Publications - Revision history

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2026-08-05T09:13:54Z

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	*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]		*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]
	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (11)==		==2026 (12)==
			*138. Colorectal cancer surgery reshapes the gut microbiome with enterotype-associated metabolic dependencies '''''Submitted'''''
			<br>
	*137. Ectopic oral bacteria in the gut are associated with metformin non-response in type 2 diabetes '''''Submitted'''''		*137. Ectopic oral bacteria in the gut are associated with metformin non-response in type 2 diabetes '''''Submitted'''''
	<br>		<br>

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2026-07-28T14:56:23Z

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	*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]		*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]
	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (10)==		==2026 (11)==
			*137. Ectopic oral bacteria in the gut are associated with metformin non-response in type 2 diabetes '''''Submitted'''''
			<br>
	*136. Systemic inflammation-associated oral bacterial and functional signatures are linked to unfavorable treatment response in rheumatoid arthritis '''''Submitted'''''		*136. Systemic inflammation-associated oral bacterial and functional signatures are linked to unfavorable treatment response in rheumatoid arthritis '''''Submitted'''''
	<br>		<br>

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2026-07-22T17:14:58Z

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← Older revision		Revision as of 02:14, 23 July 2026
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	*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''		*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''
	<br>		<br>
	*132. ~~Incorporating viral genome binning in a~~ mouse gut virome ~~catalog enables accurate age prediction~~, '''''Nature Communications''''' 2026 ~~Accepted~~		132. '''Han-June Kim''', Nayeon Kim, Jun Hyung Cha, Wonjong Kim, Junyeong Ma, Jungyeon Kim, Yerin Kim, Sunmo Yang, Sanguine Byun, Eunjung Lee, Martin Hemberg, '''Insuk Lee**''', A genomic catalog of the mouse gut virome reveals features associated with ageing, '''''Nature Communications''''' 2026 Jul 21. doi: 10.1038/s41467-026-75836-6. Online ahead of print [https://pubmed.ncbi.nlm.nih.gov/42481527/ pubmed]
	<br>		<br>
	131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026 May;50(3):435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]		131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026 May;50(3):435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]

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2026-07-21T06:36:10Z

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← Older revision		Revision as of 15:36, 21 July 2026
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	*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]		*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]
	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (9)==		==2026 (10)==
			*136. Systemic inflammation-associated oral bacterial and functional signatures are linked to unfavorable treatment response in rheumatoid arthritis '''''Submitted'''''
			<br>
	*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Submitted'''''		*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Submitted'''''
	<br>		<br>

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2026-07-06T14:59:41Z

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← Older revision		Revision as of 23:59, 6 July 2026
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	*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]		*[https://pubmed.ncbi.nlm.nih.gov/?term=Insuk+Lee%5BAuthor%5D&sort=date Pubmed article list]
	* '' First authors; '*' Corresponding authors;		* '' First authors; '*' Corresponding authors;
	==2026 (8)==		==2026 (9)==
			*135. Single-cell systems analysis identifies divergent cell-type-specific interferon programs underlying DMARD response in rheumatoid arthritis '''''Submitted'''''
			<br>
	*134. LoGoBERT-PPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Review'''''		*134. LoGoBERT-PPI enables fast and accurate protein–protein interaction mapping at scale '''''Under Review'''''
	<br>		<br>
	*133. ~~Incorporating viral genome binning~~ in ~~a mouse gut virome catalog enables accurate age prediction~~, '''''~~Nature Communications~~''''' ~~2026 Accepted~~		*133. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''
	<br>		<br>
	*132. ~~DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells~~ in ~~the lung~~, '''''~~Under Revision~~'''''		*132. Incorporating viral genome binning in a mouse gut virome catalog enables accurate age prediction, '''''Nature Communications''''' 2026 Accepted
	<br>		<br>
	131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026 May;50(3):435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]		131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026 May;50(3):435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]

