Difference between revisions of "Web Resources"
From Bioinformatics Lab
(→Variome) |
|||
| Line 30: | Line 30: | ||
*[http://plntfdb.bio.uni-potsdam.de// PlnTFDB] Plant TF database by University of Potsdam, Germany | *[http://plntfdb.bio.uni-potsdam.de// PlnTFDB] Plant TF database by University of Potsdam, Germany | ||
*[http://planttfdb.cbi.pku.edu.cn// PlantTFDB] Plant TF database by Peking University, China | *[http://planttfdb.cbi.pku.edu.cn// PlantTFDB] Plant TF database by Peking University, China | ||
| + | *[http://arabidopsis.med.ohio-state.edu/ AGRIS] Arabidopsis Gene Regulatory Information Server (by OSU) | ||
*[http://mirbase.org// miRBase] | *[http://mirbase.org// miRBase] | ||
*[http://mirgator.kobic.re.kr:8080/MEXWebApp// miRGator] | *[http://mirgator.kobic.re.kr:8080/MEXWebApp// miRGator] | ||
Revision as of 09:49, 6 August 2011
Variome
- MutaDATABASE a centralized and standardized DNA variation DB
- HapMap Project Catalog of human genetic variation
- 1000 Genome Project Deep catalog of human genetic variation
- TCGA The Cancer Genome Atlas
- ICGC cancer genome project International Cancer Genome Consortium Cancer genome project
- 1001 Genome Project Genetic variation of natural population of Arabidopsis
Transcriptome
Proteome/Localisome
- SUBA SUBcellular location DB for Arabidopsis proteins
Phenome/Metabolome
- OMIM Human disease DB
- GenomeRNAi A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...)
- cloroplast2010 Phenome/metabolome DB for Arabidopsis clroloplast gene KO lines (by MSU)
Genotype-to-phenotype map
Interactome/Network
- Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)
- International Molecular Exchange Consortium (IMEx)
- Human Protein Reference Database (HPRD)
TF/miRNA/Regulaorty network
- PlnTFDB Plant TF database by University of Potsdam, Germany
- PlantTFDB Plant TF database by Peking University, China
- AGRIS Arabidopsis Gene Regulatory Information Server (by OSU)
- miRBase
- miRGator
- microRNA.org
- TargetScanHuman
- PicTar An algorithm for miRNA target scan
- Carrington Lab Resource Various DBs for plant miRNA
- hmChIP DB for publicly available human and mouse ChIP-seq and ChIP-chip data
