Difference between revisions of "Web Resources"
From Bioinformatics Lab
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== Chemical/Drug/Drug network == | == Chemical/Drug/Drug network == | ||
*[http://pubchem.ncbi.nlm.nih.gov/ PubChem] | *[http://pubchem.ncbi.nlm.nih.gov/ PubChem] | ||
| + | *[http://stitch.embl.de/ STITCH] DB for known and predicted chemical-protein interaction | ||
== Ontology/Pathway == | == Ontology/Pathway == | ||
Revision as of 15:16, 6 August 2011
Variome
- MutaDATABASE a centralized and standardized DNA variation DB
- HapMap Project Catalog of human genetic variation
- 1000 Genome Project Deep catalog of human genetic variation
- TCGA The Cancer Genome Atlas
- ICGC cancer genome project International Cancer Genome Consortium Cancer genome project
- 1001 Genome Project Genetic variation of natural population of Arabidopsis
Transcriptome
Proteome/Localisome
- SUBA SUBcellular location DB for Arabidopsis proteins
Phenome/Metabolome
- OMIM Human disease DB
- GenomeRNAi A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...)
- cloroplast2010 Phenome/metabolome DB for Arabidopsis clroloplast gene KO lines (by MSU)
Genotype-to-phenotype map
Interactome/Network
- Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)
- International Molecular Exchange Consortium (IMEx)
- iRefWeb a web interface to PPI consolidated from 10 public DB (BIND, BioGRID, CORUM, DIP,IntAct, HPRD, MINT, MPact, MPPI, OPHID)
- Human Protein Reference Database (HPRD)
TF/miRNA/Regulaorty network
- PlnTFDB Plant TF database by University of Potsdam, Germany
- PlantTFDB Plant TF database by Peking University, China
- AGRIS Arabidopsis Gene Regulatory Information Server (by OSU)
- miRBase
- miRGator
- microRNA.org
- TargetScanHuman
- PicTar An algorithm for miRNA target scan
- Carrington Lab Resource Various DBs for plant miRNA
- hmChIP DB for publicly available human and mouse ChIP-seq and ChIP-chip data
Chemical/Drug/Drug network
Ontology/Pathway
Bacterial genomes
Fungal genomes
Animal genomes
Plant genomes
Metagenomes
Stem Cells
Others
- CAGI Critical Assessment of Genome Interpretation
