeth/journal/v11/n4/abs/nmeth.2891.html Cancer genomes: discerning drivers from passengers]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2014/07/22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-5&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/24071849 The Cancer Genome Atlas Pan-Cancer analysis project.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-4&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/23539594 Cancer genome landscapes.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-3&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|AR Cho&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=21900272 Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2014/07/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-2&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24670764 A promoter-level mammalian expression atlas.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2014-1&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/?term=24670763 An atlas of active enhancers across human cell types and tissues.]&lt;br /&gt;
|}&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2013&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/06/26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-31&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://nar.oxfordjournals.org/content/40/16/7690.long Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-30&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|YH Ko&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v31/n4/full/nbt.2519.html Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/06/04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-29&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[https://www.cell.com/abstract/S0092-8674(13)00439-X Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v31/n3/full/nbt.2514.html Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/28&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-27&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|YH Ko&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.pnas.org/content/102/38/13544.long Discovering statistically significant pathways in expression profiling studies]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-26&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0058977 Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v496/n7446/full/nature11981.html Dynamic regulatory network controlling TH17 cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|'''2013/05/07'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; |2013/03/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/03/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| JE Shim, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html  Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim, CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/01/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, '''JH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''ER Kim''', HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/01/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim, '''TH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/01/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| '''JE Shim''', CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
2012&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2013/01/11&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2012/12/04&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!--&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=File:Smyang.jpg&amp;diff=3231</id>
		<title>File:Smyang.jpg</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=File:Smyang.jpg&amp;diff=3231"/>
		<updated>2014-07-02T18:34:36Z</updated>

		<summary type="html">&lt;p&gt;Smyang: Smyang uploaded a new version of &amp;amp;quot;File:Smyang.jpg&amp;amp;quot;: 2014-06-02 at Yonsei Engineering Research Park&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=People&amp;diff=3230</id>
		<title>People</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=People&amp;diff=3230"/>
		<updated>2014-07-02T18:13:17Z</updated>

		<summary type="html">&lt;p&gt;Smyang: /* Research Staffs */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
=='''Principal Investigator'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;150&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_ISLee_03.jpg|77px|link=people:IS_Lee]]&lt;br /&gt;
|&lt;br /&gt;
|&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:IS_Lee|Insuk Lee]]&lt;br /&gt;
|&lt;br /&gt;
|&lt;br /&gt;
|-&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Research Fellows'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;450&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_JE_Shim_EDIT.JPG|70px|link=people:JE_Shim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot; cell-width=&amp;quot;200&amp;quot;|[[File:People_SYHwang.JPG|70px|link=people:SH_Hwang]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_Junha_Shin_cut.gif|70px|link=people:JH_Shin]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:JE_Shim|Jung Eun Shim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SH_Hwang|SoHyun Hwang]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:JH_Shin|JunHa Shin]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:JE_Shim|Research Professor]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SH_Hwang|Research Professor]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:JH_Shin|Postdoc Fellow]]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Graduate Students'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;600&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_HHKim_cut.jpg|70px|link=people:HH_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_ARCho_cut.png|70px|link=people:AR_Cho]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot; cell-width=&amp;quot;200&amp;quot;|[[File:Banmyungham.JPG|70px|link=people:ER_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Tak_sajin3.jpg|70px|link=people:T_Lee]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HH_Kim|HanHae Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:AR_Cho|ARa Cho]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:ER_Kim|Eiru Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:T_Lee|Tak Lee]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HH_Kim|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:AR_Cho|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:ER_Kim|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:T_Lee|PhD course]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_KSKim.jpg|70px|link=people:KS_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:heonjong.jpg|70px|link=people:HJ_Han]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Hjkim.jpg|70px|link=People:HJ_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:HSshim.jpg|70px|link=people:HS_Shim]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:KS_Kim|Kyung Soo Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HJ_Han|Heon Jong Han]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:HJ Kim|HyoJin Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HS_Shim|HongSeok Shim]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HJ_Han|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:HJ Kim|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HS_Shim|MS course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:KS_Kim|MS course]]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Research Staffs'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;450&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Smyang.jpg|70px|link=people:SM_Yang]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:SYLee.jpg|80px|link=people:SY_Lee]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:AYYoon.jpg|80px|link=people:AY_Yoon]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SM_Yang|Sunmo Yang]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SY_Lee|Sangyoung Lee]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:AY_Yoon|Ayeong Yoon]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SM_Yang|System Administrator]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SY_Lee|Research Assistant]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:AY_Yoon|Research Assistant]]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Undergraduate Students'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;450&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:배다솜.jpg|70px|link=People:DS Bae]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:CY KIM.jpg|70px|link=People:CY_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:BHKang.jpg|70px|link=People:BH_Kang]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:DS Bae|Dasom Bae]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:CY Kim|ChanYoung Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:BH_Kang|ByungHee Kang]]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Visiting scientists'''==&lt;br /&gt;
&lt;br /&gt;
=='''Alumni'''==&lt;br /&gt;
*Former Post-docs and Staff Scientists&lt;br /&gt;
**Taeyun Oh (2009.5-2011.12), current position; US-DOE Postdoc fellow, University of California at Davis (Pam Ronald's Lab)&lt;br /&gt;
**Samuel Beck (2011.2-2011.12), current position; Postdoc fellow, University of Texas at Austin (Jonghwan Kim's Lab)&lt;br /&gt;
**Jawon Song (2011.1-2012.5), current position; Research Scientist, Texas Advanced Computing Center, Austin, TX, USA&lt;br /&gt;
**Yoonhee Ko (2012.8-2014.2), current position; Fellow, Severance Medical center (Yonsei Medical school)&lt;br /&gt;
**Jonghoon Lee (2013.10-2014.2), current position; Assistant Professor, CHA Medical school  &lt;br /&gt;
&lt;br /&gt;
*Former Graduate Students&lt;br /&gt;
**Sungou Ji (2009.9-2011.8), MS, went to a graduate school, Sanger Genome Institute, Cambridge University, UK (Research field: Statistical Genomics)&lt;br /&gt;
&lt;br /&gt;
*Former Visiting Scientists&lt;br /&gt;
**Minkyung Shin (2012.3-2012.7), went to a graduate school, University of Southern California, USA&lt;br /&gt;
&lt;br /&gt;
*Former Undergraduate Students&lt;br /&gt;
**Ila Shin, went to a medical school (Yonsei Univ.)&lt;br /&gt;
**Yoonkyung Ko&lt;br /&gt;
**Sangyo Park, went to a law school (Kyounghee Univ.)&lt;br /&gt;
**Jayoon Shin, went to a medical school (Pusan National Univ.)&lt;br /&gt;
**Dongjoo Sun, went to a dental school (Wongwang Univ.)&lt;br /&gt;
**Eulsoo Kim&lt;br /&gt;
**Myungwhan Lee, went to a medical school (Yonsei Univ.)&lt;br /&gt;
**Moonhee Lee&lt;br /&gt;
**Jinhyun Ju, went to a graduate school, Cornell Medical School, NY, USA (Research field: Computational Systems Biology)&lt;br /&gt;
**Haeyoung Shin, went to a graduate school, Brown University, USA (Research field: Computational Neuroscience)&lt;br /&gt;
**Joonghee Soh, went to a graduate school, KAIST, Korea (Research field: Culture Technology)&lt;br /&gt;
**Hee Jung Cho&lt;br /&gt;
**TaeHwan Kim&lt;br /&gt;
**Joohyung Kim&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=File:Smyang.jpg&amp;diff=3229</id>
		<title>File:Smyang.jpg</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=File:Smyang.jpg&amp;diff=3229"/>
		<updated>2014-07-02T18:12:46Z</updated>

		<summary type="html">&lt;p&gt;Smyang: Smyang uploaded a new version of &amp;amp;quot;File:Smyang.jpg&amp;amp;quot;: 2014-06-02
at Yonsei Engineering Research Park&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=People&amp;diff=2971</id>
		<title>People</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=People&amp;diff=2971"/>
		<updated>2014-01-25T07:46:13Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
=='''Principal Investigator'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;100&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_ISLee_03.jpg|77px|link=people:IS_Lee]]&lt;br /&gt;
|&lt;br /&gt;
|&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:IS_Lee|Insuk Lee]]&lt;br /&gt;
|&lt;br /&gt;
|&lt;br /&gt;
|-&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Research Fellows'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;500&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_JE_Shim.JPG|70px|link=people:JE_Shim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot; cell-width=&amp;quot;200&amp;quot;|[[File:People_SYHwang.JPG|70px|link=people:SH_Hwang]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot; cell-width=&amp;quot;200&amp;quot;|[[File:Younhee ko.jpg|70px|link=People:YH Ko]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot; cell-width=&amp;quot;200&amp;quot;|[[File:Jonghun_Lee.jpg|70px|link=People:JH_Lee]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:JE_Shim|Jung Eun Shim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SH_Hwang|SoHyun Hwang]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:YH Ko|Younhee Ko]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:JH_Lee|Jonghun Lee]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:JE_Shim|Research Professor]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SH_Hwang|Research Professor]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:YH Ko|Postdoc Fellow]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:JH_Lee|Research Professor]]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Graduate Students'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;900&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_Junha_Shin_cut.gif|70px|link=people:JH_Shin]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_HHKim_cut.jpg|70px|link=people:HH_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_ARCho_cut.png|70px|link=people:AR_Cho]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot; cell-width=&amp;quot;200&amp;quot;|[[File:Banmyungham.JPG|70px|link=people:ER_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:tak_sajin.jpg|70px|link=people:T_Lee]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:People_KSKim.jpg|70px|link=people:KS_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:heonjong.jpg|70px|link=people:HJ_Han]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Hjkim.jpg|70px|link=People:HJ_Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:HSshim.jpg|70px|link=people:HS_Shim]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:JH_Shin|JunHa Shin]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HH_Kim|HanHae Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:AR_Cho|ARa Cho]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:ER_Kim|Eiru Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:T_Lee|Tak Lee]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:KS_Kim|Kyung Soo Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HJ_Han|Heon Jong Han]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:HJ Kim|HyoJin Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HS_Shim|HongSeok Shim]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:JH_Shin|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HH_Kim|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:AR_Cho|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:ER_Kim|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:T_Lee|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:KS_Kim|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HJ_Han|PhD course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:HJ Kim|MS course]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HS_Shim|MS course]]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Research Staffs'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;300&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Smyang.jpg|70px|link=people:SM_Yang]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:Peolpe_HYHwang_s.JPG‎|70px|link=people:HY_Hwang]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SM_Yang|SunMo Yang]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HY_Hwang|Hee Yeon Hwang]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:SM_Yang|System Administrator]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[people:HY_Hwang|Scientific Programmer]]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Undergraduate Students'''==&lt;br /&gt;
{|border=&amp;quot;0&amp;quot;  width=&amp;quot;400&amp;quot;&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[File:CY KIM.jpg|70px|link=People:CY_Kim]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:CY Kim|ChanYoung Kim]]&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|[[People:JH Kim|JooHyung Kim]]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=='''Visiting scientists'''==&lt;br /&gt;
&lt;br /&gt;
=='''Alumni'''==&lt;br /&gt;
*Former Post-docs and Staff Scientists&lt;br /&gt;
**Taeyun Oh (2009.5-2011.12), currently a US-DOE Postdoc fellow, University of California at Davis (Pam Ronald's Lab)&lt;br /&gt;
**Samuel Beck (2011.2-2011.12), currently a Postdoc fellow, University of Texas at Austin (Jonghwan Kim's Lab)&lt;br /&gt;
**Jawon Song (2011.1-2012.5), currently a Research Associate, Texas Advanced Computing Center &lt;br /&gt;
&lt;br /&gt;
*Former Graduate Students&lt;br /&gt;
**Sungou Ji (2009.9-2011.8), MS, currently a PhD student, Sanger Genome Institute, Cambridge University, UK (Research field: Statistical Genomics)&lt;br /&gt;
&lt;br /&gt;
*Former Visiting Scientists&lt;br /&gt;
**Minkyung Shin (2012.3-2012.7), currently a PhD student, University of Southern California, USA&lt;br /&gt;
&lt;br /&gt;
*Former Undergraduate Students&lt;br /&gt;
**Ila Shin, currently a medical school student (Yonsei Univ.)&lt;br /&gt;
**Yoonkyung Ko&lt;br /&gt;
**Sangyo Park, currently a law school student (Kyounghee Univ.)&lt;br /&gt;
**Jayoon Shin, currently a medical school student (Pusan National Univ.)&lt;br /&gt;
**Dongjoo Sun, currently a dental school student (Wongwang Univ.)&lt;br /&gt;
**Eulsoo Kim&lt;br /&gt;
**Myungwhan Lee, currently a medical school student (Yonsei Univ.)&lt;br /&gt;
**Moonhee Lee&lt;br /&gt;
**Jinhyun Ju, currently a PhD student, Cornell Medical School, NY, USA (Research field: Computational Systems Biology)&lt;br /&gt;
**Haeyoung Shin, currently a PhD student, Brown University, USA (Research field: Computational Neuroscience)&lt;br /&gt;
**Joonghee Soh, currently a MS student, KAIST, Korea (Research field: Culture Technology)&lt;br /&gt;
**Hee Jung Cho&lt;br /&gt;
**TaeHwan Kim&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=People:SM_Yang&amp;diff=2958</id>
		<title>People:SM Yang</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=People:SM_Yang&amp;diff=2958"/>
		<updated>2014-01-09T05:34:01Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|&lt;br /&gt;
| [[File:Smyang.jpg|150px]]&lt;br /&gt;
| &lt;br /&gt;
===Sunmo Yang===&lt;br /&gt;
Server Administrator&lt;br /&gt;
&lt;br /&gt;
*Korea National Open Univ., Dept. of Management (2009~)&lt;br /&gt;
*Yonsei Univ., Dept. of Science (1998~2007)&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
*E-mail : wool100(at)naver.com&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|&lt;br /&gt;
* Interest&lt;br /&gt;
** New mobile gadgets&lt;br /&gt;
** Cloud Computing, Virtual Computing&lt;br /&gt;
** W3C's Standards (html5 css ajax)&lt;br /&gt;
** IFRS(Accounting)&lt;br /&gt;
&lt;br /&gt;
* Available Skills&lt;br /&gt;
** Linux / Windows Server Administration&lt;br /&gt;
** Coding HTML/CSS Standard Spec.&lt;br /&gt;
** Web Scripts : ASP / ASP.net / PHP&lt;br /&gt;
** Cisco Routers &amp;amp; Alteon L4 Switches Administration for Basic Functions&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=People:SM_Yang&amp;diff=2957</id>
		<title>People:SM Yang</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=People:SM_Yang&amp;diff=2957"/>
		<updated>2014-01-09T05:33:01Z</updated>

		<summary type="html">&lt;p&gt;Smyang: /* Soon-mo Yang */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|&lt;br /&gt;
| [[File:Smyang.jpg|150px]]&lt;br /&gt;
| &lt;br /&gt;
===Sunmo Yang===&lt;br /&gt;
Server Administrator&lt;br /&gt;
&lt;br /&gt;
*Korea National Open Univ., Dept. of Management (2009~)&lt;br /&gt;
*Yonsei Univ., Dept. of Science (1998~2007)&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
*E-mail : wool100(at)naver.com&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|&lt;br /&gt;
* Interest&lt;br /&gt;
** New mobile gadjets&lt;br /&gt;
** Cloud Computing, Virtual Computing&lt;br /&gt;
** W3C's Standards (html5 css ajax)&lt;br /&gt;
** IFRS(Accounting)&lt;br /&gt;
&lt;br /&gt;
* Available Skills&lt;br /&gt;
** Linux / Windows Server Administration&lt;br /&gt;
** Coding HTML/CSS Standard Spec.&lt;br /&gt;
** Web Scripts : ASP / ASP.net / PHP&lt;br /&gt;
** Cisco Routers &amp;amp; Alteon L4 Switches Administration for Basic Functions&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2723</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2723"/>
		<updated>2013-04-09T16:29:33Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2013&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.4em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/05/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-24&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/05/14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-23&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-22&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|'''2013/05/07'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-20&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013/04/02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; |2013/03/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/03/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| JE Shim, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html  Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim, CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/01/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, '''JH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''ER Kim''', HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/01/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim, '''TH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/01/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| '''JE Shim''', CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
