Difference between revisions of "Services"

Latest revision as of 12:34, 5 January 2016

Co-functional networks: Organism-specific network-assisted hypothesis generation servers

Animal


Mus musculus	Caenorhabditis elegans	Drosophila melanogaster	Homo sapiens

Plant


Arabidopsis thaliana	Oryza sativa

Microbe


Escherichia coli	Saccharomyces cerevisiae	Cryptococcus neoformans

TRRUST: A reference database of human TF-target interactions

TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.

MORPHIN: Network-assisted prediction of disease pathways in model organisms

Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.

JiffyNet:Instant gene network building server for newly sequenced species

Jiffy (instant) gene network modeler for newly sequenced species

RIDDLE: Network-assisted Gene Set Analysis (human only)

RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.

@@ Line 1: / Line 1: @@
 __NOTOC__
-==Genome-scale gene networks for model organisms==
+=='''Co-functional networks: Organism-specific network-assisted hypothesis generation servers'''==
-[[file:Tools_RiceNetLogo.jpg|150px|link=http://www.functionalnet.org/ricenet]] Functional gene network for ''Oryza sativa''. Version 1 (18,377 genes, 588,221 links)
-[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]] Functional gene network for ''Homo sapiens''. Version 1 (16,242 genes, 476,399 links)
+==''Animal''==
+{|border="0"  width="800"
+|align="center"|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]]
+|align="center"|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]]
+|align="center"|[[file:Flynet.png|150px|link=http://www.inetbio.org/flynet]]
+|align="center"|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]]
+|-
+|align="center"|''Mus musculus''
+|align="center"|''Caenorhabditis elegans''
+|align="center"|''Drosophila melanogaster''
+|align="center"|''Homo sapiens''
+|}
-[[file:Tools_AraNetLogo.jpg|150px|link=http://www.functionalnet.org/aranet]] Functional gene network for ''Arabidopsis thaliana''. Version 1 (19,647 genes, 1,062,222 links)
+==''Plant''==
+{|border="0"  width="400"
+|align="center"|[[File:Aranet_v2.jpg|150px|link=http://www.inetbio.org/aranet]]
+|align="center"|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]]
+|-
+|align="center"|''Arabidopsis thaliana''
+|align="center"|''Oryza sativa''
+|}
+==''Microbe''==
+{|border="0"  width="600"
+|align="center"|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]]
+|align="center"|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]]
+|align="center"|[[file:CryptoNet.png|150px|link=http://www.inetbio.org/cryptonet]]
+|-
+|align="center"|''Escherichia coli''
+|align="center"|''Saccharomyces cerevisiae''
+|align="center"|''Cryptococcus neoformans''
+|}
-[[file:Tools_WormNetLogo.jpg|150px|link=http://www.functionalnet.org/wormnet]] Functional gene network for ''Caenorhabditis elegans''. Version 2 (15,139 genes, 999,367 links)
+=='''TRRUST: A reference database of human TF-target interactions'''==
+[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
-[[file:Tools_YeastNetLogo.jpg|150px|link=http://www.yeastnet.org]] Functional gene network for ''Saccharomyces cerevisiae''. Version 2 (5,483 genes, 102,803 links)
+=='''MORPHIN: Network-assisted prediction of disease pathways in model organisms'''==
+[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
-==A network-assisted Gene Set Analysis server==
+=='''JiffyNet:Instant gene network building server for newly sequenced species'''==
-[[File:Riddle cover title.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE: Reflective diffusion and local extension
+[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] Jiffy (instant) gene network modeler for newly sequenced species
-==A web-based instant protein network modeler for newly sequenced species==
+=='''RIDDLE: Network-assisted Gene Set Analysis (human only)'''==
-[[File:Jiffynetlogo small.png |150px|link=http://www.jiffynet.org]] JiffyNet: an instant network builder
+[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.