Difference between revisions of "Software"

From Bioinformatics Lab
Jump to: navigation, search
(Created page with "__NOTOC__ =='''Co-functional networks: Organism-specific network-assisted hypothesis generation servers'''== ==''Animal''== {|border="0" width="800" |align="center"|[[file:M...")
 
Line 33: Line 33:
 
|align="center"|''Cryptococcus neoformans''
 
|align="center"|''Cryptococcus neoformans''
 
|}
 
|}
 +
  
 
=='''RIDDLE: Network-assisted Gene Set Analysis (human only)'''==
 
=='''RIDDLE: Network-assisted Gene Set Analysis (human only)'''==
 
[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
 
[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
 +
  
 
=='''MORPHIN: Network-assisted prediction of disease pathways in model organisms'''==
 
=='''MORPHIN: Network-assisted prediction of disease pathways in model organisms'''==
 
[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
 
[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
 +
  
 
=='''JiffyNet:Instant gene network building server for newly sequenced species'''==
 
=='''JiffyNet:Instant gene network building server for newly sequenced species'''==
 
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] Jiffy (instant) gene network modeler for newly sequenced species
 
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] Jiffy (instant) gene network modeler for newly sequenced species
 +
  
 
=='''TRRUST: A reference database of human TF-target interactions'''==
 
=='''TRRUST: A reference database of human TF-target interactions'''==
 
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
 
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.

Revision as of 10:12, 5 January 2016

Co-functional networks: Organism-specific network-assisted hypothesis generation servers

Animal

MouseNetLogo.png WormNetv3.jpg Flynet.png Tools HumanNetLogo.jpg
Mus musculus Caenorhabditis elegans Drosophila melanogaster Homo sapiens

Plant

Aranet v2.jpg RiceNetv2 logo.png
Arabidopsis thaliana Oryza sativa

Microbe

EcoliNet.png Tools YesatNetLogo.jpg CryptoNet.png
Escherichia coli Saccharomyces cerevisiae Cryptococcus neoformans


RIDDLE: Network-assisted Gene Set Analysis (human only)

Cover title riddle.jpg RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.


MORPHIN: Network-assisted prediction of disease pathways in model organisms

Logo morphin.png Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.


JiffyNet:Instant gene network building server for newly sequenced species

Jiffynetlogo4 small.jpg Jiffy (instant) gene network modeler for newly sequenced species


TRRUST: A reference database of human TF-target interactions

TRRUST logo.jpg TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.

Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox