Network Biology Lab - Recent changes [en]

Journal Club

Kaisir — Thu, 15 Oct 2026 09:39:18 GMT

Software

Administrator — Mon, 12 Oct 2026 02:49:44 GMT

← Older revision		Revision as of 11:49, 12 October 2026
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	=='''Single-cell Biology'''==		=='''Single-cell Biology'''==
	[[File:~~ScHumanNet github banner~~.~~final.jpg~~\|150px\|link=https://github.com/netbiolab/scHumanNet]]		[[File:ScHumanNet_logo.png\|150px\|link=https://github.com/netbiolab/scHumanNet]]
	'''scHumanNet''': Cell-type-specific functional gene networks using single-cell RNA-sequencing data		'''scHumanNet''': Cell-type-specific functional gene networks using single-cell RNA-sequencing data

File:ScHumanNet logo.png

Administrator — Mon, 12 Oct 2026 02:48:43 GMT

Administrator uploaded File:ScHumanNet logo.png

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Journal Club

Kaisir — Wed, 07 Oct 2026 12:08:19 GMT

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People

Il1001 — Sun, 27 Sep 2026 22:46:34 GMT

Alumni

← Older revision		Revision as of 07:46, 28 September 2026
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	**13. Nayeon Kim (2019.9-2025.2), PhD; currently Postdoc Fellow at KAIST InnoCORE Research Group (과학기술원 InnoCORE 초거대언어모델 혁신 연구단, 박사후연구원)		**13. Nayeon Kim (2019.9-2025.2), PhD; currently Postdoc Fellow at KAIST InnoCORE Research Group (과학기술원 InnoCORE 초거대언어모델 혁신 연구단, 박사후연구원)
	**14. Jun Hyung Cha (2020.9-2026.2), PhD; currently Postdoc Fellow at Harvard University, [https://huttenhower.sph.harvard.edu/home/ Prof. Heuttenhower Lab] 미국 하버드대학교 박사후연구원)		**14. Jun Hyung Cha (2020.9-2026.2), PhD; currently Postdoc Fellow at Harvard University, [https://huttenhower.sph.harvard.edu/home/ Prof. Heuttenhower Lab] 미국 하버드대학교 박사후연구원)
	**15. Ilseok Choi (2020.9-2026.8), PhD; currently Postdoc Fellow at Yonsei University, ~~(연세대~~ 박사후연구원)		**15. Ilseok Choi (2020.9-2026.8), PhD; currently Postdoc Fellow at Multiscale Human Microbiome AI Research Center, Yonsei University (연세대학교 멀티스케일 인체 마이크로바이옴 AI 연구단, 박사후연구원)
	**16. Junyeong Ma (2021.3-2026.9) PhD; currently Postdoc Fellow at Yonsei University, ~~(연세대~~ 박사후연구원)		**16. Junyeong Ma (2021.3-2026.9) PhD; currently Postdoc Fellow at Multiscale Human Microbiome AI Research Center, Yonsei University (연세대학교 멀티스케일 인체 마이크로바이옴 AI 연구단, 박사후연구원)

	*'''Former Graduate Students (Master's degree)'''		*'''Former Graduate Students (Master's degree)'''

Publications

Il1001 — Sat, 26 Sep 2026 03:44:57 GMT

2026 (14)

← Older revision		Revision as of 12:44, 26 September 2026
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	*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''		*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''
	<br>		<br>
	*134. LoGoPPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision'''''		*134. LoGoPPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.753039v1 bioRxiv]
	<br>		<br>
	*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''		*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''
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	131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026 May;50(3):435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]		131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026 May;50(3):435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]
	<br>		<br>
	130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]		130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]]
	<br>		<br>
	129. '''Jungyeon Kim''', Nayeon Kim, Jun Hyung Cha, Junyeong Ma, and '''Insuk Lee**''', Comprehensive benchmarking of metagenomic binning tools reveals key factors for improved genome recovery, '''''Nature Communications''''' 2026 Apr 14;17(1):3467 [https://pubmed.ncbi.nlm.nih.gov/41980943/ pubmed] [https://www.clearskyscience.com/en/10.1038/s41467-026-71521-w/?utm_source=postmark&utm_medium=email&utm_campaign=standard_notification Accessible summary] by Clear Sky Science		129. '''Jungyeon Kim''', Nayeon Kim, Jun Hyung Cha, Junyeong Ma, and '''Insuk Lee**''', Comprehensive benchmarking of metagenomic binning tools reveals key factors for improved genome recovery, '''''Nature Communications''''' 2026 Apr 14;17(1):3467 [https://pubmed.ncbi.nlm.nih.gov/41980943/ pubmed] [https://www.clearskyscience.com/en/10.1038/s41467-026-71521-w/?utm_source=postmark&utm_medium=email&utm_campaign=standard_notification Accessible summary] by Clear Sky Science