2012&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2013/01/11&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2012/12/04&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
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&amp;lt;!--&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
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|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
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|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2719</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2719"/>
		<updated>2013-04-01T13:02:16Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2013&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=5|Undecided&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|'''2013/04/01'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-19&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; |2013/03/12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/03/05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| JE Shim, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html  Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim, CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/01/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, '''JH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''ER Kim''', HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/01/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim, '''TH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/01/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| '''JE Shim''', CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
2012&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2013/01/11&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2012/12/04&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
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&amp;lt;!--&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
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|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
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|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
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|-&lt;br /&gt;
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|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
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|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
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|-&lt;br /&gt;
|T Lee&lt;br /&gt;
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|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Welcome_to_Network_Biology_Laboratory&amp;diff=2701</id>
		<title>Welcome to Network Biology Laboratory</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Welcome_to_Network_Biology_Laboratory&amp;diff=2701"/>
		<updated>2013-03-06T08:53:52Z</updated>

		<summary type="html">&lt;p&gt;Smyang: /* Oral Presentation */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
&lt;br /&gt;
{|border = &amp;quot;0&amp;quot;&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|&lt;br /&gt;
[[File : People_Album_Spring2012_main.jpg|544px|center|middle|Main Photo]]&lt;br /&gt;
&lt;br /&gt;
|colspan=2|&lt;br /&gt;
[http://www2.clustrmaps.com/user/563d3fa7 http://www2.clustrmaps.com/stats/maps-no_clusters/www.netbiolab.org-thumb.jpg]&lt;br /&gt;
|-&lt;br /&gt;
|width=&amp;quot;185&amp;quot; style=&amp;quot;text-align:center;vertical-align:top;padding:0 0 0 5px;&amp;quot;|&lt;br /&gt;
=== Oral Presentation ===&lt;br /&gt;
&amp;lt;pre style=&amp;quot;text-align:left;&amp;quot;&amp;gt;&lt;br /&gt;
   JE Shim&lt;br /&gt;
   T Lee&lt;br /&gt;
** HJ Han   7 Mar&lt;br /&gt;
   JH Shin  &lt;br /&gt;
   KS Kim&lt;br /&gt;
   ER Kim&lt;br /&gt;
   YH Ko&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|colspan=3|&lt;br /&gt;
&lt;br /&gt;
===Contact Informations===&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Yonsei University 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749, Korea &lt;br /&gt;
Office: Engineering Research Park B118DA&lt;br /&gt;
&lt;br /&gt;
+82-70-8625-5205 &lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
|}&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2695</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2695"/>
		<updated>2013-03-05T01:28:44Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2013&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=7|Undecided&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v45/n2/full/ng.2504.html Chromatin marks identify critical cell types for fine mapping complex trait variants]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|T Lee&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412013529 Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.sciencedirect.com/science/article/pii/S0092867412015565 Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003201 Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01555-3 Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-xx&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|'''2013/03/05'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-17&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002311 Global Mapping of Cell Type–Specific Open Chromatin by FAIRE-seq Reveals the Regulatory Role of the NFI Family in Adipocyte Differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-16&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| ER Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nrg/journal/v10/n10/full/nrg2641.html ChIP–seq: advantages and challenges of a maturing technology]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/21&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002830 Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-14&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| KS Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.cell.com/abstract/S0092-8674(12)01424-9 A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/6/1015.long Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics.]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| HJ Han&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/ng/journal/v43/n3/full/ng.759.html Chromatin accessibility pre-determines glucocorticoid receptor binding patterns]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| JE Shim, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/21/3/447.full.pdf+html  Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim, CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/01/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, '''JH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''ER Kim''', HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/01/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim, '''TH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/01/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| '''JE Shim''', CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
2012&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2013/01/11&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2012/12/04&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
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|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
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|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
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|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
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{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
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|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
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SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
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|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
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|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2659</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2659"/>
		<updated>2013-01-25T06:26:07Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2013&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/02/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| JE Shim, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/early/2010/11/24/gr.112623.110.full.pdf+html  Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|'''2013/02/01'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim, CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/01/25&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, '''JH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''ER Kim''', HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/01/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim, '''TH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/01/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| '''JE Shim''', CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
2012&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2013/01/11&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2012/12/04&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!--&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Web_Resources&amp;diff=2658</id>
		<title>Web Resources</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Web_Resources&amp;diff=2658"/>
		<updated>2013-01-24T15:58:56Z</updated>

		<summary type="html">&lt;p&gt;Smyang: Protected &amp;quot;Web Resources&amp;quot; (‎[edit=sysop] (indefinite) ‎[move=sysop] (indefinite))&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== Knowledgebase, GATEWAY DBs, Genome/Gene Annotations ==&lt;br /&gt;
*[http://www.nature.com/scitable Scitable by Nature] Learn Science at Nature Education&lt;br /&gt;
*[http://5e.plantphys.net/index.php Plant Physiology web]&lt;br /&gt;
*[http://www.ebi.ac.uk/ EBI]&lt;br /&gt;
*[http://www.ncbi.nlm.nih.gov/ NCBI]&lt;br /&gt;
*[http://www.genomesonline.org/ GOLD] Genome Online Database-Genome project statistics and download links&lt;br /&gt;
*[http://genome.ucsc.edu/ UCSC genome browser home]&lt;br /&gt;
*[http://asia.ensembl.org/ ENSEMBL genome browser home]&lt;br /&gt;
*[http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi CCDS] The concensus protein coding regions among NCBI, Ensembl, and Sanger (Havana) annotation &lt;br /&gt;
*[http://www.gencodegenes.org/ GENCODE] The Encyclopedia of Genes&lt;br /&gt;
*[http://dbtss.hgc.jp/ DBTSS] Transcription start site DB (with tissue specific information)&lt;br /&gt;
*[http://epd.vital-it.ch/ EPD] The Eukaryotic Promoter Database&lt;br /&gt;
*[http://tiprod.cbi.pku.edu.cn:8080/index.html TiProD] The tissue-specific Promoter DB&lt;br /&gt;
&lt;br /&gt;
== The Encyclopedia of DNA Element (ENCODE) Data links ==&lt;br /&gt;
*[http://genome.ucsc.edu/ENCODE/dataSummary.html ENCODE data summary] List all released/approved experiments &lt;br /&gt;
*[http://genome.ucsc.edu/ENCODE/ ENCODE] Encyclopedia of DNA Elements project (human)&lt;br /&gt;
*[http://www.nature.com/encode/ ENCODE explore] Access to collected papers exploring ENCODE data&lt;br /&gt;
*[http://www.uwencode.org/data UWencode] ENCODE (human and mouse) data browser and download site&lt;br /&gt;
*[http://genome.crg.cat/encode_RNA_dashboard/ RNA Dashboard] DB for raw transcriptome data from ENCODE&lt;br /&gt;
*[http://www.mouseencode.org/ Mouse ENCODE] ENCODE for mouse&lt;br /&gt;
*[http://modencode.org/ modENCODE] ENCODE for animal models (worm, fly)&lt;br /&gt;
&lt;br /&gt;
== NGS data analysis tools ==&lt;br /&gt;
*[http://code.google.com/p/bedops/ BEDOPS]A suite for common genome analysis tasks with high scalability and flexibility &lt;br /&gt;
*[http://code.google.com/p/bedtools/ BEDTools] A suite for BED (Browser Extensible Data) and GFF (General Feature Format) format.&lt;br /&gt;
*[http://samtools.sourceforge.net/ SAMtools] A suite for SAM (Sequence Alignment/Map) format&lt;br /&gt;
*[http://biowhat.ucsd.edu/homer/ Homer] A suite of tools for Motif Discovery and NGS (ChIP-Seq, RNA-Seq, DNase-Seq, Hi-C). Excellent documentation!&lt;br /&gt;
*[http://fureylab.web.unc.edu/software/fseq/ F-Seq] A Feature Density Estimator for High-Throughput Sequence Tags&lt;br /&gt;
&lt;br /&gt;
== Pathway Annotation DBs ==&lt;br /&gt;
*[http://www.geneontology.org/ Gene Ontology] by Gene Ontology Consortium&lt;br /&gt;
*[http://www.agbase.msstate.edu/ AgBase] Curated DB for functional analysis of agriculural animals and plants&lt;br /&gt;
*[http://www.ebi.ac.uk/GOA/ UniProt-GOA] by EBI (support multi-species annotation)&lt;br /&gt;
*[http://www.unipathway.org/ UniPathway] a fully manually curated resource of metabolic pathways (cross-linked to KEGG, MetaCyc)&lt;br /&gt;
*[http://biocyc.org/ Biocyc] includes Metacyc, Ecocyc, Humancyc, Aracyc, Yeastcyc&lt;br /&gt;
*[http://pid.nci.nih.gov/ Pathway Interaction Database (PID)]&lt;br /&gt;
*[http://www.reactome.org/ Reactome] A manually curated and peer-reviewed pathway DB&lt;br /&gt;
&lt;br /&gt;
== Genomic Variation DBs ==&lt;br /&gt;
*[http://www.ncbi.nlm.nih.gov/variation/ NCBI Variation] Variation DBs (dbSNP, dbVar, dbGaP, ClinVar)&lt;br /&gt;
*[http://www.1000genomes.org/ 1000 Genome Project] Deep catalog of human genetic variation&lt;br /&gt;
*[http://www.completegenomics.com/ Complete Genomics] Very accurate 69 human WGS public data and more&lt;br /&gt;
*[http://evs.gs.washington.edu/EVS/ Exome Variant Server] by NHLBI GO Exome sequencing project (ESP)&lt;br /&gt;
*[http://www.mutadatabase.org/ MutaDATABASE] a centralized and standardized DNA variation DB&lt;br /&gt;
*[http://www.hgmd.org/ HGMD] The human gene mutation database (The professional version of DB is commercial.)&lt;br /&gt;
*[https://cynin.gmi.oeaw.ac.at/home/resources/atpolydb AtPolyDB] Everything about Arabidopsis natural variants (by Magnus Nordborg, GMI)&lt;br /&gt;
*[http://bergelson.uchicago.edu/regmap-data/regmap.html RegMap panel] Reginal Mapping Project for Arabidopsis natural variants (by Joy Bergelson, U on Chicago)&lt;br /&gt;
*[http://www.1001genomes.org/ 1001 Genome Project] Genetic variation] of natural population of Arabidopsis (by Detlef Weigel, MPI)&lt;br /&gt;
&lt;br /&gt;
== Epigenomics Resources ==&lt;br /&gt;
*[http://www.roadmapepigenomics.org/ Road map Epigenomics] NIH Roda map Epigenomics project home&lt;br /&gt;
*[http://www.epigenesys.eu/ EpGenSys] European network to bring together epigenetic and systems biology&lt;br /&gt;
&lt;br /&gt;
== Genotype-to-Phenotype Resources ==&lt;br /&gt;
*[http://www.ncbi.nlm.nih.gov/gap dbGaP] The database of Genotypes and Phenotypes (GWAS, WGS, Exome-seq...)&lt;br /&gt;
*[https://www.ebi.ac.uk/ega/ EGA] European Genome-phenome Archive (GWAS, WGS, Exome-seq...)&lt;br /&gt;
*[http://www.genome.gov/gwastudies/ GWAS catalog] contains SNPs with p&amp;lt;10^-5&lt;br /&gt;
*[http://jjwanglab.org:8080/gwasdb/ GWASdb] contains SNPs with p&amp;lt;10^-3&lt;br /&gt;
*[http://distild.jensenlab.org/ DistiLD] Diseases and Traits in Linkage Disequilibrium Blocks&lt;br /&gt;
*[http://www.personalgenomes.org/ Personal Genome Project]&lt;br /&gt;
*[http://www.ncbi.nlm.nih.gov/gtex/GTEX2/gtex.cgi NCBI GTex(Genotype-Tissue Expression) browser] eQTL data download and analysis&lt;br /&gt;
&lt;br /&gt;
== Mutation Effect Prediction Tools ==&lt;br /&gt;
*[http://sift.jcvi.org/ SIFT(Sorting Intolerent from Tolerent substitution)]&lt;br /&gt;
*[http://genetics.bwh.harvard.edu/pph2/ PolyPhen-2 (Polymorphism Phenotyping v2)]&lt;br /&gt;
*[http://www.regulomedb.org/ RegulomeDB] Exploring DNA functional elements for noncoding variants (by Stanford, Snyder lab)&lt;br /&gt;
*[http://www.broadinstitute.org/mammals/haploreg HaplogReg] Exploring DNA functional elements for noncoding variants (by MIT, Kellis lab) &lt;br /&gt;
&lt;br /&gt;
== Gene Expression DBs ==&lt;br /&gt;
*[http://www.ncbi.nlm.nih.gov/geo/ GEO]&lt;br /&gt;
*[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress]&lt;br /&gt;
*[http://www.plexdb.org/ PLEXdb] Gene expression resources for plant and plant pathogens&lt;br /&gt;
*[http://www.weigelworld.org/resources/microarray/AtGenExpress/ AtGenExpress] Arabidopsis gene expression DB by Weigel lab&lt;br /&gt;
*[http://www.broadinstitute.org/cmap/ Connectivity Map] Expression profiles from cultured human cells treated with bioactive small molecules&lt;br /&gt;
*[http://www.ebi.ac.uk/gxa/ EBI Gene Expression Atlas] Gene expression atlas for many organisms collected from various experiments&lt;br /&gt;
*[http://www.ebi.ac.uk/gxa/array/U133A Human Cell/tissue-specific gene expression map] for 369 different cell and tissue types with 5,372 human samples from GEO&lt;br /&gt;
*[http://www.informatics.jax.org/expression.shtml GXD] The mouse Gene Expression Database (by MGI)&lt;br /&gt;
*[http://flyatlas.org/ FlyAtlas] fly gene expression in 25-17 adult and 8 larval tissues&lt;br /&gt;
&lt;br /&gt;
== Protein Expression DBs ==&lt;br /&gt;
*[http://suba.plantenergy.uwa.edu.au/ SUBA] SUBcellular location DB for Arabidopsis proteins&lt;br /&gt;
&lt;br /&gt;
== Protein/Gene Interaction DBs ==&lt;br /&gt;
*[http://code.google.com/p/psicquic/ Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)]&lt;br /&gt;
*[http://www.imexconsortium.org/ International Molecular Exchange Consortium (IMEx)]&lt;br /&gt;
*[http://wodaklab.org/iRefWeb/ iRefWeb] a web interface to PPI consolidated from 10 public DB (BIND, BioGRID, CORUM, DIP,IntAct, HPRD, MINT, MPact, MPPI, OPHID(predicted PPIs))&lt;br /&gt;
*[http://bond.unleashedinformatics.com/ BIND] the Biomolecular Interaction Network Database&lt;br /&gt;
*[http://thebiogrid.org/ BioGRID]&lt;br /&gt;
*[http://mips.helmholtz-muenchen.de/genre/proj/corum/index.html CORUM] Comprehensive Resource of Mammalian Protein Complexes&lt;br /&gt;
*[http://dip.doe-mbi.ucla.edu/dip/ DIP] Database of Interacting Proteins&lt;br /&gt;
*[http://www.ebi.ac.uk/intact/ IntAct]&lt;br /&gt;
*[http://www.hprd.org/ HPRD] Human Protein Reference Database&lt;br /&gt;
*[http://mint.bio.uniroma2.it/mint/ MINT] Molecular Interaction DB&lt;br /&gt;
*[http://mips.helmholtz-muenchen.de/genre/proj/mpact Mpact] Representation of Interaction Data at MIPS&lt;br /&gt;
*[http://mips.helmholtz-muenchen.de/proj/ppi/ MPPI] Mammalian PPI DB at MIPS&lt;br /&gt;
*[http://string-db.org/ STRING] Known and predicted PPI&lt;br /&gt;
&lt;br /&gt;
== TF Regulation DBs ==&lt;br /&gt;
*[http://autosome.ru/HOCOMOCO/ HOCOMOCO] Homo sapiencs comprehensive (TFBS) model collection (include TRANSFAC, JASPAR, ENCODE, other literatures)&lt;br /&gt;
*[http://www.gene-regulation.com/pub/databases.html TRANSFAC] TFBS(PWM) and more&lt;br /&gt;
*[http://jaspar.cgb.ki.se/ JASPAR] TFBS(PWM)&lt;br /&gt;
*[http://the_brain.bwh.harvard.edu/uniprobe/ UNIPROBE] Universal protein-binding motif inferred from Protein-binding Array experiments&lt;br /&gt;
*[http://rulai.cshl.edu/cgi-bin/TRED/ TRED] a transcriptional regulatory element database (contains curated TF-target links for 36 TF families)&lt;br /&gt;
*[http://www.oreganno.org/oregano/ ORegAnno] DNA regulatory regions, TFBS, regulatory variants&lt;br /&gt;
*[http://arabidopsis.med.ohio-state.edu/ AGRIS] Arabidopsis Gene Regulatory Information Server (by OSU)&lt;br /&gt;
*[http://plntfdb.bio.uni-potsdam.de// PlnTFDB] Plant TF database by University of Potsdam, Germany&lt;br /&gt;
*[http://planttfdb.cbi.pku.edu.cn// PlantTFDB] Plant TF database by Peking University, China&lt;br /&gt;
&lt;br /&gt;
== miRNA and target DBs ==&lt;br /&gt;
*[http://mirbase.org// miRBase] miRNA database by Manchester University&lt;br /&gt;
*[http://www.microrna.org microRNA.org] download miRNA expression atlas for human, mouse, rat&lt;br /&gt;
*[http://miRGator.kobic.re.kr miRGator] data for miRNA expression, miRNA-mRNA paired expression profile, miRNA perturbation experiments...&lt;br /&gt;
*[http://www.microrna.gr/tarbase TarBase] Manually curated microRNA-target links (includes high throughput evidences) [http://diana.cslab.ece.ntua.gr/tarbase/tarbase_download.php download page]&lt;br /&gt;
*[http://miRecords.umn.edu/miRecords miRecords] Manually curated microRNA-target links + predicted links (by 11 computational algorithms)&lt;br /&gt;
*[http://mirtarbase.mbc.nctu.edu.tw/ miRTarBase] Manually curated microRNA-target links &lt;br /&gt;
*[http://www.mir2disease.org/ miR2Disease] Manually curated microRNA-target links and microRNA-disease links&lt;br /&gt;
*[http://jcclab.science.oregonstate.edu// Carrington Lab Resource]   Various DBs for plant miRNA&lt;br /&gt;
&lt;br /&gt;
== Phenotype/Disease Annotation DBs ==&lt;br /&gt;
*[http://disease-ontology.org/ Disease Ontology] Disease ontology files [http://django.nubic.northwestern.edu/fundo/ FUNDO] DOLite_term-to-genes map&lt;br /&gt;
*[http://dga.nubic.northwestern.edu DGA] Disease and Gene Annotation, an integrative set of disease-to-gene, gene-to-gene, disease-to-disease relationships&lt;br /&gt;
*[http://www.human-phenotype-ontology.org/ Human Phenotype Ontology]&lt;br /&gt;
*[http://www.omim.org/ OMIM] Human disease DB &lt;br /&gt;
*[http://www.nlm.nih.gov/research/umls/ UMLS] Unified Medical Language Systems&lt;br /&gt;
*[http://www.who.int/classifications/icd/en/ ICD] International Classification of Disease by WHO&lt;br /&gt;
*[http://genomernai.de/GenomeRNAi/ GenomeRNAi] A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...)&lt;br /&gt;
*[http://ogeedb.embl.de OGEE] Online GEne Essentiality database&lt;br /&gt;
&lt;br /&gt;
== Drug/Bio-active chemical DBs ==&lt;br /&gt;
*[http://pubchem.ncbi.nlm.nih.gov/ PubChem] A DB contains drug structure and function by NCBI&lt;br /&gt;
*[https://www.ebi.ac.uk/chembl/ ChEMBL] A DB contains drug structure and functions by EBI&lt;br /&gt;
*[http://bioinf.charite.de/superdrug/ SuperDrug] A DB contains 3D-structures of drugs&lt;br /&gt;
&lt;br /&gt;
== Drug-Target relationship DBs ==&lt;br /&gt;
*[http://www.genome.jp/kegg/drug/ KEGG DRUG] contains information about only approved drugs&lt;br /&gt;
*[http://stitch.embl.de/ STITCH] DB for known and predicted chemical-protein interaction&lt;br /&gt;
*[http://drugbank.ca/ Drugbank] A major DB of drug/target &lt;br /&gt;
*[http://bidd.nus.edu.sg/group/ttd/ttd.asp Therapeutic Target Database (TTD)] A major DB of drug/target&lt;br /&gt;
*[http://matador.embl.de/ MATADOR] Manually Annotated Targets and Drugs Online Resource&lt;br /&gt;
*[http://pdsp.med.unc.edu/kidb.php PDSP Ki DB] data warehouse for published and internally-derived Ki, or affinity of drugs at targets&lt;br /&gt;
&lt;br /&gt;
== Clinical Trials and Pharmaco/Toxicogenomics DBs ==&lt;br /&gt;
*[http://clinicaltrials.gov/ ClinicalTrials.gov] DB for clinical trials conducted around the world&lt;br /&gt;
*[http://ctd.mdibl.org/ CTD] The Comparative Toxicogenomics database&lt;br /&gt;
*[http://www.niehs.nih.gov/research/resources/databases/cebs/index.cfm CEBS] Chemical Effects in Biological Systems, an integrated public repository for toxicogenomics data&lt;br /&gt;
*[http://www.pharmgkb.org/ PharmGKB] The Parmacogenomics Knowledgebase&lt;br /&gt;
*[http://sideeffects.embl.de/ SIDER] Side Effect Resource&lt;br /&gt;
&lt;br /&gt;
== Organism-centric DBs ==&lt;br /&gt;
*[http://www.wormbase.org/ WormBase]&lt;br /&gt;
*[http://flybase.org/ FlyBase]&lt;br /&gt;
*[http://www.informatics.jax.org/ MGI]&lt;br /&gt;
*[http://www.arabidopsis.org/ TAIR]&lt;br /&gt;
*[http://www.gramene.org/ Gramene]&lt;br /&gt;
*[http://rice.plantbiology.msu.edu/ RGAP] Rice Genome Annotation Project by MSU (Go get the part list here!)&lt;br /&gt;
*[http://www.maizegdb.org/ MaizeGDB]&lt;br /&gt;
*[http://porteco.org/ PortEco] Portal for E. coli&lt;br /&gt;
*[http://www.pseudomonas.com/ Pseudomonas Genome Database]&lt;br /&gt;
*[http://www.yeastgenome.org/ Saccharomyces Genome Database]&lt;br /&gt;
*[http://www.candidagenome.org/ Candida Genome Database]&lt;br /&gt;
*[http://img.jgi.doe.gov/ IMG] Integrated Microbial Genomes (include metagenome data) &lt;br /&gt;
&lt;br /&gt;
== Metagenome DBs  ==&lt;br /&gt;
*[http://portal.camera.calit2.net/gridsphere/gridsphere CAMERA 2.0] Curated DB and analysis tool for metagenomes&lt;br /&gt;
*[http://www.ncbi.nlm.nih.gov/genomes/lenvs.cgi NCBI Metagenome DB] Categorized with metagenome types, sources and sequencing methods.&lt;br /&gt;
*[http://www.openmicrobiome.org/ OMI] Open Microbiome Initiative&lt;br /&gt;
*[http://www.earthmicrobiome.org/ EMP] Earh Microbiome Project will sequence 10,000 metagenomes in an year, 200,000 metagenomes in 3 years&lt;br /&gt;
&lt;br /&gt;
== Cancer Genome/Cell Line Biology DBs  ==&lt;br /&gt;
*[http://cancergenome.nih.gov/ TCGA] The Cancer Genome Atlas&lt;br /&gt;
*[https://cghub.ucsc.edu/ CGHub] The Cancer Genomics Hub by UCSC (a repository for TCGA data)&lt;br /&gt;
*[http://www.icgc.org/home ICGC cancer genome project] International Cancer Genome Consortium Cancer genome project&lt;br /&gt;
*[http://www.pediatriccancergenomeproject.org/ PCGP] The Pediatric Cancer Genome Project&lt;br /&gt;
*[http://www.cancerrxgene.org/ Genomics of Drug Sensitivity in Cancer (GDSC)] The largest public DB for drug sensitivity of cancer cell line and biomarkers&lt;br /&gt;
*[http://www.broadinstitute.org/ccle/home Cancer Cell line Encyclopedia (CCLE)] by Broad-Novartis, 1000 cancer cell lines, ~1200 compounds and their combinations &lt;br /&gt;
*[http://dtp.nci.nih.gov/docs/cancer/cancer_data.html DTP human tumor cell line screen] by NCI-60&lt;br /&gt;
*[http://dtp.nci.nih.gov/ Developmental Therapeutics Program] by NCI (contains NCI-60 human tumor cell-line screen data)&lt;br /&gt;
*[http://www.sanger.ac.uk/genetics/CGP/NCI60/ NCI60 mutation data]&lt;br /&gt;
*[https://cabig.nci.nih.gov/caArray_GSKdata/ GKS Cancer Cell Line Data] genomic profiles for 300 cell lines&lt;br /&gt;
*[http://colt.ccbr.utoronto.ca/cancer/ COLT-cancer database] shRNA-based essential gene profiles for 70 breast, pancreatic, ovarian cancer cell lines&lt;br /&gt;
&lt;br /&gt;
== Stem Cell Biology DBs ==&lt;br /&gt;
*[http://discovery.hsci.harvard.edu/ SCDE] The Stem Cell Discovery Engine&lt;br /&gt;
*[http://www.maayanlab.net/ESCAPE/ ESCAPE] Embryonic Stem Cell Atlas of Pluripotency Evidence (Many stem cell related networks)&lt;br /&gt;
&lt;br /&gt;
== Other Resources ==&lt;br /&gt;
*[http://www.the-dream-project.org/ DREAM] Dialogue for Reverse Engineering Assessments and Methods&lt;br /&gt;
*[http://sagebase.org/ Sage Bionetworks]&lt;br /&gt;
*[https://www.assaydepot.com/ Assay depot] Online marketplace for pharmaceutical research service&lt;br /&gt;
*[http://genomeinterpretation.org/ CAGI] Critical Assessment of Genome Interpretation&lt;br /&gt;
*[http://numedii.com/ Numedii] New Indications for Medicines &lt;br /&gt;
*[http://nightscience.org/ nightscience] Collective creativity in scientific discovery games&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Favorite_Journals&amp;diff=2657</id>
		<title>Favorite Journals</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Favorite_Journals&amp;diff=2657"/>
		<updated>2013-01-24T15:58:39Z</updated>

		<summary type="html">&lt;p&gt;Smyang: Protected &amp;quot;Favorite Journals&amp;quot; (‎[edit=sysop] (indefinite) ‎[move=sysop] (indefinite))&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== Weekly press ==&lt;br /&gt;
*[http://www.nature.com		Nature]        [http://www.nature.com/news/ Nature news]&lt;br /&gt;
*[http://www.sciencemag.org		Science]&lt;br /&gt;
*[http://stm.sciencemag.org/            Science Translational Medicine]&lt;br /&gt;
*[http://www.pnas.org			PNAS (Proceedings of the National Academy of Sciences)]&lt;br /&gt;
&lt;br /&gt;
== Biweekly press == &lt;br /&gt;
*[http://www.cell.com			Cell]&lt;br /&gt;
&lt;br /&gt;
== Monthly press ==&lt;br /&gt;
*[http://www.nature.com/nrg		Nature Reviews Genetics]&lt;br /&gt;
*[http://www.nature.com/ng		Nature Genetics]&lt;br /&gt;
*[http://www.nature.com/nprot	        Nature Protocols]&lt;br /&gt;
*[http://www.nature.com/msb		Molecular Systems Biology]&lt;br /&gt;
*[http://www.cell.com/cell-stem-cell	Cell Stem Cell]&lt;br /&gt;
*[http://www.plosbiology.org		PLoS Biology]&lt;br /&gt;
*[http://www.plosgenetics.org		PLoS Genetics]&lt;br /&gt;
*[http://www.ploscompbiol.org		PLoS Computational Biology]&lt;br /&gt;
*[http://genomebiology.com		Genome Biology]&lt;br /&gt;
*[http://bioinformatics.oxfordjournals.org		Bioinformatics]&lt;br /&gt;
*[http://www.biomedcentral.com/bmcbioinformatics	BMC Bioinformatics]&lt;br /&gt;
*[http://www.biomedcentral.com/bmcsystbiol		BMC Systems Biology]&lt;br /&gt;
*[http://genome.cshlp.org/		Genome Research] check this on second week&lt;br /&gt;
*[http://www.nature.com/nmeth		Nature Methods] check this on second week&lt;br /&gt;
*[http://www.nature.com/nbt		Nature Biotechnology] check this on third week&lt;br /&gt;
*[http://nar.oxfordjournals.org			        Nucleic Acids Research] check this on third week&lt;br /&gt;
&lt;br /&gt;
== Bimonthly press ==&lt;br /&gt;
*[http://bib.oxfordjournals.org/ Briefings in Bioinformatics]&lt;br /&gt;
&lt;br /&gt;
== Others ==&lt;br /&gt;
*[http://www.tandf.co.uk/journals/tacs		Animal Cells and Systems]&lt;br /&gt;
*[http://www.frontiersin.org/plant_physiology		Frontiers in Plant Physiology]&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2651</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2651"/>
		<updated>2013-01-22T19:07:55Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
{|class=wikitable style=&amp;quot;text-align:center;&amp;quot;&lt;br /&gt;
|+style=&amp;quot;text-align:left;font-size:12pt&amp;quot; | 2013&lt;br /&gt;
|-&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Date&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Paper&amp;lt;br/&amp;gt;index&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Presenter&lt;br /&gt;
!scope=&amp;quot;col&amp;quot; style=&amp;quot;padding:.5em&amp;quot; | Paper title&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/02/15&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-13&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| JE Shim, CY Kim &lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nbt/journal/v30/n11/full/nbt.2422.html Interpreting noncoding genetic variation in complex traits and human disease]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-12&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/early/2010/11/24/gr.112623.110.full.pdf+html  Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1790.long Annotation of functional variation in personal genomes using RegulomeDB]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-10&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1775.long The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|2013/02/01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-09&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002599 Widespread Site-Dependent Buffering of Human Regulatory Polymorphism]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-08&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|JE Shim, CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://genome.cshlp.org/content/22/9/1748.long Linking disease associations with regulatory information in the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-07&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://genome.cshlp.org/content/22/9/1658.long Understanding transcriptional regulation by integrative analysis of transcription factor binding data]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=3|'''2013/01/25'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-06&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11279.html The long-range interaction landscape of gene promoters]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-05&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|ER Kim, HS Shim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11233.html Landscape of transcription in human cells]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-04&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|HJ Han, JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11245.html Architecture of the human regulatory network derived from ENCODE data]&lt;br /&gt;
&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=2|2013/01/18&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-03&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|KS Kim, '''TH Kim'''&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11212.html An expansive human regulatory lexicon encoded in transcription factor footprints]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-02&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|'''HJ Han''', JH Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left;&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11232.html The accessible chromatin landscape of the human genome]&lt;br /&gt;
|-&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot; rowspan=1|2013/01/11&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;|2013-01&lt;br /&gt;
|style=&amp;quot;padding:.4em;&amp;quot;| '''JE Shim''', CY Kim&lt;br /&gt;
|style=&amp;quot;padding:.4em;text-align:left&amp;quot;|[http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html An integrated encyclopedia of DNA elements in the human genome]&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
2012&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2013/01/11&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;1&amp;quot;|2012/12/04&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!--&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Services&amp;diff=2606</id>
		<title>Services</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Services&amp;diff=2606"/>
		<updated>2012-12-28T08:39:29Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
==Genome-scale gene networks for model organisms==&lt;br /&gt;
[[file:Tools_RiceNetLogo.jpg|150px|link=http://www.functionalnet.org/ricenet]] Functional gene network for ''Oryza sativa''. Version 1 (18,377 genes, 588,221 links)&lt;br /&gt;
&lt;br /&gt;
[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]] Functional gene network for ''Homo sapiens''. Version 1 (16,242 genes, 476,399 links)&lt;br /&gt;
&lt;br /&gt;
[[file:Tools_AraNetLogo.jpg|150px|link=http://www.functionalnet.org/aranet]] Functional gene network for ''Arabidopsis thaliana''. Version 1 (19,647 genes, 1,062,222 links)&lt;br /&gt;
&lt;br /&gt;
[[file:Tools_WormNetLogo.jpg|150px|link=http://www.functionalnet.org/wormnet]] Functional gene network for ''Caenorhabditis elegans''. Version 2 (15,139 genes, 999,367 links) &lt;br /&gt;
&lt;br /&gt;
[[file:Tools_YeastNetLogo.jpg|150px|link=http://www.yeastnet.org]] Functional gene network for ''Saccharomyces cerevisiae''. Version 2 (5,483 genes, 102,803 links)&lt;br /&gt;
&lt;br /&gt;
==A network-assisted Gene Set Analysis server==&lt;br /&gt;
[[File:Riddle cover title.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE: Reflective diffusion and local extension&lt;br /&gt;
 &lt;br /&gt;
==A web-based instant protein network modeler for newly sequenced species==&lt;br /&gt;
[[File:Jiffynetlogo small.png |150px|link=http://www.jiffynet.org]] JiffyNet&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2579</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2579"/>
		<updated>2012-11-21T02:30:32Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/12/4&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-81&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1589.full (TH Kim) MuSiC: identifying mutational significance in cancer genomes.]&lt;br /&gt;
|-&lt;br /&gt;
|align =&amp;quot;center&amp;quot;|2012-80&lt;br /&gt;
|[http://genome.cshlp.org/content/22/8/1383 (CY KIM) Human genomic disease variants: A neutral evolutionary explanation]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/20&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/11/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!--&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2565</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2565"/>
		<updated>2012-10-10T11:13:15Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/10/30&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-79&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00639-3 (HS Shim) Circuitry and Dynamics of Human Transcription Factor Regulatory Networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-78&lt;br /&gt;
|[http://www.nature.com/nature/journal/v487/n7408/full/nature11288.html (HJ Kim) Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2012/10/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6099/1190.short (HJ Han) Systematic Localization of Common Disease-Associated Variation in Regulatory DNA]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76&lt;br /&gt;
|[http://www.pnas.org/cgi/doi/10.1073/pnas.1201904109 (KS Kim) A public resource facilitating clinical use of genomes] &lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;8&amp;quot; |2012/07/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HJ Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!--&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2480</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2480"/>
		<updated>2012-07-12T11:49:29Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc; padding:5px;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;18&amp;quot; |2012/07/16&lt;br /&gt;
2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-77&lt;br /&gt;
|[http://genome.cshlp.org/content/22/7/1334 (HJ Han &amp;amp; YH Ko) Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-76 &lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/100.full (JE Shim) An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People] &lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-75&lt;br /&gt;
|[http://www.sciencemag.org/content/337/6090/64.abstract (JE Shim) Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-74&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10933.html &amp;quot;CANCELED&amp;quot; (Ara Cho) The clonal and mutational evolution spectrum of primary triple-negative breast cancers]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-73&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063581/ (SH Hwang) Network-based classification of breast cancer metastasis]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-72&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002707 (T Lee&amp;amp;CY Kim)Brain Expression Genome-Wide Association Study (eGWAS) Identifies Human Disease-Associated Variants]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-71&lt;br /&gt;
|[http://www.pnas.org/cgi/pmidlookup?view=long&amp;amp;pmid=22499789 &amp;quot;CANCELED&amp;quot;(T Lee&amp;amp;CY Kim)Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-70&lt;br /&gt;
|[http://genome.cshlp.org/content/20/9/1297 (ER Kim&amp;amp;TH Kim)The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-69&lt;br /&gt;
|[http://www.nature.com/ng/journal/v43/n5/full/ng.806.html (ER Kim&amp;amp;TH Kim)A framework for variation discovery and genotyping using next-generation DNA sequencing data]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-68&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/16/2078.long (ER Kim&amp;amp;TH Kim)The Sequence Alignment/Map format and SAMtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-67&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/early/2011/06/07/bioinformatics.btr330 (ER Kim&amp;amp;TH Kim)The Variant Call Format and VCFtools]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HS Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv6 &amp;quot;CANCELED&amp;quot;(T Lee&amp;amp;CY Kim)Therapeutic Modulation of Microbiota-Host Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv7.short &amp;quot;CANCELED&amp;quot;(AR Cho,JH Ju)Microbiota, Disease, and Back to Health: A Metastable Journey]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/07/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2012/07/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
|[http://www.nature.com/nature/journal/v480/n7376/full/nature10665.html (AR Cho&amp;amp;JH Ju)Predicting mutation outcome from early stochastic variation in genetic interaction partners]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
|[http://genome.cshlp.org/content/22/6/1163 (JE Shim&amp;amp;KS Kim)Identification of microRNA-regulated gene networks by expression analysis of target genes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
|[http://www.nature.com/ng/journal/v44/n6/full/ng.2303.html (JE Shim&amp;amp;KS Kim)Exome sequencing and the genetic basis of complex traits]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/07/02&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00573-9 (JH Soh)Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
|[http://genome.cshlp.org/content/22/2/375.long (ER Kim&amp;amp;TH Kim)De novo discovery of mutated driver pathways in cancer]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
|[http://www.nature.com/msb/journal/v4/n1/full/msb20082.html (YH Go&amp;amp;HJ Han)A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201126.html (SH Hwang&amp;amp;HJ Cho)PREDICT: a method for inferring novel drug indications with application to personalized medicine]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
|[http://www.nature.com/nature/journal/v453/n7198/full/nature06973.html (SH Hwang&amp;amp;HJ Cho)Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
