Difference between revisions of "Services"

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==Genome-scale gene networks for model organisms==
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=='''Co-functional networks: Organism-specific network-assisted hypothesis generation servers'''==
[[file:Tools_RiceNetLogo.jpg|150px|link=http://www.functionalnet.org/ricenet]] Functional gene network for ''Oryza sativa''. Version 1 (18,377 genes, 588,221 links)
 
  
[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]] Functional gene network for ''Homo sapiens''. Version 1 (16,242 genes, 476,399 links)
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==''Animal''==
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{|border="0"  width="800"
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|align="center"|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]]
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|align="center"|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]]
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|align="center"|[[file:Flynet.png|150px|link=http://www.inetbio.org/flynet]]
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|align="center"|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]]
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|-
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|align="center"|''Mus musculus''
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|align="center"|''Caenorhabditis elegans''
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|align="center"|''Drosophila melanogaster''
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|align="center"|''Homo sapiens''
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|}
  
[[file:Tools_AraNetLogo.jpg|150px|link=http://www.functionalnet.org/aranet]] Functional gene network for ''Arabidopsis thaliana''. Version 1 (19,647 genes, 1,062,222 links)
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==''Plant''==
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{|border="0"  width="400"
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|align="center"|[[File:Aranet_v2.jpg|150px|link=http://www.inetbio.org/aranet]]
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|align="center"|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]]
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|-
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|align="center"|''Arabidopsis thaliana''
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|align="center"|''Oryza sativa''
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|}
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==''Microbe''==
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{|border="0"  width="600"
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|align="center"|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]]
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|align="center"|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]]
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|align="center"|[[file:CryptoNet.png|150px|link=http://www.inetbio.org/cryptonet]]
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|-
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|align="center"|''Escherichia coli''
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|align="center"|''Saccharomyces cerevisiae''
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|align="center"|''Cryptococcus neoformans''
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|}
  
[[file:Tools_WormNetLogo.jpg|150px|link=http://www.functionalnet.org/wormnet]] Functional gene network for ''Caenorhabditis elegans''. Version 2 (15,139 genes, 999,367 links)
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=='''TRRUST: A reference database of human TF-target interactions'''==
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[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
  
[[file:Tools YeastNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]] Functional gene network for ''Saccharomyces cerevisiae''. Version 3 (5,818 genes, 362,512 links)
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=='''MORPHIN: Network-assisted prediction of disease pathways in model organisms'''==
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[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
  
==A network-assisted Gene Set Analysis server==
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=='''JiffyNet:Instant gene network building server for newly sequenced species'''==
[[File:Riddle cover title.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE: Reflective diffusion and local extension
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[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] Jiffy (instant) gene network modeler for newly sequenced species
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==A web-based instant protein network modeler for newly sequenced species==
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=='''RIDDLE: Network-assisted Gene Set Analysis (human only)'''==
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] JiffyNet: an instant network builder
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[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.

Latest revision as of 12:34, 5 January 2016

Co-functional networks: Organism-specific network-assisted hypothesis generation servers

Animal

MouseNetLogo.png WormNetv3.jpg Flynet.png Tools HumanNetLogo.jpg
Mus musculus Caenorhabditis elegans Drosophila melanogaster Homo sapiens

Plant

Aranet v2.jpg RiceNetv2 logo.png
Arabidopsis thaliana Oryza sativa

Microbe

EcoliNet.png Tools YesatNetLogo.jpg CryptoNet.png
Escherichia coli Saccharomyces cerevisiae Cryptococcus neoformans

TRRUST: A reference database of human TF-target interactions

TRRUST logo.jpg TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.

MORPHIN: Network-assisted prediction of disease pathways in model organisms

Logo morphin.png Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.

JiffyNet:Instant gene network building server for newly sequenced species

Jiffynetlogo4 small.jpg Jiffy (instant) gene network modeler for newly sequenced species

RIDDLE: Network-assisted Gene Set Analysis (human only)

Cover title riddle.jpg RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.