https://netbiolab.org/wiki/index.php?title=Domain2Pathway_by_Pathway_Specificity_(PS)&feed=atom&action=historyDomain2Pathway by Pathway Specificity (PS) - Revision history2024-03-28T17:51:04ZRevision history for this page on the wikiMediaWiki 1.20.5https://netbiolab.org/wiki/index.php?title=Domain2Pathway_by_Pathway_Specificity_(PS)&diff=4959&oldid=prevIl1001 at 10:33, 10 May 20192019-05-10T10:33:40Z<p></p>
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<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''''Citation''''' : Jung Eun Shim, Ji Hyun Kim, Junha Shin, Ji Eun Lee and Insuk Lee, <del class="diffchange diffchange-inline">Network-based identification of pathway</del>-specific protein domains <del class="diffchange diffchange-inline">and their implications </del>for human diseases (<del class="diffchange diffchange-inline">under review</del>)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''''Citation''''' : Jung Eun Shim, Ji Hyun Kim, Junha Shin, Ji Eun Lee and Insuk Lee, <ins class="diffchange diffchange-inline">Pathway</ins>-specific protein domains <ins class="diffchange diffchange-inline">are predictive </ins>for human diseases<ins class="diffchange diffchange-inline">. PLoS Comput Biol 15</ins>(<ins class="diffchange diffchange-inline">5</ins>)<ins class="diffchange diffchange-inline">:e1007052</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''''Contact Information''''' : Insuk Lee (insuklee[at]yonsei[dot]ac[dot]kr)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''''Contact Information''''' : Insuk Lee (insuklee[at]yonsei[dot]ac[dot]kr)</div></td></tr>
</table>Il1001https://netbiolab.org/wiki/index.php?title=Domain2Pathway_by_Pathway_Specificity_(PS)&diff=4538&oldid=prevShimje at 07:59, 22 September 20172017-09-22T07:59:18Z<p></p>
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<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[https://netbiolab.org/wiki/images/6/68/Ps.zip Source codes and <del class="diffchange diffchange-inline">datafile </del>for PS calculation]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[https://netbiolab.org/wiki/images/6/68/Ps.zip Source codes and <ins class="diffchange diffchange-inline">data files </ins>for PS calculation]</div></td></tr>
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</table>Shimjehttps://netbiolab.org/wiki/index.php?title=Domain2Pathway_by_Pathway_Specificity_(PS)&diff=4536&oldid=prevShimje at 07:27, 22 September 20172017-09-22T07:27:39Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Protein domains are basic functional units of proteins, yet domain-based pathway annotations for proteins are still challenging tasks because many domains are pervasive among diverse pathways.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Protein domains are basic functional units of proteins, yet domain-based pathway annotations for proteins are still challenging tasks because many domains are pervasive among diverse pathways.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Nevertheless, some domains may exist in specific pathways.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Nevertheless, some domains may exist in specific pathways.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>We therefore developed a network-based scoring scheme to quantify '''specificity of domain-pathway associations''', and then used it to classify ''''<del class="diffchange diffchange-inline">pathway</del>-<del class="diffchange diffchange-inline">specific domains </del>(PSDs)'''' and ''''<del class="diffchange diffchange-inline">non</del>-<del class="diffchange diffchange-inline">specific domains </del>(NSDs)''''.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>We therefore developed a network-based scoring scheme to quantify '''specificity of domain-pathway associations <ins class="diffchange diffchange-inline">(PS)</ins>''', and then used it to classify ''''<ins class="diffchange diffchange-inline">Pathway</ins>-<ins class="diffchange diffchange-inline">Specific Domains </ins>(PSDs)'''' and ''''<ins class="diffchange diffchange-inline">Non</ins>-<ins class="diffchange diffchange-inline">Specific Domains </ins>(NSDs)''''.</div></td></tr>
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</table>Shimjehttps://netbiolab.org/wiki/index.php?title=Domain2Pathway_by_Pathway_Specificity_(PS)&diff=4535&oldid=prevShimje at 07:25, 22 September 20172017-09-22T07:25:59Z<p></p>