|[http://www.sciencemag.org/content/334/6062/1518.full (JH Shin&amp;amp;HJ Kim)Detecting Novel Associations in Large Data Sets]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-26&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-24&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-23&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-21&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-20&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/01/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-19&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-18&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-17&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-16&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-15&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-14&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-13&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-12&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-11&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-10&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-09&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-08&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-07&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-05&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-04&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-03&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-02&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-01&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|}&lt;br /&gt;
2011&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |2011/11/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-49&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-48&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-47&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-46&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-45&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-44&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-43&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-42&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-41&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/11/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-40&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-39&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-38&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-37&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-36&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-35&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-34&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/10/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-33&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-32&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-31&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |2011/10/04&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-30&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-29&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-28&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-27&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|}&lt;br /&gt;
2010&lt;br /&gt;
{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!--&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2452</id>
		<title>Journal Club</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Journal_Club&amp;diff=2452"/>
		<updated>2012-07-05T04:20:44Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{|border =&amp;quot;1&amp;quot;&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot; |Date&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_index&lt;br /&gt;
|style=&amp;quot;color:black; background-color:#dcdcdc;&amp;quot; align=&amp;quot;center&amp;quot;|Paper_title&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;32&amp;quot; |2012/07/02&lt;br /&gt;
~2012/07/19&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-66&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(12)00104-3 (YH Go&amp;amp;HS Han)The Impact of the Gut Microbiota on Human Health: An Integrative View]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-65&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1262.abstract (T Lee&amp;amp;CY Kim)Host-Gut Microbiota Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-64&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv6 (T Lee&amp;amp;CY Kim)Therapeutic Modulation of Microbiota-Host Metabolic Interactions]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-63&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1268.full (AR Cho,JH Ju)Interactions Between the Microbiota and the Immune System]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-62&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv7.short (AR Cho,JH Ju)Microbiota, Disease, and Back to Health: A Metastable Journey]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-61&lt;br /&gt;
|[http://www.sciencemag.org/content/336/6086/1255.abstract (SH Hwang&amp;amp;HJ Cho)The Application of Ecological Theory Toward an Understanding of the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-60&lt;br /&gt;
|[http://stm.sciencemag.org/content/4/137/137rv5 (SH Hwang&amp;amp;HJ Cho)Microbiota-Targeted Therapies: An Ecological Perspective]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-59&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002358 (JH Shin&amp;amp;HJ Kim)Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-58&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11209.html (JH Shin&amp;amp;HJ Kim)A framework for human microbiome research]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-57&lt;br /&gt;
|[http://www.nature.com/nature/journal/v486/n7402/full/nature11234.html (JH Shin&amp;amp;HJ Kim)Structure, function and diversity of the healthy human microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-56&lt;br /&gt;
|[http://nar.oxfordjournals.org/content/40/D1/D957.long (AR Cho&amp;amp;JH Ju)COLT-Cancer: functional genetic screening resource for essential genes in human cancer cell lines]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-55&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002511 (YH Go&amp;amp;HJ Han)Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-54&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201147.html (YH Go&amp;amp;HJ Han)A pharmacogenomic method for individualized prediction of drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-53&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10983.html (JH Soh)The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-52&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11003.html (ER Kim&amp;amp;TH Kim)The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-51&lt;br /&gt;
|[http://www.nature.com/nature/journal/v483/n7391/full/nature11005.html (ER Kim&amp;amp;TH Kim)Systematic identification of genomic markers of drug sensitivity in cancer cells]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-50&lt;br /&gt;
|[http://www.pnas.org/content/early/2011/10/13/1018854108.abstract (ER Kim&amp;amp;TH Kim)Subtype and pathway specific responses to anticancer compounds in breast cancer]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-49&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10945.html (JE Shim&amp;amp;KS Kim)De novo mutations revealed by whole-exome sequencing are strongly associated with autism]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-48&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11011.html (JE Shim&amp;amp;KS Kim)Patterns and rates of exonic de novo mutations in autism spectrum disorders]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-47&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10989.html (JE Shim&amp;amp;KS Kim)Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-46&lt;br /&gt;
|[http://www.g3journal.org/content/1/3/233.full (T Lee&amp;amp;CY Kim)Integrating Rare-Variant Testing, Function Prediction, and Gene Network in Composite Resequencing-Based Genome-Wide Association Studies (CR-GWAS)]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-45&lt;br /&gt;
|[http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002621 (T Lee&amp;amp;CY Kim)Type 2 Diabetes Risk Alleles Demonstrate Extreme Directional Differentiation among Human Populations, Compared to Other Diseases]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-44&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-43&lt;br /&gt;
|[http://www.sciencemag.org/content/335/6064/82 (AR Cho&amp;amp;JH Ju)Fitness Trade-Offs and Environmentally Induced Mutation Buffering in Isogenic C. elegans]&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-42&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-41&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-40&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-39&lt;br /&gt;
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|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-38&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-37&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-36&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-35&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2012/03/05&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-34&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-33&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-32&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |2012/02/27&amp;lt;br /&amp;gt;2012/02/28&lt;br /&gt;
| align=&amp;quot;center&amp;quot;|2012-31&lt;br /&gt;
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|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2012-30&lt;br /&gt;
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|align=&amp;quot;center&amp;quot;|2012-29&lt;br /&gt;
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|align=&amp;quot;center&amp;quot;|2012-28&lt;br /&gt;
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|align=&amp;quot;center&amp;quot;|2012-27&lt;br /&gt;
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|align=&amp;quot;center&amp;quot;|2012-25&lt;br /&gt;
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|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |2012/02/06&lt;br /&gt;
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|rowspan = &amp;quot;3&amp;quot; |2012/01/09&lt;br /&gt;
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|rowspan = &amp;quot;6&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
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|align=&amp;quot;center&amp;quot;|2012-06&lt;br /&gt;
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|rowspan = &amp;quot;3&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
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|rowspan = &amp;quot;2&amp;quot; |2012/01/09&amp;lt;br /&amp;gt;2012/01/16&lt;br /&gt;
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|rowspan = &amp;quot;3&amp;quot; |2011/11/14&lt;br /&gt;
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|rowspan = &amp;quot;3&amp;quot; |2011/11/07 &lt;br /&gt;
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|rowspan = &amp;quot;2&amp;quot; |2011/09/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-26&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-25&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/05&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-24&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-23&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/09/22 &lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-22&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-21&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|2011/06/20&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-20&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/30&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-19&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-18&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/03/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-17&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-16&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |2011/04/25&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-15&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-14&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-13&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2011/04/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-12&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-11&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-10&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-09&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/03/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-08&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-07&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/02/28&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-06&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-05&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-04&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|2011/02/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-03&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2011/01/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-02&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2011-01&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/12/27&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-29&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-28&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-27&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-26&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/11/01&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-25&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-24&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|2010/10/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-23&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|2010/09/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-22&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-21&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/26&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-20&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/05/19&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-19&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/21&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-18&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|2010/04/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-17&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |2010/04/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-16&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-15&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan=&amp;quot;2&amp;quot;|2010/03/31&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-14&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-13&lt;br /&gt;
|[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|2010/03/24&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-12&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/18&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-11&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/16&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-10&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/15&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-09&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/14&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-08&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/13&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-07&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/12&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-06&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/11&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-05&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/09&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-04&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/08&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-03&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/07&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-02&lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|2010/01/06&lt;br /&gt;
|align=&amp;quot;center&amp;quot;|2010-01&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
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{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
{| border =&amp;quot;1&amp;quot;&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |March 5 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18516045 (8,HH Kim)Mapping and quantifying mammalian transcriptomes by RNA-Seq.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/10/R106 (11,Go&amp;amp;Ju)Differential expression analysis for sequence count data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/26/1/139.short (12,Go&amp;amp;Ju)edgeR: a Bioconductor package for differential expression analysis of digital gene expression data ]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |***&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; |February 27 Mon~28 Tue, 2012&lt;br /&gt;
|rowspan = &amp;quot;7&amp;quot; | &lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n1/full/nrg2484.html (1,JW Song)RNA-Seq: a revolutionary tool for transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v8/n6/full/nmeth.1613.html (2,JW Song)Computational methods for transcriptome annotation and quantification using RNA-seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genomebiology.com/2010/11/12/220 (3,HJ Han)From RNA-seq reads to differential expression results]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nmeth/journal/v7/n9/full/nmeth.1491.html (4,AR Cho)Comprehensive comparative analysis of strand-specific RNA sequencing methods]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0026426 (5,T Lee)A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v28/n5/abs/nbt.1621.html (6,So&amp;amp;Shin)Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bioinformatics.oxfordjournals.org/content/25/9/1105.abstract (7,So&amp;amp;Shin)TopHat: discovering splice junctions with RNA-Seq]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |February 6 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125733/ mirConnX: condition-specific mRNA-microRNA network integrator]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002190 Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002415 A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/20/5/589.short Reprogramming of miRNA networks in cancer and leukemia]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)01152-4 An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; |January 30 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;5&amp;quot; | &lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00237-6 Principles and Strategies for Developing Network Models in Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/ng/journal/v37/n4/full/ng1532.html Reverse engineering of regulatory networks in human B cells]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nature/journal/v452/n7186/abs/nature06757.html Variations in DNA elucidate molecular networks that cause disease]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779083/ Harnessing gene expression to identify the genetic basis of drug resistance]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867410012936 An Integrated Approach to Uncover Drivers of Cancer]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18704161 Genetic variation in an individual human exome.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/22081227 Predicting phenotypic variation in yeast from individual genome sequences.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20435227 Clinical assessment incorporating a personal genome.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20399638 Human allelic variation: perspective from protein function, structure, and evolution.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19561590 Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/11230178 Prediction of deleterious human alleles.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/12202775 Human non-synonymous SNPs: server and survey.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/20354512 A method and server for predicting damaging missense mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1920242/ SNAP: predict effect of non-synonymous polymorphisms on function]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21920052 Computational and statistical approaches to analyzing variants identified by exome sequencing.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/18179889 Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/19684571 Targeted capture and massively parallel sequencing of 12 human exomes.]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |January 9 Mon, 2012&amp;lt;br&amp;gt;January 16 Mon, 2012&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/17637733 The distribution of fitness effects of new mutations.]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852724/ Most Rare Missense Alleles Are Deleterious in Humans: Implications for Complex Disease and Association Studies]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; |November 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;6&amp;quot; | TY Oh, &amp;lt;br&amp;gt;&lt;br /&gt;
SH Hwang, &amp;lt;br&amp;gt;&lt;br /&gt;
JE Shim, &amp;lt;br&amp;gt;&lt;br /&gt;
S Beck, &amp;lt;br&amp;gt;&lt;br /&gt;
JH Shin&lt;br /&gt;
