Difference between revisions of "Web Resources"
From Bioinformatics Lab
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*[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress] | *[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress] | ||
| − | == Proteome == | + | == Proteome/Localisome == |
| + | *[http://suba.plantenergy.uwa.edu.au/ SUBA] SUBcellular location DB for Arabidopsis proteins | ||
| − | + | == Phenome/Metabolome == | |
| − | + | ||
| − | == Phenome == | + | |
*[http://www.ncbi.nlm.nih.gov/omim OMIM] Human disease DB | *[http://www.ncbi.nlm.nih.gov/omim OMIM] Human disease DB | ||
*[http://genomernai.de/GenomeRNAi/ GenomeRNAi] A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...) | *[http://genomernai.de/GenomeRNAi/ GenomeRNAi] A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...) | ||
| + | *[http://www.plastid.msu.edu/ cloroplast2010] Phenome/metabolome DB for Arabidopsis clroloplast gene KO lines (by MSU) | ||
== Genotype-to-phenotype map == | == Genotype-to-phenotype map == | ||
Revision as of 08:08, 6 August 2011
Variome
- MutaDATABASE a centralized and standardized DNA variation DB
Transcriptome
Proteome/Localisome
- SUBA SUBcellular location DB for Arabidopsis proteins
Phenome/Metabolome
- OMIM Human disease DB
- GenomeRNAi A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...)
- cloroplast2010 Phenome/metabolome DB for Arabidopsis clroloplast gene KO lines (by MSU)
Genotype-to-phenotype map
Interactome/Network
- Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)
- International Molecular Exchange Consortium (IMEx)
- Human Protein Reference Database (HPRD)
TF/miRNA/Regulaorty network
- PlnTFDB Plant TF database by University of Potsdam, Germany
- PlantTFDB Plant TF database by Peking University, China
- miRBase
- miRGator
- microRNA.org
- TargetScanHuman
- PicTar An algorithm for miRNA target scan
- Carrington Lab Resource Various DBs for plant miRNA
- hmChIP DB for publicly available human and mouse ChIP-seq and ChIP-chip data
