Difference between revisions of "Software"
From Bioinformatics Lab
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=='''TRRUST: A reference database of human TF-target interactions'''== | =='''TRRUST: A reference database of human TF-target interactions'''== | ||
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes. | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes. | ||
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| + | =='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | ||
| + | Source codes for calculating WMI | ||
| + | Yeast PPI network | ||
| + | Human PPI network | ||
Revision as of 15:06, 18 March 2016
Co-functional networks: Organism-specific network-assisted hypothesis generation servers
Animal
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| Mus musculus | Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens |
Plant
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| Arabidopsis thaliana | Oryza sativa |
Microbe
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| Escherichia coli | Saccharomyces cerevisiae | Cryptococcus neoformans |
RIDDLE: Network-assisted Gene Set Analysis (human only)
RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
JiffyNet:Instant gene network building server for newly sequenced species
Jiffy (instant) gene network modeler for newly sequenced species
TRRUST: A reference database of human TF-target interactions
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
Domain-based PPI networks by Weighted Mutual Information (WMI)
Source codes for calculating WMI Yeast PPI network Human PPI network
