Difference between revisions of "Services"
From Bioinformatics Lab
(→JiffyNet: A gene network inference server for newly sequenced species) |
(→TRRUST: a reference database of human transcriptional regulatory interactions) |
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[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] Jiffy (instant) gene network modeler for newly sequenced species | [[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] Jiffy (instant) gene network modeler for newly sequenced species | ||
| − | ==''' | + | =='''A reference database of human TF-target interactions'''== |
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes. | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes. | ||
Revision as of 20:43, 21 October 2015
Organism-specific network-assisted hypothesis generation servers
Animal
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| Mus musculus | Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens |
Plant
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| Arabidopsis thaliana | Oryza sativa |
Microbe
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| Escherichia coli | Saccharomyces cerevisiae | Cryptococcus neoformans |
Network-assisted Gene Set Analysis (human only)
RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
Network-assisted prediction of disease pathways in model organisms
Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
Instant gene network building server for newly sequenced species
Jiffy (instant) gene network modeler for newly sequenced species
A reference database of human TF-target interactions
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
