Publications - Revision history

Il1001: /* 2026 (14) */

2026-10-24T06:41:36Z

2026 (14)

← Older revision		Revision as of 15:41, 24 October 2026
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	*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]		*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]
	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (14)==		==2026 (15)==
	*141. Metacell pretraining improves perturbation response representations in single-cell foundation models. '''''Submitted'''''		*141. Metacell pretraining improves perturbation response representations in single-cell foundation models. '''''Submitted'''''
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Il1001: /* 2026 (14) */

2026-10-24T06:37:52Z

2026 (14)

← Older revision		Revision as of 15:37, 24 October 2026
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	*139. A dog gut microbial genome catalog reveals human-shared microbial lineages relevant to One Health '''''Submitted'''''		*139. A dog gut microbial genome catalog reveals human-shared microbial lineages relevant to One Health '''''Submitted'''''
	<br>		<br>
	*138. Colorectal cancer surgery reshapes the gut microbiome with enterotype-associated metabolic dependencies '''''~~Submitted~~'''''		*138. Colorectal cancer surgery reshapes the gut microbiome with enterotype-associated metabolic dependencies '''''Under Revision'''''
	<br>		<br>
	*137. Ectopic oral bacteria in the gut are associated with metformin non-response in type 2 diabetes '''''Submitted'''''		*137. Ectopic oral bacteria in the gut are associated with metformin non-response in type 2 diabetes '''''Submitted'''''

Il1001: /* 2026 (14) */

2026-10-24T06:37:01Z

2026 (14)

← Older revision		Revision as of 15:37, 24 October 2026
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	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (14)==		==2026 (14)==
	*141. Metacell pretraining improves perturbation response representations in single-cell foundation models. '''''Submitted''''' ~~[https://www.biorxiv.org/content/10.64898/2026.09.20.752968v1 bioRxiv]~~		*141. Metacell pretraining improves perturbation response representations in single-cell foundation models. '''''Submitted'''''
	<br>		<br>
	*140. Human body-site-stratified fungal genomic catalogs enhancing human mycobiome analysis '''''Submitted''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.752968v1 bioRxiv]		*140. Human body-site-stratified fungal genomic catalogs enhancing human mycobiome analysis '''''Submitted''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.752968v1 bioRxiv]

Il1001 at 06:36, 24 October 2026

2026-10-24T06:36:44Z

← Older revision		Revision as of 15:36, 24 October 2026
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	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (14)==		==2026 (14)==
			*141. Metacell pretraining improves perturbation response representations in single-cell foundation models. '''''Submitted''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.752968v1 bioRxiv]
			<br>
	*140. Human body-site-stratified fungal genomic catalogs enhancing human mycobiome analysis '''''Submitted''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.752968v1 bioRxiv]		*140. Human body-site-stratified fungal genomic catalogs enhancing human mycobiome analysis '''''Submitted''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.752968v1 bioRxiv]
	<br>		<br>

Il1001: /* 2026 (14) */

2026-09-26T03:44:57Z

2026 (14)

← Older revision		Revision as of 12:44, 26 September 2026
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	*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''		*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''
	<br>		<br>
	134. ~~'''Hae Been Lee''', Junyeoung Ma, Han-June Kim, Kyungwoo Song, '''Insuk Lee**''',~~ LoGoPPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.753039v1 bioRxiv]		*134. LoGoPPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.753039v1 bioRxiv]
	<br>		<br>
	*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''		*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''

Il1001: /* 2026 (14) */

2026-09-26T03:44:03Z

2026 (14)

← Older revision		Revision as of 12:44, 26 September 2026
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	*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''		*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''
	<br>		<br>
	*134. LoGoPPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.753039v1 bioRxiv]		134. '''Hae Been Lee''', Junyeoung Ma, Han-June Kim, Kyungwoo Song, '''Insuk Lee**''', LoGoPPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.753039v1 bioRxiv]
	<br>		<br>
	*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''		*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''

Il1001: /* 2026 (14) */

2026-09-26T03:42:04Z

2026 (14)

← Older revision		Revision as of 12:42, 26 September 2026
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	*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''		*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''
	<br>		<br>
	*134. LoGoPPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision'''''		*134. LoGoPPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.753039v1 bioRxiv]
	<br>		<br>
	*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''		*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''
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	131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026 May;50(3):435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]		131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026 May;50(3):435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]
	<br>		<br>
	130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]		130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]]
	<br>		<br>
	129. '''Jungyeon Kim''', Nayeon Kim, Jun Hyung Cha, Junyeong Ma, and '''Insuk Lee**''', Comprehensive benchmarking of metagenomic binning tools reveals key factors for improved genome recovery, '''''Nature Communications''''' 2026 Apr 14;17(1):3467 [https://pubmed.ncbi.nlm.nih.gov/41980943/ pubmed] [https://www.clearskyscience.com/en/10.1038/s41467-026-71521-w/?utm_source=postmark&utm_medium=email&utm_campaign=standard_notification Accessible summary] by Clear Sky Science		129. '''Jungyeon Kim''', Nayeon Kim, Jun Hyung Cha, Junyeong Ma, and '''Insuk Lee**''', Comprehensive benchmarking of metagenomic binning tools reveals key factors for improved genome recovery, '''''Nature Communications''''' 2026 Apr 14;17(1):3467 [https://pubmed.ncbi.nlm.nih.gov/41980943/ pubmed] [https://www.clearskyscience.com/en/10.1038/s41467-026-71521-w/?utm_source=postmark&utm_medium=email&utm_campaign=standard_notification Accessible summary] by Clear Sky Science

Il1001: /* 2026 (14) */

2026-09-22T03:30:21Z

2026 (14)

← Older revision		Revision as of 12:30, 22 September 2026
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	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (14)==		==2026 (14)==
	*140. Human body-site-stratified fungal genomic catalogs enhancing human mycobiome analysis '''''Submitted'''''		*140. Human body-site-stratified fungal genomic catalogs enhancing human mycobiome analysis '''''Submitted''''' [https://www.biorxiv.org/content/10.64898/2026.09.20.752968v1 bioRxiv]
	<br>		<br>
	*139. A dog gut microbial genome catalog reveals human-shared microbial lineages relevant to One Health '''''Submitted'''''		*139. A dog gut microbial genome catalog reveals human-shared microbial lineages relevant to One Health '''''Submitted'''''

Il1001: /* 2026 (13) */

2026-09-20T11:27:19Z

2026 (13)

← Older revision		Revision as of 20:27, 20 September 2026
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	*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]		*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]
	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (13)==		==2026 (14)==
			*140. Human body-site-stratified fungal genomic catalogs enhancing human mycobiome analysis '''''Submitted'''''
			<br>
	*139. A dog gut microbial genome catalog reveals human-shared microbial lineages relevant to One Health '''''Submitted'''''		*139. A dog gut microbial genome catalog reveals human-shared microbial lineages relevant to One Health '''''Submitted'''''
	<br>		<br>

Il1001: /* 2026 (13) */

2026-09-16T21:38:48Z

2026 (13)

← Older revision		Revision as of 06:38, 17 September 2026
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	*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''		*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Under Revision'''''
	<br>		<br>
	*134. ~~LoGoBERT-PPI~~ enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision'''''		*134. LoGoPPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Revision'''''
	<br>		<br>
	*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''		*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''