Difference between revisions of "Software"
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|align="center"|[[File:Soynetlogo.png|150px|link=http://www.inetbio.org/soynet]] | |align="center"|[[File:Soynetlogo.png|150px|link=http://www.inetbio.org/soynet]] | ||
|align="center"|[[File:Tomatonet_logo.png|150px|link=http://www.inetbio.org/tomatonet]] | |align="center"|[[File:Tomatonet_logo.png|150px|link=http://www.inetbio.org/tomatonet]] | ||
| + | |align="center"|[[File:WheatNet_logo.png|150px|link=http://www.inetbio.org/wheatnet]] | ||
|- | |- | ||
|align="center"|''Arabidopsis thaliana'' | |align="center"|''Arabidopsis thaliana'' | ||
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|align="center"|''Glycine max'' | |align="center"|''Glycine max'' | ||
|align="center"|''Solanum lycopersicum'' | |align="center"|''Solanum lycopersicum'' | ||
| + | |align="center"|''Triticum aestivum'' | ||
|} | |} | ||
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|align="center"|[[File:Pseudomonas logo.jpg|150px|link=http://www.inetbio.org/pseudomonasnet]] | |align="center"|[[File:Pseudomonas logo.jpg|150px|link=http://www.inetbio.org/pseudomonasnet]] | ||
|align="center"|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]] | |align="center"|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]] | ||
| + | |align="center"|[[File:XooNet_logo.png|150px|link=http://www.inetbio.org/xoonet]] | ||
|- | |- | ||
|align="center"|''Pseudomonas aeruginosa'' | |align="center"|''Pseudomonas aeruginosa'' | ||
|align="center"|''Escherichia coli'' | |align="center"|''Escherichia coli'' | ||
| + | |align="center"|''Xanthomonas oryzae pv. oryzae'' | ||
|} | |} | ||
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| + | =='''Build your co-functional networks for all other species'''== | ||
| + | [[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] | ||
| + | '''JiffyNet:Instant gene network building server for newly sequenced species''' | ||
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[[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] '''COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)''' | [[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] '''COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)''' | ||
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| + | [[File:GWAB_logo.png |150px|link=http://www.inetbio.org/gwab]] '''GWAB: a web server for network-based boosting of human genome-wide association data''' | ||
Revision as of 11:50, 4 March 2017
Co-functional networks and hypothesis generation servers
Human and Animals
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Oryza sativa | Glycine max | Solanum lycopersicum | Triticum aestivum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your co-functional networks for all other species
JiffyNet:Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: a web server for network-based boosting of human genome-wide association data
MUFFINN (MUtations For Functional Impact on Network Neighbors): cancer gene discovery via network analysis of somatic mutation data
MORPHIN (Model Organisms Projected on a Human Integrated Gene Network): Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions
RIDDLE (Reflective diffusion and local extension): Network-assisted Gene Set Analysis (human only)
