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Co-functional gene networks

Human and Laboratory Animals

Tools HumanNetLogo.jpg MouseNetLogo.png Danionet logo.png Flynet.png WormNetv3.jpg
Homo sapiens Mus musculus Danio rerio Drosophila melanogaster Caenorhabditis elegans

Plants

Aranet v2.jpg Maizenet logo 4th.png RiceNetv2 logo.png WheatNet logo.png Soynetlogo.png Tomatonet logo.png
Arabidopsis thaliana Zea mays Oryza sativa Triticum aestivum Glycine max Solanum lycopersicum

Fungi

Tools YesatNetLogo.jpg CryptoNet.png
Saccharomyces cerevisiae Cryptococcus neoformans

Bacteria

Staphnet logo.JPG Pseudomonas logo.jpg EcoliNet.png XooNet logo.png
Methicillin-resistant Staphylococcus aureus Pseudomonas aeruginosa Escherichia coli Xanthomonas oryzae pv. oryzae

Build your own co-functional networks

Jiffynetlogo4 small.jpg JiffyNet: Instant gene network building server for newly sequenced species



Transcriptional Regulatory Networks

TRRUST logo.jpg TRRUST: A reference database of TF-target interactions in human and mouse



Network-based Disease Research Servers

Coexpedia.png COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)


GWAB logo.png GWAB: A web server for network-based boosting of human genome-wide association data


Cover title muffinn.png MUFFINN: Cancer gene discovery via network analysis of somatic mutation data


Logo morphin.png MORPHIN: Network-assisted prediction of disease pathways in model organisms


Cover title riddle.jpg RIDDLE: Network-assisted Gene Set Analysis (human only)




Domain-based PPI networks by Weighted Mutual Information (WMI)

Project Page


Domain2Pathway by Pathway Specificity (PS)

Project Page

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