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<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>*[<del class="diffchange diffchange-inline">http</del>://<del class="diffchange diffchange-inline">www.</del>netbiolab.org/wiki/images/<del class="diffchange diffchange-inline">0</del>/<del class="diffchange diffchange-inline">09</del>/<del class="diffchange diffchange-inline">WMI_program</del>.zip Source codes and datafile for PS calculation]</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>*[<ins class="diffchange diffchange-inline">https</ins>://netbiolab.org/wiki/images/<ins class="diffchange diffchange-inline">6</ins>/<ins class="diffchange diffchange-inline">68</ins>/<ins class="diffchange diffchange-inline">Ps</ins>.zip Source codes and datafile for PS calculation]</div></td></tr>
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</table>Shimjehttps://netbiolab.org/wiki/index.php?title=Domain2Pathway_by_Pathway_Specificity_(PS)&diff=4533&oldid=prevShimje at 07:16, 22 September 20172017-09-22T07:16:39Z<p></p>
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</table>Shimjehttps://netbiolab.org/wiki/index.php?title=Domain2Pathway_by_Pathway_Specificity_(PS)&diff=4532&oldid=prevShimje at 06:56, 22 September 20172017-09-22T06:56:32Z<p></p>
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<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''''Citation''''' : Jung Eun Shim, Ji Hyun Kim, Junha Shin, Ji Eun Lee and Insuk Lee, Network-based identification of pathway-specific protein domains and their implications for human diseases <del class="diffchange diffchange-inline">'''</del>(under review)<del class="diffchange diffchange-inline">'''</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''''Citation''''' : Jung Eun Shim, Ji Hyun Kim, Junha Shin, Ji Eun Lee and Insuk Lee, Network-based identification of pathway-specific protein domains and their implications for human diseases (under review)</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''''Contact Information''''' : Insuk Lee (insuklee[at]yonsei[dot]ac[dot]kr)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''''Contact Information''''' : Insuk Lee (insuklee[at]yonsei[dot]ac[dot]kr)</div></td></tr>
</table>Shimjehttps://netbiolab.org/wiki/index.php?title=Domain2Pathway_by_Pathway_Specificity_(PS)&diff=4531&oldid=prevShimje at 06:56, 22 September 20172017-09-22T06:56:08Z<p></p>
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<tr><td class='diff-marker'>−</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''''Citation''''' : Jung Eun Shim, Ji Hyun Kim, Junha Shin, Ji Eun Lee and Insuk Lee, Network-based identification of pathway-specific protein domains and their implications for human diseases</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''''Citation''''' : Jung Eun Shim, Ji Hyun Kim, Junha Shin, Ji Eun Lee and Insuk Lee, Network-based identification of pathway-specific protein domains and their implications for human diseases <ins class="diffchange diffchange-inline">'''(under review)'''</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''''Contact Information''''' : Insuk Lee (insuklee[at]yonsei[dot]ac[dot]kr)</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''''Contact Information''''' : Insuk Lee (insuklee[at]yonsei[dot]ac[dot]kr)</div></td></tr>
</table>Shimjehttps://netbiolab.org/wiki/index.php?title=Domain2Pathway_by_Pathway_Specificity_(PS)&diff=4530&oldid=prevShimje: Created page with "Protein domains are basic functional units of proteins, yet domain-based pathway annotations for proteins are still challenging tasks because many domains are pervasive among ..."2017-09-22T06:55:11Z<p>Created page with "Protein domains are basic functional units of proteins, yet domain-based pathway annotations for proteins are still challenging tasks because many domains are pervasive among ..."</p>
<p><b>New page</b></p><div>Protein domains are basic functional units of proteins, yet domain-based pathway annotations for proteins are still challenging tasks because many domains are pervasive among diverse pathways.<br />
Nevertheless, some domains may exist in specific pathways.<br />
We therefore developed a network-based scoring scheme to quantify '''specificity of domain-pathway associations''', and then used it to classify ''''pathway-specific domains (PSDs)'''' and ''''non-specific domains (NSDs)''''.<br />
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*[http://www.netbiolab.org/wiki/images/0/09/WMI_program.zip Source codes for PS calculation]<br />
*[http://www.netbiolab.org/wiki/images/1/1e/SC_WMI_12K.txt Example datafile]<br />
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'''''Citation''''' : Jung Eun Shim, Ji Hyun Kim, Junha Shin, Ji Eun Lee and Insuk Lee, Network-based identification of pathway-specific protein domains and their implications for human diseases<br />
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'''''Contact Information''''' : Insuk Lee (insuklee[at]yonsei[dot]ac[dot]kr)</div>Shimje