|[http://bmir.stanford.edu/file_asset/index.php/1407/BMIR-2009-1355.pdf (Shin)Data-Driven Methods to Discover Molecular Determinants of Serious Adverse Drug Events]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v4/n11/abs/nchembio.118.html (Shin)Network pharmacology: the next paradigm in drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201171.html (Oh)Systematic exploration of synergistic drug pairs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v5/n1/full/msb200995.html (Shim)Chemogenomic profiling predicts antifungal synergies]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/32/13086 (Beck)A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nchembio/journal/v1/n7/full/nchembio747.html (Hwang)Analysis of drug-induced effect patterns to link structure and side effects of medicines]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim &amp;amp; AR Cho&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000662 Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb201131.html Cross-species discovery of syncretic drug combinations that potentiate the antifungal fluconazole]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20115.html Analysis of multiple compound–protein interactions reveals novel bioactive molecules]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | YH Ko&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v25/n10/abs/nbt1338.html Drug—target network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb200998.html A side effect resource to capture phenotypic effects of drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/18/2/206.long Quantitative systems-level determinants of human genes targeted by successful drugs]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/321/5886/263.short Drug Target Identification Using Side-Effect Similarity]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |November 7 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | JW Song&lt;br /&gt;
|[http://stm.sciencemag.org/content/3/96/96ra77.short Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data]&lt;br /&gt;
|-&lt;br /&gt;
|[http://bib.oxfordjournals.org/content/12/4/303.short Exploiting drug–disease relationships for computational drug repositioning]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.springerlink.com/content/4489r051nu2t0ul1/ Drug Discovery in a Multidimensional World: Systems, Patterns, and Networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |October 5 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; | HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/20/7/960.full Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/106/5/1374.full Quantifying environmental adaptation of metabolic pathways in metagenomics]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.pnas.org/content/104/35/13913.abstract Quantitative assessment of protein function prediction from metagenomics shotgun sequences]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; |October 4 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;4&amp;quot; | S Beck&lt;br /&gt;
|[http://www.nature.com/nature/journal/v464/n7285/full/nature08821.html A human gut microbial gene catalogue established by metagenomic sequencing]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html  Molecular eco-systems biology: towards an understanding of community function]&lt;br /&gt;
|-&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2009/04/20/gr.085464.108 Microbial community profiling for human microbiome projects: Tools, techniques, and challenges]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/nrmicro/journal/v9/n4/full/nrmicro2540.html Unravelling the effects of the environment and host genotype on the gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 19 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | TY Oh&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/596.full independently evolved virulence effectors converge onto hubs in a plant immune system Network]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.sciencemag.org/content/333/6042/601.full Evidence for network evolution in an arabidopsis interactome Map]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |September 5 Mon, 2011&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science/article/pii/S0092867411005861 Exome Sequencing of Ion Channel Genes Reveals Complex Profiles Confounding Personal Risk Assessment in Epilepsy]&lt;br /&gt;
|-&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00543-5 Pluripotency factors in Embryonic stem cells Regulate Differentiation into Germ Layers]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | &lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | August 22 Mon, 2011&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002077 Integrated Genome-scale predition of Detrimental Mutations in Transcription Networks]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v12/n4/abs/nrg2969.html From expression QTLs to personalized transcriptomics]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|June 20 Mon, 2011&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001046 a user's guide to the encyclopedia of DNA elements(ENCODE)]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 30 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | HH Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature09944.html enterotypes of the human gut microbiome]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v7/n1/full/msb20116.html toward molecular trait-based ecology, through intergration of biogeochemical, geographical and metagenomic data]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | May 16 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002047 variable pathogenicity determines individual lifespan in ''caenorhabditis elegans'']&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00371-0 a high-resolution ''c.elegans'' essential gene network based on phenotypic profiling of a complex tissue]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |April 25 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;3&amp;quot; |S Beck&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pubmed/21376230 Hallmarks of Cancer : The next generation]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00296-0 Mapping Cancer Origins]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.cell.com/abstract/S0092-8674(11)00297-2 Genetic Interactions in Cancer Progression and Treatment]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 11 Mon, 2011&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001273 Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|***Changed!***&lt;br /&gt;
[http://www.ncbi.nlm.nih.gov/pubmed/19557189 Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 28 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|TY Oh&lt;br /&gt;
|[http://www.pnas.org/content/106/44/18843.long profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201076.html cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|March 14 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WSN-51SFHJD-1&amp;amp;_user=44062&amp;amp;_coverDate=01%2F07%2F2011&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=2f6017aab4c794ed7e78fbbd8447077a&amp;amp;searchtype=a phenotypic landscape of a bacterial cell]&lt;br /&gt;
|-&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb2010107.html cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action]&lt;br /&gt;
|-&lt;br /&gt;
&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|February 28 Mon, 2011&lt;br /&gt;
|KS Kim&lt;br /&gt;
|[http://www.pnas.org/content/early/2010/09/23/1004666107.abstract genomic patterns of pleiotropy and the evolution of complexity]&lt;br /&gt;
|-&lt;br /&gt;
|HJ Han&lt;br /&gt;
|[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001009 simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 21 Mon, 2011&lt;br /&gt;
|MH Lee&lt;br /&gt;
|[http://www.nature.com/msb/journal/v6/n1/full/msb201071.html dynamic interaction networks in a hierarchically organized tissue]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|February 14 Mon, 2011&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.sciencemag.org/content/330/6009/1385.abstract rewiring of genetic networks in response to DNA damage]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|January 31 Mon, 2011&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|JW Song&lt;br /&gt;
|[http://www.nature.com/nrg/journal/v10/n9/abs/nrg2633.html Applying mass spectrometry-based proteomics to genetics, genomics and network biology]&lt;br /&gt;
|-&lt;br /&gt;
|[http://physiolgenomics.physiology.org/content/33/1/18.long Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; | December 27 Mon, 2010&lt;br /&gt;
|ER Kim&lt;br /&gt;
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 15 Mon, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]&lt;br /&gt;
|-&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B8JDC-50J4MRJ-2&amp;amp;_user=44062&amp;amp;_coverDate=10%2F10%2F2010&amp;amp;_rdoc=1&amp;amp;_fmt=high&amp;amp;_orig=search&amp;amp;_origin=search&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;view=c&amp;amp;_acct=C000004738&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=44062&amp;amp;md5=7667a67cf8ba3f68117b8d0ff85a8887&amp;amp;searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot;|November 1 Mon, 2010&lt;br /&gt;
|HH Kim&lt;br /&gt;
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]&lt;br /&gt;
|-&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|October 11 Mon, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|September 13 Mon, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]&lt;br /&gt;
[http://www.nature.com/ng/journal/v42/n7/full/ng0710-557.html Limits_of_sequence_and_functional_conservation]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 26 Wed, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|May 19 Wed, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 21 Wed, 2010&lt;br /&gt;
|JH Shin&lt;br /&gt;
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|April 14 Wed, 2010&lt;br /&gt;
|TY Oh&lt;br /&gt;
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]&lt;br /&gt;
|-&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |&lt;br /&gt;
|rowspan = &amp;quot;2&amp;quot; |April 7 Wed, 2010&lt;br /&gt;
|HHkim&lt;br /&gt;
|&lt;br /&gt;
[http://www.pnas.org/content/early/2010/03/11/0910200107.long systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes]&lt;br /&gt;
|-&lt;br /&gt;
|T Lee&lt;br /&gt;
|&lt;br /&gt;
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 31 Wed, 2010&lt;br /&gt;
|JE Shim&lt;br /&gt;
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]&lt;br /&gt;
[http://www.nature.com/nrm/journal/v10/n10/abs/nrm2766.html systems_biology_of_stem_cell_fate_and_cellular_reprogramming]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Mar 24 Wed, 2010&lt;br /&gt;
|SH Hwang&lt;br /&gt;
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 18 Mon, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 16 Sat, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 15 Fri, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 14 Thu, 2010&lt;br /&gt;
|HH kim&lt;br /&gt;
|chemogenomic_profiling_predicts_antifungal_synergies&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 13 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|edgetic_perturbation_models_of_human_inherited_disorders&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 12 Tue, 2010&lt;br /&gt;
|TY Oh(T Lee)&lt;br /&gt;
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 11 Mon, 2010&lt;br /&gt;
|JE Shim(MH Lee)&lt;br /&gt;
|predicting_new_molecular_targets_for_known_drugs.pdf&lt;br /&gt;
Reference:SEA(Similarity Ensemble Approach)&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 09 Sat, 2010&lt;br /&gt;
|SG Ji&lt;br /&gt;
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 08 Fri, 2010&lt;br /&gt;
|AR Cho&lt;br /&gt;
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 07 Thu, 2010&lt;br /&gt;
|HH Kim &lt;br /&gt;
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network&lt;br /&gt;
|-&lt;br /&gt;
|&lt;br /&gt;
|Jan 06 Wed, 2010&lt;br /&gt;
|JH Shin(ER Kim)&lt;br /&gt;
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs&lt;br /&gt;
|}&lt;br /&gt;
--&amp;gt;&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2366</id>
		<title>Publications</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2366"/>
		<updated>2012-04-12T09:46:22Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{#widget:AddHtml&lt;br /&gt;
|content=&amp;lt;span id='badgeCont967476' style='width:126px'&amp;gt;&amp;lt;a title=&amp;quot;Insuk Lee's Profile&amp;quot; href='http://www.researcherid.com/rid/F-7722-2010' target='_blank'&amp;gt;&amp;lt;img src='http://labs.researcherid.com/mashlets/badge/rid-idsymbol4.gif' border='0'&amp;gt;&amp;lt;/a&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
}}&lt;br /&gt;
* '*' co-corresponding authorship&lt;br /&gt;
==2012==&lt;br /&gt;
*29. Lee Chae, '''Insuk Lee*''', Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. '''''Current Opinion in Plant Biology''''' 15:1-8 (2012)&lt;br /&gt;
*28. Stephanie M. Quanbeck, Libuse Brachova, Alexis A. Campbell, Xin Guan, Ann Perera, Kun He, Seung Y. Rhee, Preeti Bais, Julie A. Dickerson, Philip Dixon, Gert Wohlgemuth, Oliver Fiehn, Lenore Barken, Iris Lange, B. Markus Lange, '''Insuk Lee''', Diego Cortes, Carolina Salazar, Joel Shuman, Vladimir Shulaev, David V. Huhman, Lloyd W. Sumner, Mary R. Roth, Ruth Welti, Hilal Ilarslan, Eve S. Wurtele, and Basil J. Nikolau. Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. '''''Frontiers in Plant Science''''' 3:1-12 (2012)&lt;br /&gt;
&lt;br /&gt;
==2011==&lt;br /&gt;
*27. '''Insuk Lee*''', Young-Su Seo, Dusica Coltrane, Sohyun Hwang, Taeyun Oh, Edward M. Marcotte, and Pamela C. Ronald. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. '''''PNAS''''' 108(45):18548-53 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/22042862 pubmed]  [[media:PNAS-2011-Lee-18548-53.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*26. Sohyun Hwang, Seung Y. Rhee, Edward M. Marcotte, and '''Insuk Lee'''. Systematic prediction of candidate gene function associated to phenotype traits using the probabilistic functional gene network of Arabidopsis thaliana. '''''Nature Protocols''''' 6:1429-1442 (2011) [[media:2011.08.25.online.nprot.2011.372.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*25. '''Insuk Lee''', Probabilistic functional gene societies. '''''Progress in Biophysics and Molecular Biology''''' 106:435-442 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21281658 pubmed] [[media:Publications_023_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*24. '''Insuk Lee*''', U. Martin Blom, Peggy I. Wang, Jung Eun Shim, and Edward M. Marcotte. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. '''''Genome Research''''' 21:1109-1121 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21536720 pubmed] [[media:Publications_025_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*23. Young-Su Seo, Mawsheng Chern, Laura E. Bartley, Muho Han, Ki-Hong Jung, '''Insuk Lee''', Harkamal Walia, Todd Richter, Xia Xu, Peijian Cao, Wei Bai, Rajeshwari Ramanan, Fawn Amonpant, Loganathan Arul, Patrick E. Canlas, Randy Ruan, Chang-Jin Park, Xuewel Chen, Sohyun Hwang, Jong-Seong Jeon, and Pamela C. Ronald. Towards establishment of a rice stress response interactome. '''''PLoS Genetics''''' 7(4):e1002020 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21533176 pubmed] [[media:Publications_024.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2010==&lt;br /&gt;
*22. Ni Huang, '''Insuk Lee''', Edward M.Marcotte, Matthew E.Hurles, Characterising and predicting haploinsufficiency in the human genome, '''''PLoS Genet.''''' 6(10):e1001154(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20976243 pubmed]  [[media:Publications_022.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*21. Eiru Kim, Jaeyoon Shin and '''Insuk Lee''', Assessment of effectiveness of the network-guided genetic screen, '''''Mol Biosyst.''''' 6:1803-1806(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20697632 pubmed]  [[media:Publications_021.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*20. '''Insuk Lee*''', Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte, Predicting genetic modifier loci using functional gene networks, '''''Genome Research''''', 20:1143-1153(2010) . co-corresponding author  [http://www.ncbi.nlm.nih.gov/pubmed/20538624 pubmed]  [[media:Publications_020.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*19. '''Insuk Lee*''', Bindu Ambaru, Pranjali Thakkar, Edward M Marcotte, Seung Y Rhee, Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana, '''''Nature Biotechnology''''', 28:149-156 (2010).  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20118918 pubmed]  [[media:Publications_019.pdf|pdf]]&lt;br /&gt;
==2009==&lt;br /&gt;
*18. '''Insuk Lee''' and Edward Marcotte.  Effects of functional bias on supervised learning of a gene network model. '''In Methods in Molecular Biology''' Vol. 541, Computational Systems Biology (ed. R. Ireton, K. Montgomery, J. McDermott, R. Samudrala, R. Bumgarner).  Totowa, THE HUMANA.  p463-475 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19381535 pubmed]  [[media:Publications_018.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*17. Zhihua Li, '''Insuk Lee''', Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte, Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, '''''PLoS Biology''''', 7(10):e1000213 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19806183 pubmed]  [[media:Publications_017.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*16. Ryan S. Gray, Philip B. Abitua, Bogdan J. Wlodarczyk, Heather L. Szabo-Rogers, Otis Blanchard, '''Insuk Lee''', Greg S. Weiss, Karen J. Liu, Edward M. Marcotte, John B. Wallingford, Richard H. Finnell.  The planar cell polarity effector protein Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, '''''Nature Cell Biology''''' 11:1225-32 (2009) '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/19767740 pubmed]  [[media:Publications_016.pdf|pdf]]&lt;br /&gt;
==2008==&lt;br /&gt;
*15. Ben Lehner and '''Insuk Lee'''.  Network-guided genetic screening: building, testing, and using gene networks to predict gene function.  '''''Brief. Funct. Genomic. Proteomic'''''. 7:217-227 (2008). '''''co-corresponding author'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18445637 pubmed]  [[media:Publications_015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*14. '''Insuk Lee''' and Edward Marcotte.  Integrating Functional Genomics Data. '''In Methods in Molecular Biology''' Vol. 453, Bioinformatics Vol. II (ed. Jonathan Keith).  Totowa, THE HUMANA.  p267-278 (2008)  [http://www.ncbi.nlm.nih.gov/pubmed/18712309 pubmed]  [[media:Publications_014.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*13. '''Insuk Lee''', Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte. A single gene network accurately predicts phenotypic effects of gene perturbation in ''Caenorhabditis elegans''.  '''''Nature Genetics''''' 40:181-188 (2008). '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18223650 pubmed]  [[media:Publications_013.pdf|pdf]]&amp;lt;br /&amp;gt;This paper was the subject of the following commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and minireviews (Von Stetina S. E. and Mango S. E.  Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226.  Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model.  BioEssays 30:707)&lt;br /&gt;
==Before 2007==&lt;br /&gt;
*12. '''Insuk Lee''', Rammohan Narayanaswamy, Edward Marcotte.  Bioinformatic prediction of yeast gene function.  '''In METHOD IN MICROBIOLOGY''' Vol. 36, Yeast Gene Analysis (ed. Ian Stansfield and Mike Stark), Elsevier.  p597-628, (2007)  [[media:Publications_012.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*11. Kris McGary, '''Insuk Lee''', Edward M. Marcotte.  Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes.  '''''Genome Biology''''' 8:R258 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/18053250 pubmed]  [[media:Publications_011.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*10. '''Insuk Lee''', Zhihua Li, and Edward M. Marcotte.  An improved bias-reduced probabilistic functional gene network of baker’s yeast ''Saccharomyces cerevisiae''.  '''''PLOS One''''' 2:e988 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17912365 pubmed]  [[media:Publications_010.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*9. Hart G. Traver, '''Insuk Lee''', Edward Marcotte.  A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. '''''BMC Bioinformatic''''' 8:236 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17605818  pubmed]  [[media:Publications_009.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*8. Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward Marcotte.  A Probabilistic functional network of yeast genes. '''''Science''''' 306:1555-1558, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15567862 pubmed]  [[media:Publications_008.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*7. Bork, P., Jensen, L.J., Von Mering, C., Ramani, A.K., '''Lee I''', Marcotte, E.M. Protein interaction networks from yeast to human.  '''''Curr. Opin. Struct. Biol.''''' 14:292-9, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15193308 pubmed]  [[media:Publications_007.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*6. '''Insuk Lee''' and Rasika Harshey. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. '''''Nucleic Acids Res.''''' 31:4531-4540, (2003)&lt;br /&gt;