People

Il1001 — Tue, 22 Sep 2026 04:16:24 GMT

Scientists & Research Staff

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	\|width=160px; align="center"\|[[People:IS_Choi\|<big>'''Ilseok Choi'''</big>]]		\|width=160px; align="center"\|[[People:IS_Choi\|<big>'''Ilseok Choi'''</big>]]
	\|width=160px; align="center"\|[[People:Junyeong_Ma\|<big>'''Junyeong Ma'''</big>]]		\|width=160px; align="center"\|[[People:Junyeong_Ma\|<big>'''Junyeong Ma'''</big>]]
	\|width=160px; align="center"\|[[People:Hanjune_Kim\|<big>'''~~Hanjune~~ Kim'''</big>]]		\|width=160px; align="center"\|[[People:Hanjune_Kim\|<big>'''Han-June Kim'''</big>]]
	\|width=160px; align="center"\|[[People:Euijeong_Sung\|<big>'''Euijeong Sung'''</big>]]		\|width=160px; align="center"\|[[People:Euijeong_Sung\|<big>'''Euijeong Sung'''</big>]]
	\|width=160px; align="center"\|[[People:Sehun_Ahn\|<big>'''Sehun Ahn'''</big>]]		\|width=160px; align="center"\|[[People:Sehun_Ahn\|<big>'''Sehun Ahn'''</big>]]

Publications

Il1001 — Tue, 22 Sep 2026 03:30:21 GMT

2026 (14)

← Older revision		Revision as of 12:30, 22 September 2026
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	*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]		*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]
	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (13)==		==2026 (14)==
			*140. Human body-site-stratified fungal genomic catalogs enhancing human mycobiome analysis '''''Submitted''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.752968v1 bioRxiv]
			<br>
	*139. A dog gut microbial genome catalog reveals human-shared microbial lineages relevant to One Health '''''Submitted'''''		*139. A dog gut microbial genome catalog reveals human-shared microbial lineages relevant to One Health '''''Submitted'''''
	<br>		<br>

← Older revision		Revision as of 13:16, 22 September 2026
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	\|width=160px; align="center"\|[[People:IS_Choi\|<big>'''Ilseok Choi'''</big>]]		\|width=160px; align="center"\|[[People:IS_Choi\|<big>'''Ilseok Choi'''</big>]]
	\|width=160px; align="center"\|[[People:Junyeong_Ma\|<big>'''Junyeong Ma'''</big>]]		\|width=160px; align="center"\|[[People:Junyeong_Ma\|<big>'''Junyeong Ma'''</big>]]
	\|width=160px; align="center"\|[[People:Hanjune_Kim\|<big>'''~~Hanjune~~ Kim'''</big>]]		\|width=160px; align="center"\|[[People:Hanjune_Kim\|<big>'''Han-June Kim'''</big>]]
	\|width=160px; align="center"\|[[People:Euijeong_Sung\|<big>'''Euijeong Sung'''</big>]]		\|width=160px; align="center"\|[[People:Euijeong_Sung\|<big>'''Euijeong Sung'''</big>]]
	\|width=160px; align="center"\|[[People:Sehun_Ahn\|<big>'''Sehun Ahn'''</big>]]		\|width=160px; align="center"\|[[People:Sehun_Ahn\|<big>'''Sehun Ahn'''</big>]]