Difference between revisions of "Software"
From Bioinformatics Lab
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==''Human and Animals''== | ==''Human and Animals''== | ||
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|align="center"|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]] | |align="center"|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]] | ||
|align="center"|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]] | |align="center"|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]] | ||
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==''Plants''== | ==''Plants''== | ||
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|align="center"|[[File:Aranet_v2.jpg|150px|link=http://www.inetbio.org/aranet]] | |align="center"|[[File:Aranet_v2.jpg|150px|link=http://www.inetbio.org/aranet]] | ||
|align="center"|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]] | |align="center"|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]] | ||
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==''Fungi''== | ==''Fungi''== | ||
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|align="center"|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]] | |align="center"|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]] | ||
|align="center"|[[file:CryptoNet.png|150px|link=http://www.inetbio.org/cryptonet]] | |align="center"|[[file:CryptoNet.png|150px|link=http://www.inetbio.org/cryptonet]] | ||
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==''Bacteria''== | ==''Bacteria''== | ||
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|align="center"|[[File:Pseudomonas logo.jpg|150px|link=http://www.inetbio.org/pseudomonasnet]] | |align="center"|[[File:Pseudomonas logo.jpg|150px|link=http://www.inetbio.org/pseudomonasnet]] | ||
|align="center"|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]] | |align="center"|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]] | ||
Revision as of 16:34, 4 January 2017
Co-functional networks and hypothesis generation servers
Human and Animals
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Oryza sativa | Glycine max | Solanum lycopersicum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa | Escherichia coli |
Build your co-functional networks for all other species
JiffyNet:Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
MUFFINN (MUtations For Functional Impact on Network Neighbors): cancer gene discovery via network analysis of somatic mutation data
MORPHIN (Model Organisms Projected on a Human Integrated Gene Network): Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions
RIDDLE (Reflective diffusion and local extension): Network-assisted Gene Set Analysis (human only)