&lt;br /&gt;
*5. '''Insuk Lee''' and Rasika Harshey.  The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. '''''J. Mol. Biol.'''''  330:261-275, (2003)&lt;br /&gt;
&lt;br /&gt;
*4. '''Insuk Lee''' and Rasika Harshey.  Importance of the conserved CA dinucleotide at Mu termini. '''''J. Mol. Biol.'''''  314:433-444, (2001)&lt;br /&gt;
&lt;br /&gt;
*3. Xue, Y., Bai, X., '''Lee, I.''', Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. '''''Mol. Cell. Biol.''''' 20:4006-4015, (2000)&lt;br /&gt;
&lt;br /&gt;
*2. Liu, J., Gong, Y., Prakash, O., Wen, L., '''Lee, I'''., Huang J.,-K., and Krishnamoorthi, R.  NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family.  '''''Protein Science'''''  7:132-141, (1998) &lt;br /&gt;
&lt;br /&gt;
*1. Wen, L., '''Lee, I.''', Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R.  Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. '''''Biochem. Biophys. Res. Commun.''''' 207:897-902, (1995)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2365</id>
		<title>Publications</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2365"/>
		<updated>2012-04-12T09:45:44Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{#widget:AddHtml&lt;br /&gt;
|content=&amp;lt;span id='badgeCont967476' style='width:126px'&amp;gt;&amp;lt;a title='Insuk Lee's Profile' href='http://www.researcherid.com/rid/F-7722-2010' target='_blank'&amp;gt;&amp;lt;img src='http://labs.researcherid.com/mashlets/badge/rid-idsymbol4.gif' border='0'&amp;gt;&amp;lt;/a&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
}}&lt;br /&gt;
* '*' co-corresponding authorship&lt;br /&gt;
==2012==&lt;br /&gt;
*29. Lee Chae, '''Insuk Lee*''', Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. '''''Current Opinion in Plant Biology''''' 15:1-8 (2012)&lt;br /&gt;
*28. Stephanie M. Quanbeck, Libuse Brachova, Alexis A. Campbell, Xin Guan, Ann Perera, Kun He, Seung Y. Rhee, Preeti Bais, Julie A. Dickerson, Philip Dixon, Gert Wohlgemuth, Oliver Fiehn, Lenore Barken, Iris Lange, B. Markus Lange, '''Insuk Lee''', Diego Cortes, Carolina Salazar, Joel Shuman, Vladimir Shulaev, David V. Huhman, Lloyd W. Sumner, Mary R. Roth, Ruth Welti, Hilal Ilarslan, Eve S. Wurtele, and Basil J. Nikolau. Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. '''''Frontiers in Plant Science''''' 3:1-12 (2012)&lt;br /&gt;
&lt;br /&gt;
==2011==&lt;br /&gt;
*27. '''Insuk Lee*''', Young-Su Seo, Dusica Coltrane, Sohyun Hwang, Taeyun Oh, Edward M. Marcotte, and Pamela C. Ronald. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. '''''PNAS''''' 108(45):18548-53 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/22042862 pubmed]  [[media:PNAS-2011-Lee-18548-53.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*26. Sohyun Hwang, Seung Y. Rhee, Edward M. Marcotte, and '''Insuk Lee'''. Systematic prediction of candidate gene function associated to phenotype traits using the probabilistic functional gene network of Arabidopsis thaliana. '''''Nature Protocols''''' 6:1429-1442 (2011) [[media:2011.08.25.online.nprot.2011.372.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*25. '''Insuk Lee''', Probabilistic functional gene societies. '''''Progress in Biophysics and Molecular Biology''''' 106:435-442 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21281658 pubmed] [[media:Publications_023_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*24. '''Insuk Lee*''', U. Martin Blom, Peggy I. Wang, Jung Eun Shim, and Edward M. Marcotte. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. '''''Genome Research''''' 21:1109-1121 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21536720 pubmed] [[media:Publications_025_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*23. Young-Su Seo, Mawsheng Chern, Laura E. Bartley, Muho Han, Ki-Hong Jung, '''Insuk Lee''', Harkamal Walia, Todd Richter, Xia Xu, Peijian Cao, Wei Bai, Rajeshwari Ramanan, Fawn Amonpant, Loganathan Arul, Patrick E. Canlas, Randy Ruan, Chang-Jin Park, Xuewel Chen, Sohyun Hwang, Jong-Seong Jeon, and Pamela C. Ronald. Towards establishment of a rice stress response interactome. '''''PLoS Genetics''''' 7(4):e1002020 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21533176 pubmed] [[media:Publications_024.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2010==&lt;br /&gt;
*22. Ni Huang, '''Insuk Lee''', Edward M.Marcotte, Matthew E.Hurles, Characterising and predicting haploinsufficiency in the human genome, '''''PLoS Genet.''''' 6(10):e1001154(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20976243 pubmed]  [[media:Publications_022.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*21. Eiru Kim, Jaeyoon Shin and '''Insuk Lee''', Assessment of effectiveness of the network-guided genetic screen, '''''Mol Biosyst.''''' 6:1803-1806(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20697632 pubmed]  [[media:Publications_021.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*20. '''Insuk Lee*''', Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte, Predicting genetic modifier loci using functional gene networks, '''''Genome Research''''', 20:1143-1153(2010) . co-corresponding author  [http://www.ncbi.nlm.nih.gov/pubmed/20538624 pubmed]  [[media:Publications_020.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*19. '''Insuk Lee*''', Bindu Ambaru, Pranjali Thakkar, Edward M Marcotte, Seung Y Rhee, Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana, '''''Nature Biotechnology''''', 28:149-156 (2010).  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20118918 pubmed]  [[media:Publications_019.pdf|pdf]]&lt;br /&gt;
==2009==&lt;br /&gt;
*18. '''Insuk Lee''' and Edward Marcotte.  Effects of functional bias on supervised learning of a gene network model. '''In Methods in Molecular Biology''' Vol. 541, Computational Systems Biology (ed. R. Ireton, K. Montgomery, J. McDermott, R. Samudrala, R. Bumgarner).  Totowa, THE HUMANA.  p463-475 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19381535 pubmed]  [[media:Publications_018.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*17. Zhihua Li, '''Insuk Lee''', Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte, Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, '''''PLoS Biology''''', 7(10):e1000213 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19806183 pubmed]  [[media:Publications_017.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*16. Ryan S. Gray, Philip B. Abitua, Bogdan J. Wlodarczyk, Heather L. Szabo-Rogers, Otis Blanchard, '''Insuk Lee''', Greg S. Weiss, Karen J. Liu, Edward M. Marcotte, John B. Wallingford, Richard H. Finnell.  The planar cell polarity effector protein Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, '''''Nature Cell Biology''''' 11:1225-32 (2009) '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/19767740 pubmed]  [[media:Publications_016.pdf|pdf]]&lt;br /&gt;
==2008==&lt;br /&gt;
*15. Ben Lehner and '''Insuk Lee'''.  Network-guided genetic screening: building, testing, and using gene networks to predict gene function.  '''''Brief. Funct. Genomic. Proteomic'''''. 7:217-227 (2008). '''''co-corresponding author'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18445637 pubmed]  [[media:Publications_015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*14. '''Insuk Lee''' and Edward Marcotte.  Integrating Functional Genomics Data. '''In Methods in Molecular Biology''' Vol. 453, Bioinformatics Vol. II (ed. Jonathan Keith).  Totowa, THE HUMANA.  p267-278 (2008)  [http://www.ncbi.nlm.nih.gov/pubmed/18712309 pubmed]  [[media:Publications_014.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*13. '''Insuk Lee''', Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte. A single gene network accurately predicts phenotypic effects of gene perturbation in ''Caenorhabditis elegans''.  '''''Nature Genetics''''' 40:181-188 (2008). '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18223650 pubmed]  [[media:Publications_013.pdf|pdf]]&amp;lt;br /&amp;gt;This paper was the subject of the following commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and minireviews (Von Stetina S. E. and Mango S. E.  Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226.  Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model.  BioEssays 30:707)&lt;br /&gt;
==Before 2007==&lt;br /&gt;
*12. '''Insuk Lee''', Rammohan Narayanaswamy, Edward Marcotte.  Bioinformatic prediction of yeast gene function.  '''In METHOD IN MICROBIOLOGY''' Vol. 36, Yeast Gene Analysis (ed. Ian Stansfield and Mike Stark), Elsevier.  p597-628, (2007)  [[media:Publications_012.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*11. Kris McGary, '''Insuk Lee''', Edward M. Marcotte.  Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes.  '''''Genome Biology''''' 8:R258 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/18053250 pubmed]  [[media:Publications_011.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*10. '''Insuk Lee''', Zhihua Li, and Edward M. Marcotte.  An improved bias-reduced probabilistic functional gene network of baker’s yeast ''Saccharomyces cerevisiae''.  '''''PLOS One''''' 2:e988 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17912365 pubmed]  [[media:Publications_010.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*9. Hart G. Traver, '''Insuk Lee''', Edward Marcotte.  A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. '''''BMC Bioinformatic''''' 8:236 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17605818  pubmed]  [[media:Publications_009.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*8. Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward Marcotte.  A Probabilistic functional network of yeast genes. '''''Science''''' 306:1555-1558, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15567862 pubmed]  [[media:Publications_008.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*7. Bork, P., Jensen, L.J., Von Mering, C., Ramani, A.K., '''Lee I''', Marcotte, E.M. Protein interaction networks from yeast to human.  '''''Curr. Opin. Struct. Biol.''''' 14:292-9, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15193308 pubmed]  [[media:Publications_007.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*6. '''Insuk Lee''' and Rasika Harshey. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. '''''Nucleic Acids Res.''''' 31:4531-4540, (2003)&lt;br /&gt;
&lt;br /&gt;
*5. '''Insuk Lee''' and Rasika Harshey.  The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. '''''J. Mol. Biol.'''''  330:261-275, (2003)&lt;br /&gt;
&lt;br /&gt;
*4. '''Insuk Lee''' and Rasika Harshey.  Importance of the conserved CA dinucleotide at Mu termini. '''''J. Mol. Biol.'''''  314:433-444, (2001)&lt;br /&gt;
&lt;br /&gt;
*3. Xue, Y., Bai, X., '''Lee, I.''', Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. '''''Mol. Cell. Biol.''''' 20:4006-4015, (2000)&lt;br /&gt;
&lt;br /&gt;
*2. Liu, J., Gong, Y., Prakash, O., Wen, L., '''Lee, I'''., Huang J.,-K., and Krishnamoorthi, R.  NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family.  '''''Protein Science'''''  7:132-141, (1998) &lt;br /&gt;
&lt;br /&gt;
*1. Wen, L., '''Lee, I.''', Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R.  Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. '''''Biochem. Biophys. Res. Commun.''''' 207:897-902, (1995)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2364</id>
		<title>Publications</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2364"/>
		<updated>2012-04-12T09:43:14Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{#widget:AddHtml&lt;br /&gt;
|content=&amp;lt;span id='badgeCont967476' style='width:126px'&amp;gt;&amp;lt;a title='Insuk Lee F-7722-2010 - ResearcherID.com' href='http://www.researcherid.com/rid/F-7722-2010' target='_blank'&amp;gt;&amp;lt;img src='http://labs.researcherid.com/mashlets/badge/rid-idsymbol4.gif' border='0'&amp;gt;&amp;lt;/a&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
}}&lt;br /&gt;
* '*' co-corresponding authorship&lt;br /&gt;
==2012==&lt;br /&gt;
*29. Lee Chae, '''Insuk Lee*''', Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. '''''Current Opinion in Plant Biology''''' 15:1-8 (2012)&lt;br /&gt;
*28. Stephanie M. Quanbeck, Libuse Brachova, Alexis A. Campbell, Xin Guan, Ann Perera, Kun He, Seung Y. Rhee, Preeti Bais, Julie A. Dickerson, Philip Dixon, Gert Wohlgemuth, Oliver Fiehn, Lenore Barken, Iris Lange, B. Markus Lange, '''Insuk Lee''', Diego Cortes, Carolina Salazar, Joel Shuman, Vladimir Shulaev, David V. Huhman, Lloyd W. Sumner, Mary R. Roth, Ruth Welti, Hilal Ilarslan, Eve S. Wurtele, and Basil J. Nikolau. Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. '''''Frontiers in Plant Science''''' 3:1-12 (2012)&lt;br /&gt;
&lt;br /&gt;
==2011==&lt;br /&gt;
*27. '''Insuk Lee*''', Young-Su Seo, Dusica Coltrane, Sohyun Hwang, Taeyun Oh, Edward M. Marcotte, and Pamela C. Ronald. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. '''''PNAS''''' 108(45):18548-53 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/22042862 pubmed]  [[media:PNAS-2011-Lee-18548-53.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*26. Sohyun Hwang, Seung Y. Rhee, Edward M. Marcotte, and '''Insuk Lee'''. Systematic prediction of candidate gene function associated to phenotype traits using the probabilistic functional gene network of Arabidopsis thaliana. '''''Nature Protocols''''' 6:1429-1442 (2011) [[media:2011.08.25.online.nprot.2011.372.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*25. '''Insuk Lee''', Probabilistic functional gene societies. '''''Progress in Biophysics and Molecular Biology''''' 106:435-442 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21281658 pubmed] [[media:Publications_023_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*24. '''Insuk Lee*''', U. Martin Blom, Peggy I. Wang, Jung Eun Shim, and Edward M. Marcotte. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. '''''Genome Research''''' 21:1109-1121 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21536720 pubmed] [[media:Publications_025_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*23. Young-Su Seo, Mawsheng Chern, Laura E. Bartley, Muho Han, Ki-Hong Jung, '''Insuk Lee''', Harkamal Walia, Todd Richter, Xia Xu, Peijian Cao, Wei Bai, Rajeshwari Ramanan, Fawn Amonpant, Loganathan Arul, Patrick E. Canlas, Randy Ruan, Chang-Jin Park, Xuewel Chen, Sohyun Hwang, Jong-Seong Jeon, and Pamela C. Ronald. Towards establishment of a rice stress response interactome. '''''PLoS Genetics''''' 7(4):e1002020 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21533176 pubmed] [[media:Publications_024.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2010==&lt;br /&gt;
*22. Ni Huang, '''Insuk Lee''', Edward M.Marcotte, Matthew E.Hurles, Characterising and predicting haploinsufficiency in the human genome, '''''PLoS Genet.''''' 6(10):e1001154(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20976243 pubmed]  [[media:Publications_022.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*21. Eiru Kim, Jaeyoon Shin and '''Insuk Lee''', Assessment of effectiveness of the network-guided genetic screen, '''''Mol Biosyst.''''' 6:1803-1806(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20697632 pubmed]  [[media:Publications_021.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*20. '''Insuk Lee*''', Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte, Predicting genetic modifier loci using functional gene networks, '''''Genome Research''''', 20:1143-1153(2010) . co-corresponding author  [http://www.ncbi.nlm.nih.gov/pubmed/20538624 pubmed]  [[media:Publications_020.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*19. '''Insuk Lee*''', Bindu Ambaru, Pranjali Thakkar, Edward M Marcotte, Seung Y Rhee, Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana, '''''Nature Biotechnology''''', 28:149-156 (2010).  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20118918 pubmed]  [[media:Publications_019.pdf|pdf]]&lt;br /&gt;
==2009==&lt;br /&gt;
*18. '''Insuk Lee''' and Edward Marcotte.  Effects of functional bias on supervised learning of a gene network model. '''In Methods in Molecular Biology''' Vol. 541, Computational Systems Biology (ed. R. Ireton, K. Montgomery, J. McDermott, R. Samudrala, R. Bumgarner).  Totowa, THE HUMANA.  p463-475 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19381535 pubmed]  [[media:Publications_018.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*17. Zhihua Li, '''Insuk Lee''', Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte, Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, '''''PLoS Biology''''', 7(10):e1000213 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19806183 pubmed]  [[media:Publications_017.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*16. Ryan S. Gray, Philip B. Abitua, Bogdan J. Wlodarczyk, Heather L. Szabo-Rogers, Otis Blanchard, '''Insuk Lee''', Greg S. Weiss, Karen J. Liu, Edward M. Marcotte, John B. Wallingford, Richard H. Finnell.  The planar cell polarity effector protein Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, '''''Nature Cell Biology''''' 11:1225-32 (2009) '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/19767740 pubmed]  [[media:Publications_016.pdf|pdf]]&lt;br /&gt;
==2008==&lt;br /&gt;
*15. Ben Lehner and '''Insuk Lee'''.  Network-guided genetic screening: building, testing, and using gene networks to predict gene function.  '''''Brief. Funct. Genomic. Proteomic'''''. 7:217-227 (2008). '''''co-corresponding author'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18445637 pubmed]  [[media:Publications_015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*14. '''Insuk Lee''' and Edward Marcotte.  Integrating Functional Genomics Data. '''In Methods in Molecular Biology''' Vol. 453, Bioinformatics Vol. II (ed. Jonathan Keith).  Totowa, THE HUMANA.  p267-278 (2008)  [http://www.ncbi.nlm.nih.gov/pubmed/18712309 pubmed]  [[media:Publications_014.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*13. '''Insuk Lee''', Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte. A single gene network accurately predicts phenotypic effects of gene perturbation in ''Caenorhabditis elegans''.  '''''Nature Genetics''''' 40:181-188 (2008). '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18223650 pubmed]  [[media:Publications_013.pdf|pdf]]&amp;lt;br /&amp;gt;This paper was the subject of the following commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and minireviews (Von Stetina S. E. and Mango S. E.  Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226.  Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model.  BioEssays 30:707)&lt;br /&gt;
==Before 2007==&lt;br /&gt;
*12. '''Insuk Lee''', Rammohan Narayanaswamy, Edward Marcotte.  Bioinformatic prediction of yeast gene function.  '''In METHOD IN MICROBIOLOGY''' Vol. 36, Yeast Gene Analysis (ed. Ian Stansfield and Mike Stark), Elsevier.  p597-628, (2007)  [[media:Publications_012.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*11. Kris McGary, '''Insuk Lee''', Edward M. Marcotte.  Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes.  '''''Genome Biology''''' 8:R258 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/18053250 pubmed]  [[media:Publications_011.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*10. '''Insuk Lee''', Zhihua Li, and Edward M. Marcotte.  An improved bias-reduced probabilistic functional gene network of baker’s yeast ''Saccharomyces cerevisiae''.  '''''PLOS One''''' 2:e988 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17912365 pubmed]  [[media:Publications_010.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*9. Hart G. Traver, '''Insuk Lee''', Edward Marcotte.  A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. '''''BMC Bioinformatic''''' 8:236 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17605818  pubmed]  [[media:Publications_009.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*8. Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward Marcotte.  A Probabilistic functional network of yeast genes. '''''Science''''' 306:1555-1558, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15567862 pubmed]  [[media:Publications_008.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*7. Bork, P., Jensen, L.J., Von Mering, C., Ramani, A.K., '''Lee I''', Marcotte, E.M. Protein interaction networks from yeast to human.  '''''Curr. Opin. Struct. Biol.''''' 14:292-9, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15193308 pubmed]  [[media:Publications_007.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*6. '''Insuk Lee''' and Rasika Harshey. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. '''''Nucleic Acids Res.''''' 31:4531-4540, (2003)&lt;br /&gt;
&lt;br /&gt;
*5. '''Insuk Lee''' and Rasika Harshey.  The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. '''''J. Mol. Biol.'''''  330:261-275, (2003)&lt;br /&gt;
&lt;br /&gt;
*4. '''Insuk Lee''' and Rasika Harshey.  Importance of the conserved CA dinucleotide at Mu termini. '''''J. Mol. Biol.'''''  314:433-444, (2001)&lt;br /&gt;
&lt;br /&gt;
*3. Xue, Y., Bai, X., '''Lee, I.''', Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. '''''Mol. Cell. Biol.''''' 20:4006-4015, (2000)&lt;br /&gt;
&lt;br /&gt;