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2026-06-23T08:14:13Z

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Show changes

Administrator at 19:43, 12 June 2026

2026-06-12T19:43:06Z

← Older revision		Revision as of 04:43, 13 June 2026
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	68. '''Shim JE''', Bang C, Yang S, Lee T, Hwang S, Kim CY, Singh-Blom M, Marcotte E, '''Lee I**''', GWAB: a web server for the network-based boosting of human genome-wide association data, '''''Nucleic Acids Research''''' 2017 July 3; 45 (W1):W154-W161; [https://www.ncbi.nlm.nih.gov/pubmed/28449091 pubmed]		68. '''Shim JE''', Bang C, Yang S, Lee T, Hwang S, Kim CY, Singh-Blom M, Marcotte E, '''Lee I**''', GWAB: a web server for the network-based boosting of human genome-wide association data, '''''Nucleic Acids Research''''' 2017 July 3; 45 (W1):W154-W161; [https://www.ncbi.nlm.nih.gov/pubmed/28449091 pubmed]
	<br>		<br>
	67. '''Kim E, Lee I**''', Network-Based Gene Function Prediction in Mouse and Other Model Vertebrates Using MouseNet Server, '''''Methods in Molecular Biology''''' 2017 April 28; 1611:183-198; [https://www.ncbi.nlm.nih.gov/pubmed/28451980 pubmed] [~~http~~://~~f1000~~.~~com/prime/727562216?bd=1 {{#widget:AddHtml\|content=<img src="http://cdn~~.~~f1000~~.~~com.s3.amazonaws.com~~/~~images~~/~~badges~~/~~badgef1000.gif" alt="Access the recommendation on~~ F1000Prime~~" id="bg" width=70 />}}~~]		67. '''Kim E, Lee I**''', Network-Based Gene Function Prediction in Mouse and Other Model Vertebrates Using MouseNet Server, '''''Methods in Molecular Biology''''' 2017 April 28; 1611:183-198; [https://www.ncbi.nlm.nih.gov/pubmed/28451980 pubmed] [https://archive.connect.h1.co/article/727562216/ F1000Prime Recommended]
	<br>		<br>
	66. '''Shim JE, Lee T, Lee I*''', From sequencing data to gene functions: co-functional network approaches, '''''Animal Cells and Systems''''' 2017 April 15; 20:77-83; [https://www.ncbi.nlm.nih.gov/pubmed/30460054 pubmed]		66. '''Shim JE, Lee T, Lee I*''', From sequencing data to gene functions: co-functional network approaches, '''''Animal Cells and Systems''''' 2017 April 15; 20:77-83; [https://www.ncbi.nlm.nih.gov/pubmed/30460054 pubmed]
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	43. '''Lee I''', Kim E, Marcotte EM*, Modes of Interaction between Individuals Dominate the Topologies of Real World Networks, '''''Plos One''''' 2015 Mar 20;10(3):e0121248 [http://www.ncbi.nlm.nih.gov/pubmed/25793969 Pubmed]		43. '''Lee I''', Kim E, Marcotte EM*, Modes of Interaction between Individuals Dominate the Topologies of Real World Networks, '''''Plos One''''' 2015 Mar 20;10(3):e0121248 [http://www.ncbi.nlm.nih.gov/pubmed/25793969 Pubmed]
	<br>		<br>
	42. '''Kim H''', Jung KW, Maeng S, Chen YL, Shin J, Shim JE, Hwang S, Janbon G, Kim T, Heitman J, Bahn YS, '''Lee I*''', Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans, '''''Scientific Reports''''' 2015 Mar 5;5:8767 [http://www.ncbi.nlm.nih.gov/pubmed/25739925 Pubmed] [http://f1000.com/prime/725377816?bd=1 {{#widget:AddHtml\|content=<img src="http://cdn.f1000.com.s3.amazonaws.com/images/badges/badgef1000.gif" alt="Access the recommendation on F1000Prime" id="bg" width=70 />}}]		42. '''Kim H''', Jung KW, Maeng S, Chen YL, Shin J, Shim JE, Hwang S, Janbon G, Kim T, Heitman J, Bahn YS, '''Lee I*''', Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans, '''''Scientific Reports''''' 2015 Mar 5;5:8767 [http://www.ncbi.nlm.nih.gov/pubmed/25739925 Pubmed]
	<br>		<br>
	41. '''Lee T''', Kim H, '''Lee I**''', Network-assisted crop systems genetics: network inference and integrative analysis, '''''Current Opinion in Plant Biology''''' 2015 Mar 5;5:8767. [http://www.ncbi.nlm.nih.gov/pubmed/25698380 Pubmed]		41. '''Lee T''', Kim H, '''Lee I**''', Network-assisted crop systems genetics: network inference and integrative analysis, '''''Current Opinion in Plant Biology''''' 2015 Mar 5;5:8767. [http://www.ncbi.nlm.nih.gov/pubmed/25698380 Pubmed]

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2026-05-16T07:40:23Z

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← Older revision		Revision as of 16:40, 16 May 2026
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	*132. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''		*132. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''
	<br>		<br>
	131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026;50:435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]		131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026 May;50(3):435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]
	<br>		<br>
	130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]		130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]

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2026-05-16T07:39:49Z

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← Older revision		Revision as of 16:39, 16 May 2026
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	*132. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''		*132. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''
	<br>		<br>
	131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026;50:435-449		131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026;50:435-449 [https://pubmed.ncbi.nlm.nih.gov/42128400/ pubmed]
	<br>		<br>
	130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]		130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]

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2026-05-13T12:54:58Z

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← Older revision		Revision as of 21:54, 13 May 2026
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	*132. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''		*132. DNA-barcoded extracellular vesicles enable the identification and characterization of recipient cells in the lung, '''''Under Revision'''''
	<br>		<br>
	131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee*, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026;50:435-449		131. Eugene Han, Jung Ho Nam, '''Insuk Lee''', Cheol Ryong Ku, Yong-ho Lee**, Metformin beyond Glycemic Control: New Mechanistic Insights and Expanding Therapeutic Horizons, '''''DIABETES & METABOLISM JOURNAL''''' 2026;50:435-449
	<br>		<br>
	130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]		130. Yura Seo, Yoon Dae Han, Linda Bojmar, Kyung-A Kim, Yurin Seo, Taeyul K. Kim, Suho Lee, Yeleem Kim, Hye Bin Choi, Yujin H. Lim, Chae Hyun Kim, Alexander Sandberg, Chuanwen Fan, Pernille Lauritzen, Henrik Molina, Christopher Peralta, Jacob B. Geri, Colin Burdette, Dai Hoon Han, Heon Yung Gee, '''Insuk Lee''', Jeon-Soo Shin, Hyunwook Kim, Leon Li, Gabriel C. Tobias, Inbal Wortzel, Sang Joon Shin, Hyo-Il Jung, Min Goo Lee, Soonmyung Paik, Robert E. Schwartz, Joong Bae Ahn, David Lyden, Han Sang Kim**, Proteomic Profiling of Human Extracellular Vesicles Reveals Diagnostic Biomarkers for Colon Adenocarcinoma, '''''Journal of Extracellular Vesicles''''' 2026 Apr;15(4):e70278 [https://pubmed.ncbi.nlm.nih.gov/41979056/ pubmed]