*2. Liu, J., Gong, Y., Prakash, O., Wen, L., '''Lee, I'''., Huang J.,-K., and Krishnamoorthi, R.  NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family.  '''''Protein Science'''''  7:132-141, (1998) &lt;br /&gt;
&lt;br /&gt;
*1. Wen, L., '''Lee, I.''', Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R.  Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. '''''Biochem. Biophys. Res. Commun.''''' 207:897-902, (1995)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2363</id>
		<title>Publications</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2363"/>
		<updated>2012-04-12T09:42:24Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{#widget:AddHtml&lt;br /&gt;
|content=&amp;lt;span id='badgeCont967476' style='width:126px'&amp;gt;&amp;lt;a href='http://www.researcherid.com/rid/F-7722-2010' target='_blank'&amp;gt;&amp;lt;img src='http://labs.researcherid.com/mashlets/badge/rid-idsymbol4.gif'  alt='Insuk Lee F-7722-2010 - ResearcherID.com' border='0'&amp;gt;&amp;lt;/a&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
}}&lt;br /&gt;
* '*' co-corresponding authorship&lt;br /&gt;
==2012==&lt;br /&gt;
*29. Lee Chae, '''Insuk Lee*''', Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. '''''Current Opinion in Plant Biology''''' 15:1-8 (2012)&lt;br /&gt;
*28. Stephanie M. Quanbeck, Libuse Brachova, Alexis A. Campbell, Xin Guan, Ann Perera, Kun He, Seung Y. Rhee, Preeti Bais, Julie A. Dickerson, Philip Dixon, Gert Wohlgemuth, Oliver Fiehn, Lenore Barken, Iris Lange, B. Markus Lange, '''Insuk Lee''', Diego Cortes, Carolina Salazar, Joel Shuman, Vladimir Shulaev, David V. Huhman, Lloyd W. Sumner, Mary R. Roth, Ruth Welti, Hilal Ilarslan, Eve S. Wurtele, and Basil J. Nikolau. Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. '''''Frontiers in Plant Science''''' 3:1-12 (2012)&lt;br /&gt;
&lt;br /&gt;
==2011==&lt;br /&gt;
*27. '''Insuk Lee*''', Young-Su Seo, Dusica Coltrane, Sohyun Hwang, Taeyun Oh, Edward M. Marcotte, and Pamela C. Ronald. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. '''''PNAS''''' 108(45):18548-53 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/22042862 pubmed]  [[media:PNAS-2011-Lee-18548-53.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*26. Sohyun Hwang, Seung Y. Rhee, Edward M. Marcotte, and '''Insuk Lee'''. Systematic prediction of candidate gene function associated to phenotype traits using the probabilistic functional gene network of Arabidopsis thaliana. '''''Nature Protocols''''' 6:1429-1442 (2011) [[media:2011.08.25.online.nprot.2011.372.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*25. '''Insuk Lee''', Probabilistic functional gene societies. '''''Progress in Biophysics and Molecular Biology''''' 106:435-442 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21281658 pubmed] [[media:Publications_023_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*24. '''Insuk Lee*''', U. Martin Blom, Peggy I. Wang, Jung Eun Shim, and Edward M. Marcotte. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. '''''Genome Research''''' 21:1109-1121 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21536720 pubmed] [[media:Publications_025_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*23. Young-Su Seo, Mawsheng Chern, Laura E. Bartley, Muho Han, Ki-Hong Jung, '''Insuk Lee''', Harkamal Walia, Todd Richter, Xia Xu, Peijian Cao, Wei Bai, Rajeshwari Ramanan, Fawn Amonpant, Loganathan Arul, Patrick E. Canlas, Randy Ruan, Chang-Jin Park, Xuewel Chen, Sohyun Hwang, Jong-Seong Jeon, and Pamela C. Ronald. Towards establishment of a rice stress response interactome. '''''PLoS Genetics''''' 7(4):e1002020 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21533176 pubmed] [[media:Publications_024.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2010==&lt;br /&gt;
*22. Ni Huang, '''Insuk Lee''', Edward M.Marcotte, Matthew E.Hurles, Characterising and predicting haploinsufficiency in the human genome, '''''PLoS Genet.''''' 6(10):e1001154(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20976243 pubmed]  [[media:Publications_022.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*21. Eiru Kim, Jaeyoon Shin and '''Insuk Lee''', Assessment of effectiveness of the network-guided genetic screen, '''''Mol Biosyst.''''' 6:1803-1806(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20697632 pubmed]  [[media:Publications_021.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*20. '''Insuk Lee*''', Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte, Predicting genetic modifier loci using functional gene networks, '''''Genome Research''''', 20:1143-1153(2010) . co-corresponding author  [http://www.ncbi.nlm.nih.gov/pubmed/20538624 pubmed]  [[media:Publications_020.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*19. '''Insuk Lee*''', Bindu Ambaru, Pranjali Thakkar, Edward M Marcotte, Seung Y Rhee, Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana, '''''Nature Biotechnology''''', 28:149-156 (2010).  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20118918 pubmed]  [[media:Publications_019.pdf|pdf]]&lt;br /&gt;
==2009==&lt;br /&gt;
*18. '''Insuk Lee''' and Edward Marcotte.  Effects of functional bias on supervised learning of a gene network model. '''In Methods in Molecular Biology''' Vol. 541, Computational Systems Biology (ed. R. Ireton, K. Montgomery, J. McDermott, R. Samudrala, R. Bumgarner).  Totowa, THE HUMANA.  p463-475 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19381535 pubmed]  [[media:Publications_018.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*17. Zhihua Li, '''Insuk Lee''', Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte, Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, '''''PLoS Biology''''', 7(10):e1000213 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19806183 pubmed]  [[media:Publications_017.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*16. Ryan S. Gray, Philip B. Abitua, Bogdan J. Wlodarczyk, Heather L. Szabo-Rogers, Otis Blanchard, '''Insuk Lee''', Greg S. Weiss, Karen J. Liu, Edward M. Marcotte, John B. Wallingford, Richard H. Finnell.  The planar cell polarity effector protein Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, '''''Nature Cell Biology''''' 11:1225-32 (2009) '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/19767740 pubmed]  [[media:Publications_016.pdf|pdf]]&lt;br /&gt;
==2008==&lt;br /&gt;
*15. Ben Lehner and '''Insuk Lee'''.  Network-guided genetic screening: building, testing, and using gene networks to predict gene function.  '''''Brief. Funct. Genomic. Proteomic'''''. 7:217-227 (2008). '''''co-corresponding author'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18445637 pubmed]  [[media:Publications_015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*14. '''Insuk Lee''' and Edward Marcotte.  Integrating Functional Genomics Data. '''In Methods in Molecular Biology''' Vol. 453, Bioinformatics Vol. II (ed. Jonathan Keith).  Totowa, THE HUMANA.  p267-278 (2008)  [http://www.ncbi.nlm.nih.gov/pubmed/18712309 pubmed]  [[media:Publications_014.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*13. '''Insuk Lee''', Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte. A single gene network accurately predicts phenotypic effects of gene perturbation in ''Caenorhabditis elegans''.  '''''Nature Genetics''''' 40:181-188 (2008). '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18223650 pubmed]  [[media:Publications_013.pdf|pdf]]&amp;lt;br /&amp;gt;This paper was the subject of the following commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and minireviews (Von Stetina S. E. and Mango S. E.  Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226.  Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model.  BioEssays 30:707)&lt;br /&gt;
==Before 2007==&lt;br /&gt;
*12. '''Insuk Lee''', Rammohan Narayanaswamy, Edward Marcotte.  Bioinformatic prediction of yeast gene function.  '''In METHOD IN MICROBIOLOGY''' Vol. 36, Yeast Gene Analysis (ed. Ian Stansfield and Mike Stark), Elsevier.  p597-628, (2007)  [[media:Publications_012.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*11. Kris McGary, '''Insuk Lee''', Edward M. Marcotte.  Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes.  '''''Genome Biology''''' 8:R258 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/18053250 pubmed]  [[media:Publications_011.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*10. '''Insuk Lee''', Zhihua Li, and Edward M. Marcotte.  An improved bias-reduced probabilistic functional gene network of baker’s yeast ''Saccharomyces cerevisiae''.  '''''PLOS One''''' 2:e988 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17912365 pubmed]  [[media:Publications_010.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*9. Hart G. Traver, '''Insuk Lee''', Edward Marcotte.  A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. '''''BMC Bioinformatic''''' 8:236 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17605818  pubmed]  [[media:Publications_009.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*8. Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward Marcotte.  A Probabilistic functional network of yeast genes. '''''Science''''' 306:1555-1558, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15567862 pubmed]  [[media:Publications_008.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*7. Bork, P., Jensen, L.J., Von Mering, C., Ramani, A.K., '''Lee I''', Marcotte, E.M. Protein interaction networks from yeast to human.  '''''Curr. Opin. Struct. Biol.''''' 14:292-9, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15193308 pubmed]  [[media:Publications_007.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*6. '''Insuk Lee''' and Rasika Harshey. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. '''''Nucleic Acids Res.''''' 31:4531-4540, (2003)&lt;br /&gt;
&lt;br /&gt;
*5. '''Insuk Lee''' and Rasika Harshey.  The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. '''''J. Mol. Biol.'''''  330:261-275, (2003)&lt;br /&gt;
&lt;br /&gt;
*4. '''Insuk Lee''' and Rasika Harshey.  Importance of the conserved CA dinucleotide at Mu termini. '''''J. Mol. Biol.'''''  314:433-444, (2001)&lt;br /&gt;
&lt;br /&gt;
*3. Xue, Y., Bai, X., '''Lee, I.''', Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. '''''Mol. Cell. Biol.''''' 20:4006-4015, (2000)&lt;br /&gt;
&lt;br /&gt;
*2. Liu, J., Gong, Y., Prakash, O., Wen, L., '''Lee, I'''., Huang J.,-K., and Krishnamoorthi, R.  NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family.  '''''Protein Science'''''  7:132-141, (1998) &lt;br /&gt;
&lt;br /&gt;
*1. Wen, L., '''Lee, I.''', Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R.  Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. '''''Biochem. Biophys. Res. Commun.''''' 207:897-902, (1995)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2362</id>
		<title>Publications</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2362"/>
		<updated>2012-04-12T09:39:06Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{#widget:AddHtml&lt;br /&gt;
|content=&amp;lt;span id='badgeCont967476' style='width:126px'&amp;gt;&amp;lt;a href='http://www.researcherid.com/rid/F-7722-2010' target='_blank'&amp;gt;&amp;lt;img src='http://labs.researcherid.com/mashlets/badge/rid-idsymbol4.gif' border='0'&amp;gt;&amp;lt;/a&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
}}&lt;br /&gt;
* '*' co-corresponding authorship&lt;br /&gt;
==2012==&lt;br /&gt;
*29. Lee Chae, '''Insuk Lee*''', Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. '''''Current Opinion in Plant Biology''''' 15:1-8 (2012)&lt;br /&gt;
*28. Stephanie M. Quanbeck, Libuse Brachova, Alexis A. Campbell, Xin Guan, Ann Perera, Kun He, Seung Y. Rhee, Preeti Bais, Julie A. Dickerson, Philip Dixon, Gert Wohlgemuth, Oliver Fiehn, Lenore Barken, Iris Lange, B. Markus Lange, '''Insuk Lee''', Diego Cortes, Carolina Salazar, Joel Shuman, Vladimir Shulaev, David V. Huhman, Lloyd W. Sumner, Mary R. Roth, Ruth Welti, Hilal Ilarslan, Eve S. Wurtele, and Basil J. Nikolau. Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. '''''Frontiers in Plant Science''''' 3:1-12 (2012)&lt;br /&gt;
&lt;br /&gt;
==2011==&lt;br /&gt;
*27. '''Insuk Lee*''', Young-Su Seo, Dusica Coltrane, Sohyun Hwang, Taeyun Oh, Edward M. Marcotte, and Pamela C. Ronald. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. '''''PNAS''''' 108(45):18548-53 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/22042862 pubmed]  [[media:PNAS-2011-Lee-18548-53.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*26. Sohyun Hwang, Seung Y. Rhee, Edward M. Marcotte, and '''Insuk Lee'''. Systematic prediction of candidate gene function associated to phenotype traits using the probabilistic functional gene network of Arabidopsis thaliana. '''''Nature Protocols''''' 6:1429-1442 (2011) [[media:2011.08.25.online.nprot.2011.372.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*25. '''Insuk Lee''', Probabilistic functional gene societies. '''''Progress in Biophysics and Molecular Biology''''' 106:435-442 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21281658 pubmed] [[media:Publications_023_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*24. '''Insuk Lee*''', U. Martin Blom, Peggy I. Wang, Jung Eun Shim, and Edward M. Marcotte. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. '''''Genome Research''''' 21:1109-1121 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21536720 pubmed] [[media:Publications_025_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*23. Young-Su Seo, Mawsheng Chern, Laura E. Bartley, Muho Han, Ki-Hong Jung, '''Insuk Lee''', Harkamal Walia, Todd Richter, Xia Xu, Peijian Cao, Wei Bai, Rajeshwari Ramanan, Fawn Amonpant, Loganathan Arul, Patrick E. Canlas, Randy Ruan, Chang-Jin Park, Xuewel Chen, Sohyun Hwang, Jong-Seong Jeon, and Pamela C. Ronald. Towards establishment of a rice stress response interactome. '''''PLoS Genetics''''' 7(4):e1002020 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21533176 pubmed] [[media:Publications_024.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2010==&lt;br /&gt;
*22. Ni Huang, '''Insuk Lee''', Edward M.Marcotte, Matthew E.Hurles, Characterising and predicting haploinsufficiency in the human genome, '''''PLoS Genet.''''' 6(10):e1001154(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20976243 pubmed]  [[media:Publications_022.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*21. Eiru Kim, Jaeyoon Shin and '''Insuk Lee''', Assessment of effectiveness of the network-guided genetic screen, '''''Mol Biosyst.''''' 6:1803-1806(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20697632 pubmed]  [[media:Publications_021.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*20. '''Insuk Lee*''', Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte, Predicting genetic modifier loci using functional gene networks, '''''Genome Research''''', 20:1143-1153(2010) . co-corresponding author  [http://www.ncbi.nlm.nih.gov/pubmed/20538624 pubmed]  [[media:Publications_020.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*19. '''Insuk Lee*''', Bindu Ambaru, Pranjali Thakkar, Edward M Marcotte, Seung Y Rhee, Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana, '''''Nature Biotechnology''''', 28:149-156 (2010).  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20118918 pubmed]  [[media:Publications_019.pdf|pdf]]&lt;br /&gt;
==2009==&lt;br /&gt;
*18. '''Insuk Lee''' and Edward Marcotte.  Effects of functional bias on supervised learning of a gene network model. '''In Methods in Molecular Biology''' Vol. 541, Computational Systems Biology (ed. R. Ireton, K. Montgomery, J. McDermott, R. Samudrala, R. Bumgarner).  Totowa, THE HUMANA.  p463-475 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19381535 pubmed]  [[media:Publications_018.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*17. Zhihua Li, '''Insuk Lee''', Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte, Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, '''''PLoS Biology''''', 7(10):e1000213 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19806183 pubmed]  [[media:Publications_017.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*16. Ryan S. Gray, Philip B. Abitua, Bogdan J. Wlodarczyk, Heather L. Szabo-Rogers, Otis Blanchard, '''Insuk Lee''', Greg S. Weiss, Karen J. Liu, Edward M. Marcotte, John B. Wallingford, Richard H. Finnell.  The planar cell polarity effector protein Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, '''''Nature Cell Biology''''' 11:1225-32 (2009) '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/19767740 pubmed]  [[media:Publications_016.pdf|pdf]]&lt;br /&gt;
==2008==&lt;br /&gt;
*15. Ben Lehner and '''Insuk Lee'''.  Network-guided genetic screening: building, testing, and using gene networks to predict gene function.  '''''Brief. Funct. Genomic. Proteomic'''''. 7:217-227 (2008). '''''co-corresponding author'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18445637 pubmed]  [[media:Publications_015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*14. '''Insuk Lee''' and Edward Marcotte.  Integrating Functional Genomics Data. '''In Methods in Molecular Biology''' Vol. 453, Bioinformatics Vol. II (ed. Jonathan Keith).  Totowa, THE HUMANA.  p267-278 (2008)  [http://www.ncbi.nlm.nih.gov/pubmed/18712309 pubmed]  [[media:Publications_014.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*13. '''Insuk Lee''', Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte. A single gene network accurately predicts phenotypic effects of gene perturbation in ''Caenorhabditis elegans''.  '''''Nature Genetics''''' 40:181-188 (2008). '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18223650 pubmed]  [[media:Publications_013.pdf|pdf]]&amp;lt;br /&amp;gt;This paper was the subject of the following commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and minireviews (Von Stetina S. E. and Mango S. E.  Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226.  Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model.  BioEssays 30:707)&lt;br /&gt;
==Before 2007==&lt;br /&gt;
*12. '''Insuk Lee''', Rammohan Narayanaswamy, Edward Marcotte.  Bioinformatic prediction of yeast gene function.  '''In METHOD IN MICROBIOLOGY''' Vol. 36, Yeast Gene Analysis (ed. Ian Stansfield and Mike Stark), Elsevier.  p597-628, (2007)  [[media:Publications_012.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*11. Kris McGary, '''Insuk Lee''', Edward M. Marcotte.  Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes.  '''''Genome Biology''''' 8:R258 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/18053250 pubmed]  [[media:Publications_011.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*10. '''Insuk Lee''', Zhihua Li, and Edward M. Marcotte.  An improved bias-reduced probabilistic functional gene network of baker’s yeast ''Saccharomyces cerevisiae''.  '''''PLOS One''''' 2:e988 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17912365 pubmed]  [[media:Publications_010.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*9. Hart G. Traver, '''Insuk Lee''', Edward Marcotte.  A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. '''''BMC Bioinformatic''''' 8:236 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17605818  pubmed]  [[media:Publications_009.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*8. Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward Marcotte.  A Probabilistic functional network of yeast genes. '''''Science''''' 306:1555-1558, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15567862 pubmed]  [[media:Publications_008.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*7. Bork, P., Jensen, L.J., Von Mering, C., Ramani, A.K., '''Lee I''', Marcotte, E.M. Protein interaction networks from yeast to human.  '''''Curr. Opin. Struct. Biol.''''' 14:292-9, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15193308 pubmed]  [[media:Publications_007.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*6. '''Insuk Lee''' and Rasika Harshey. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. '''''Nucleic Acids Res.''''' 31:4531-4540, (2003)&lt;br /&gt;
&lt;br /&gt;
*5. '''Insuk Lee''' and Rasika Harshey.  The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. '''''J. Mol. Biol.'''''  330:261-275, (2003)&lt;br /&gt;
&lt;br /&gt;
*4. '''Insuk Lee''' and Rasika Harshey.  Importance of the conserved CA dinucleotide at Mu termini. '''''J. Mol. Biol.'''''  314:433-444, (2001)&lt;br /&gt;
&lt;br /&gt;
*3. Xue, Y., Bai, X., '''Lee, I.''', Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. '''''Mol. Cell. Biol.''''' 20:4006-4015, (2000)&lt;br /&gt;
&lt;br /&gt;
*2. Liu, J., Gong, Y., Prakash, O., Wen, L., '''Lee, I'''., Huang J.,-K., and Krishnamoorthi, R.  NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family.  '''''Protein Science'''''  7:132-141, (1998) &lt;br /&gt;
&lt;br /&gt;
*1. Wen, L., '''Lee, I.''', Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R.  Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. '''''Biochem. Biophys. Res. Commun.''''' 207:897-902, (1995)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2361</id>
		<title>Publications</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2361"/>
		<updated>2012-04-12T09:38:02Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{#widget:AddHtml&lt;br /&gt;
|content=&amp;lt;span id='badgeCont967476' style='width:126px'&amp;gt;&amp;lt;a href='http://www.researcherid.com/ProfileView.action?SID=W11aeEFGKe24BadoBm2&amp;amp;returnCode=ROUTER.Success&amp;amp;queryString=KG0UuZjN5WlylTFOI0R5OhSM6Q7Z9WnweDr50RDr4jk%253D&amp;amp;SrcApp=CR&amp;amp;Init=Yes' target='_blank'&amp;gt;&amp;lt;img src='http://labs.researcherid.com/mashlets/badge/rid-idsymbol4.gif' border='0'&amp;gt;&amp;lt;/a&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
}}&lt;br /&gt;
* '*' co-corresponding authorship&lt;br /&gt;
==2012==&lt;br /&gt;
*29. Lee Chae, '''Insuk Lee*''', Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. '''''Current Opinion in Plant Biology''''' 15:1-8 (2012)&lt;br /&gt;
*28. Stephanie M. Quanbeck, Libuse Brachova, Alexis A. Campbell, Xin Guan, Ann Perera, Kun He, Seung Y. Rhee, Preeti Bais, Julie A. Dickerson, Philip Dixon, Gert Wohlgemuth, Oliver Fiehn, Lenore Barken, Iris Lange, B. Markus Lange, '''Insuk Lee''', Diego Cortes, Carolina Salazar, Joel Shuman, Vladimir Shulaev, David V. Huhman, Lloyd W. Sumner, Mary R. Roth, Ruth Welti, Hilal Ilarslan, Eve S. Wurtele, and Basil J. Nikolau. Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. '''''Frontiers in Plant Science''''' 3:1-12 (2012)&lt;br /&gt;
&lt;br /&gt;
==2011==&lt;br /&gt;
*27. '''Insuk Lee*''', Young-Su Seo, Dusica Coltrane, Sohyun Hwang, Taeyun Oh, Edward M. Marcotte, and Pamela C. Ronald. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. '''''PNAS''''' 108(45):18548-53 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/22042862 pubmed]  [[media:PNAS-2011-Lee-18548-53.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*26. Sohyun Hwang, Seung Y. Rhee, Edward M. Marcotte, and '''Insuk Lee'''. Systematic prediction of candidate gene function associated to phenotype traits using the probabilistic functional gene network of Arabidopsis thaliana. '''''Nature Protocols''''' 6:1429-1442 (2011) [[media:2011.08.25.online.nprot.2011.372.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*25. '''Insuk Lee''', Probabilistic functional gene societies. '''''Progress in Biophysics and Molecular Biology''''' 106:435-442 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21281658 pubmed] [[media:Publications_023_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*24. '''Insuk Lee*''', U. Martin Blom, Peggy I. Wang, Jung Eun Shim, and Edward M. Marcotte. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. '''''Genome Research''''' 21:1109-1121 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21536720 pubmed] [[media:Publications_025_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*23. Young-Su Seo, Mawsheng Chern, Laura E. Bartley, Muho Han, Ki-Hong Jung, '''Insuk Lee''', Harkamal Walia, Todd Richter, Xia Xu, Peijian Cao, Wei Bai, Rajeshwari Ramanan, Fawn Amonpant, Loganathan Arul, Patrick E. Canlas, Randy Ruan, Chang-Jin Park, Xuewel Chen, Sohyun Hwang, Jong-Seong Jeon, and Pamela C. Ronald. Towards establishment of a rice stress response interactome. '''''PLoS Genetics''''' 7(4):e1002020 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21533176 pubmed] [[media:Publications_024.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2010==&lt;br /&gt;
*22. Ni Huang, '''Insuk Lee''', Edward M.Marcotte, Matthew E.Hurles, Characterising and predicting haploinsufficiency in the human genome, '''''PLoS Genet.''''' 6(10):e1001154(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20976243 pubmed]  [[media:Publications_022.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*21. Eiru Kim, Jaeyoon Shin and '''Insuk Lee''', Assessment of effectiveness of the network-guided genetic screen, '''''Mol Biosyst.''''' 6:1803-1806(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20697632 pubmed]  [[media:Publications_021.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*20. '''Insuk Lee*''', Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte, Predicting genetic modifier loci using functional gene networks, '''''Genome Research''''', 20:1143-1153(2010) . co-corresponding author  [http://www.ncbi.nlm.nih.gov/pubmed/20538624 pubmed]  [[media:Publications_020.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*19. '''Insuk Lee*''', Bindu Ambaru, Pranjali Thakkar, Edward M Marcotte, Seung Y Rhee, Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana, '''''Nature Biotechnology''''', 28:149-156 (2010).  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20118918 pubmed]  [[media:Publications_019.pdf|pdf]]&lt;br /&gt;
==2009==&lt;br /&gt;
*18. '''Insuk Lee''' and Edward Marcotte.  Effects of functional bias on supervised learning of a gene network model. '''In Methods in Molecular Biology''' Vol. 541, Computational Systems Biology (ed. R. Ireton, K. Montgomery, J. McDermott, R. Samudrala, R. Bumgarner).  Totowa, THE HUMANA.  p463-475 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19381535 pubmed]  [[media:Publications_018.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*17. Zhihua Li, '''Insuk Lee''', Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte, Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, '''''PLoS Biology''''', 7(10):e1000213 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19806183 pubmed]  [[media:Publications_017.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*16. Ryan S. Gray, Philip B. Abitua, Bogdan J. Wlodarczyk, Heather L. Szabo-Rogers, Otis Blanchard, '''Insuk Lee''', Greg S. Weiss, Karen J. Liu, Edward M. Marcotte, John B. Wallingford, Richard H. Finnell.  The planar cell polarity effector protein Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, '''''Nature Cell Biology''''' 11:1225-32 (2009) '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/19767740 pubmed]  [[media:Publications_016.pdf|pdf]]&lt;br /&gt;
==2008==&lt;br /&gt;
*15. Ben Lehner and '''Insuk Lee'''.  Network-guided genetic screening: building, testing, and using gene networks to predict gene function.  '''''Brief. Funct. Genomic. Proteomic'''''. 7:217-227 (2008). '''''co-corresponding author'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18445637 pubmed]  [[media:Publications_015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*14. '''Insuk Lee''' and Edward Marcotte.  Integrating Functional Genomics Data. '''In Methods in Molecular Biology''' Vol. 453, Bioinformatics Vol. II (ed. Jonathan Keith).  Totowa, THE HUMANA.  p267-278 (2008)  [http://www.ncbi.nlm.nih.gov/pubmed/18712309 pubmed]  [[media:Publications_014.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*13. '''Insuk Lee''', Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte. A single gene network accurately predicts phenotypic effects of gene perturbation in ''Caenorhabditis elegans''.  '''''Nature Genetics''''' 40:181-188 (2008). '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18223650 pubmed]  [[media:Publications_013.pdf|pdf]]&amp;lt;br /&amp;gt;This paper was the subject of the following commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and minireviews (Von Stetina S. E. and Mango S. E.  Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226.  Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model.  BioEssays 30:707)&lt;br /&gt;
==Before 2007==&lt;br /&gt;
*12. '''Insuk Lee''', Rammohan Narayanaswamy, Edward Marcotte.  Bioinformatic prediction of yeast gene function.  '''In METHOD IN MICROBIOLOGY''' Vol. 36, Yeast Gene Analysis (ed. Ian Stansfield and Mike Stark), Elsevier.  p597-628, (2007)  [[media:Publications_012.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*11. Kris McGary, '''Insuk Lee''', Edward M. Marcotte.  Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes.  '''''Genome Biology''''' 8:R258 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/18053250 pubmed]  [[media:Publications_011.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*10. '''Insuk Lee''', Zhihua Li, and Edward M. Marcotte.  An improved bias-reduced probabilistic functional gene network of baker’s yeast ''Saccharomyces cerevisiae''.  '''''PLOS One''''' 2:e988 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17912365 pubmed]  [[media:Publications_010.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*9. Hart G. Traver, '''Insuk Lee''', Edward Marcotte.  A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. '''''BMC Bioinformatic''''' 8:236 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17605818  pubmed]  [[media:Publications_009.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*8. Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward Marcotte.  A Probabilistic functional network of yeast genes. '''''Science''''' 306:1555-1558, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15567862 pubmed]  [[media:Publications_008.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*7. Bork, P., Jensen, L.J., Von Mering, C., Ramani, A.K., '''Lee I''', Marcotte, E.M. Protein interaction networks from yeast to human.  '''''Curr. Opin. Struct. Biol.''''' 14:292-9, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15193308 pubmed]  [[media:Publications_007.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*6. '''Insuk Lee''' and Rasika Harshey. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. '''''Nucleic Acids Res.''''' 31:4531-4540, (2003)&lt;br /&gt;
&lt;br /&gt;
*5. '''Insuk Lee''' and Rasika Harshey.  The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. '''''J. Mol. Biol.'''''  330:261-275, (2003)&lt;br /&gt;
&lt;br /&gt;
*4. '''Insuk Lee''' and Rasika Harshey.  Importance of the conserved CA dinucleotide at Mu termini. '''''J. Mol. Biol.'''''  314:433-444, (2001)&lt;br /&gt;
&lt;br /&gt;
*3. Xue, Y., Bai, X., '''Lee, I.''', Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. '''''Mol. Cell. Biol.''''' 20:4006-4015, (2000)&lt;br /&gt;
&lt;br /&gt;
*2. Liu, J., Gong, Y., Prakash, O., Wen, L., '''Lee, I'''., Huang J.,-K., and Krishnamoorthi, R.  NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family.  '''''Protein Science'''''  7:132-141, (1998) &lt;br /&gt;
&lt;br /&gt;
*1. Wen, L., '''Lee, I.''', Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R.  Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. '''''Biochem. Biophys. Res. Commun.''''' 207:897-902, (1995)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2360</id>
		<title>Publications</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Publications&amp;diff=2360"/>
		<updated>2012-04-12T09:25:26Z</updated>

		<summary type="html">&lt;p&gt;Smyang: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{#widget:AddHtml&lt;br /&gt;
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}}&lt;br /&gt;
* '*' co-corresponding authorship&lt;br /&gt;
==2012==&lt;br /&gt;
*29. Lee Chae, '''Insuk Lee*''', Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. '''''Current Opinion in Plant Biology''''' 15:1-8 (2012)&lt;br /&gt;
*28. Stephanie M. Quanbeck, Libuse Brachova, Alexis A. Campbell, Xin Guan, Ann Perera, Kun He, Seung Y. Rhee, Preeti Bais, Julie A. Dickerson, Philip Dixon, Gert Wohlgemuth, Oliver Fiehn, Lenore Barken, Iris Lange, B. Markus Lange, '''Insuk Lee''', Diego Cortes, Carolina Salazar, Joel Shuman, Vladimir Shulaev, David V. Huhman, Lloyd W. Sumner, Mary R. Roth, Ruth Welti, Hilal Ilarslan, Eve S. Wurtele, and Basil J. Nikolau. Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. '''''Frontiers in Plant Science''''' 3:1-12 (2012)&lt;br /&gt;
&lt;br /&gt;
==2011==&lt;br /&gt;
*27. '''Insuk Lee*''', Young-Su Seo, Dusica Coltrane, Sohyun Hwang, Taeyun Oh, Edward M. Marcotte, and Pamela C. Ronald. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. '''''PNAS''''' 108(45):18548-53 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/22042862 pubmed]  [[media:PNAS-2011-Lee-18548-53.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*26. Sohyun Hwang, Seung Y. Rhee, Edward M. Marcotte, and '''Insuk Lee'''. Systematic prediction of candidate gene function associated to phenotype traits using the probabilistic functional gene network of Arabidopsis thaliana. '''''Nature Protocols''''' 6:1429-1442 (2011) [[media:2011.08.25.online.nprot.2011.372.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*25. '''Insuk Lee''', Probabilistic functional gene societies. '''''Progress in Biophysics and Molecular Biology''''' 106:435-442 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21281658 pubmed] [[media:Publications_023_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*24. '''Insuk Lee*''', U. Martin Blom, Peggy I. Wang, Jung Eun Shim, and Edward M. Marcotte. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. '''''Genome Research''''' 21:1109-1121 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21536720 pubmed] [[media:Publications_025_n.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*23. Young-Su Seo, Mawsheng Chern, Laura E. Bartley, Muho Han, Ki-Hong Jung, '''Insuk Lee''', Harkamal Walia, Todd Richter, Xia Xu, Peijian Cao, Wei Bai, Rajeshwari Ramanan, Fawn Amonpant, Loganathan Arul, Patrick E. Canlas, Randy Ruan, Chang-Jin Park, Xuewel Chen, Sohyun Hwang, Jong-Seong Jeon, and Pamela C. Ronald. Towards establishment of a rice stress response interactome. '''''PLoS Genetics''''' 7(4):e1002020 (2011)  [http://www.ncbi.nlm.nih.gov/pubmed/21533176 pubmed] [[media:Publications_024.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
==2010==&lt;br /&gt;
*22. Ni Huang, '''Insuk Lee''', Edward M.Marcotte, Matthew E.Hurles, Characterising and predicting haploinsufficiency in the human genome, '''''PLoS Genet.''''' 6(10):e1001154(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20976243 pubmed]  [[media:Publications_022.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*21. Eiru Kim, Jaeyoon Shin and '''Insuk Lee''', Assessment of effectiveness of the network-guided genetic screen, '''''Mol Biosyst.''''' 6:1803-1806(2010)  [http://www.ncbi.nlm.nih.gov/pubmed/20697632 pubmed]  [[media:Publications_021.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*20. '''Insuk Lee*''', Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte, Predicting genetic modifier loci using functional gene networks, '''''Genome Research''''', 20:1143-1153(2010) . co-corresponding author  [http://www.ncbi.nlm.nih.gov/pubmed/20538624 pubmed]  [[media:Publications_020.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*19. '''Insuk Lee*''', Bindu Ambaru, Pranjali Thakkar, Edward M Marcotte, Seung Y Rhee, Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana, '''''Nature Biotechnology''''', 28:149-156 (2010).  ''co-corresponding author''  [http://www.ncbi.nlm.nih.gov/pubmed/20118918 pubmed]  [[media:Publications_019.pdf|pdf]]&lt;br /&gt;
==2009==&lt;br /&gt;
*18. '''Insuk Lee''' and Edward Marcotte.  Effects of functional bias on supervised learning of a gene network model. '''In Methods in Molecular Biology''' Vol. 541, Computational Systems Biology (ed. R. Ireton, K. Montgomery, J. McDermott, R. Samudrala, R. Bumgarner).  Totowa, THE HUMANA.  p463-475 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19381535 pubmed]  [[media:Publications_018.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*17. Zhihua Li, '''Insuk Lee''', Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte, Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, '''''PLoS Biology''''', 7(10):e1000213 (2009)  [http://www.ncbi.nlm.nih.gov/pubmed/19806183 pubmed]  [[media:Publications_017.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*16. Ryan S. Gray, Philip B. Abitua, Bogdan J. Wlodarczyk, Heather L. Szabo-Rogers, Otis Blanchard, '''Insuk Lee''', Greg S. Weiss, Karen J. Liu, Edward M. Marcotte, John B. Wallingford, Richard H. Finnell.  The planar cell polarity effector protein Fuz is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, '''''Nature Cell Biology''''' 11:1225-32 (2009) '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/19767740 pubmed]  [[media:Publications_016.pdf|pdf]]&lt;br /&gt;
==2008==&lt;br /&gt;
*15. Ben Lehner and '''Insuk Lee'''.  Network-guided genetic screening: building, testing, and using gene networks to predict gene function.  '''''Brief. Funct. Genomic. Proteomic'''''. 7:217-227 (2008). '''''co-corresponding author'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18445637 pubmed]  [[media:Publications_015.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*14. '''Insuk Lee''' and Edward Marcotte.  Integrating Functional Genomics Data. '''In Methods in Molecular Biology''' Vol. 453, Bioinformatics Vol. II (ed. Jonathan Keith).  Totowa, THE HUMANA.  p267-278 (2008)  [http://www.ncbi.nlm.nih.gov/pubmed/18712309 pubmed]  [[media:Publications_014.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*13. '''Insuk Lee''', Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte. A single gene network accurately predicts phenotypic effects of gene perturbation in ''Caenorhabditis elegans''.  '''''Nature Genetics''''' 40:181-188 (2008). '''''*Cover story'''''  [http://www.ncbi.nlm.nih.gov/pubmed/18223650 pubmed]  [[media:Publications_013.pdf|pdf]]&amp;lt;br /&amp;gt;This paper was the subject of the following commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and minireviews (Von Stetina S. E. and Mango S. E.  Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226.  Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model.  BioEssays 30:707)&lt;br /&gt;
==Before 2007==&lt;br /&gt;
*12. '''Insuk Lee''', Rammohan Narayanaswamy, Edward Marcotte.  Bioinformatic prediction of yeast gene function.  '''In METHOD IN MICROBIOLOGY''' Vol. 36, Yeast Gene Analysis (ed. Ian Stansfield and Mike Stark), Elsevier.  p597-628, (2007)  [[media:Publications_012.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*11. Kris McGary, '''Insuk Lee''', Edward M. Marcotte.  Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes.  '''''Genome Biology''''' 8:R258 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/18053250 pubmed]  [[media:Publications_011.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*10. '''Insuk Lee''', Zhihua Li, and Edward M. Marcotte.  An improved bias-reduced probabilistic functional gene network of baker’s yeast ''Saccharomyces cerevisiae''.  '''''PLOS One''''' 2:e988 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17912365 pubmed]  [[media:Publications_010.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*9. Hart G. Traver, '''Insuk Lee''', Edward Marcotte.  A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. '''''BMC Bioinformatic''''' 8:236 (2007)  [http://www.ncbi.nlm.nih.gov/pubmed/17605818  pubmed]  [[media:Publications_009.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*8. Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward Marcotte.  A Probabilistic functional network of yeast genes. '''''Science''''' 306:1555-1558, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15567862 pubmed]  [[media:Publications_008.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*7. Bork, P., Jensen, L.J., Von Mering, C., Ramani, A.K., '''Lee I''', Marcotte, E.M. Protein interaction networks from yeast to human.  '''''Curr. Opin. Struct. Biol.''''' 14:292-9, (2004) [http://www.ncbi.nlm.nih.gov/pubmed/15193308 pubmed]  [[media:Publications_007.pdf|pdf]]&lt;br /&gt;
&lt;br /&gt;
*6. '''Insuk Lee''' and Rasika Harshey. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. '''''Nucleic Acids Res.''''' 31:4531-4540, (2003)&lt;br /&gt;
&lt;br /&gt;
*5. '''Insuk Lee''' and Rasika Harshey.  The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. '''''J. Mol. Biol.'''''  330:261-275, (2003)&lt;br /&gt;
&lt;br /&gt;
*4. '''Insuk Lee''' and Rasika Harshey.  Importance of the conserved CA dinucleotide at Mu termini. '''''J. Mol. Biol.'''''  314:433-444, (2001)&lt;br /&gt;
&lt;br /&gt;
*3. Xue, Y., Bai, X., '''Lee, I.''', Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. '''''Mol. Cell. Biol.''''' 20:4006-4015, (2000)&lt;br /&gt;
&lt;br /&gt;
*2. Liu, J., Gong, Y., Prakash, O., Wen, L., '''Lee, I'''., Huang J.,-K., and Krishnamoorthi, R.  NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family.  '''''Protein Science'''''  7:132-141, (1998) &lt;br /&gt;
&lt;br /&gt;
*1. Wen, L., '''Lee, I.''', Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R.  Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. '''''Biochem. Biophys. Res. Commun.''''' 207:897-902, (1995)&lt;/div&gt;</summary>
		<author><name>Smyang</name></author>
		
	</entry>
	<entry>
		<id>https://netbiolab.org/wiki/index.php?title=Widget:AddHtml&amp;diff=2359</id>
		<title>Widget:AddHtml</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Widget:AddHtml&amp;diff=2359"/>
		<updated>2012-04-12T09:24:11Z</updated>

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		<author><name>Smyang</name></author>
		
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		<id>https://netbiolab.org/wiki/index.php?title=Widget:AddHtml&amp;diff=2358</id>
		<title>Widget:AddHtml</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Widget:AddHtml&amp;diff=2358"/>
		<updated>2012-04-12T09:22:47Z</updated>

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		<id>https://netbiolab.org/wiki/index.php?title=Widget:AddHtml&amp;diff=2357</id>
		<title>Widget:AddHtml</title>
		<link rel="alternate" type="text/html" href="https://netbiolab.org/wiki/index.php?title=Widget:AddHtml&amp;diff=2357"/>
		<updated>2012-04-12T09:22:11Z</updated>

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