Difference between revisions of "Research"
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==Collaborators== | ==Collaborators== | ||
*Edward Marcotte, University of Texas at Austin, USA | *Edward Marcotte, University of Texas at Austin, USA | ||
*Andrew Fraser, University of Toronto, Canada | *Andrew Fraser, University of Toronto, Canada | ||
Ben Lehner, Systems Biology Unit, EMBL-CRG, Spain | *Ben Lehner, Systems Biology Unit, EMBL-CRG, Spain | ||
Sue Rhee, Carnegie Institution of Science, USA | *Sue Rhee, Carnegie Institution of Science, USA | ||
Pamela Ronald, University of California at Davis, USA | *Pamela Ronald, University of California at Davis, USA | ||
Matthew Hurles, Sanger Institute, UK | *Matthew Hurles, Sanger Institute, UK | ||
Philip Benfey, Duke University, USA | *Philip Benfey, Duke University, USA | ||
Sangsun Yoon, Yonsei Medical School, Korea | *Sangsun Yoon, Yonsei Medical School, Korea | ||
Dongryul Lee, Cha Medical School, Korea | *Dongryul Lee, Cha Medical School, Korea | ||
Yongsun Bahn, Yonsei University, Korea | *Yongsun Bahn, Yonsei University, Korea | ||
Sangjun Ha, Yonsei University, Korea | *Sangjun Ha, Yonsei University, Korea | ||
==Functional Networks== | ==Functional Networks== | ||
Revision as of 16:09, 9 April 2011
Research Summary
The ultimate goal of biological research is to manipulate traits that are important for medicine, agriculture, and bio-industry. This challenging task first requires good understanding of association between genotype and phenotype. Because of high complexity of genotype as well as phenotype, complexity of the genotype-phenotype association could be even untouchable by combinatorial explosion of the number of possible associations. Therefore, modern genetics needs to be more systematic and predictive. Recently we proposed network-guided approach for genetics of complex traits. First, we construct probabilistic functional gene networks for cells or organisms by benchmarking and integrating heterogeneous multi-omics data that are in general publicly available. Then, using guilt-by-association, and other algorithms of network propagation of known biological information, we predict gene functions, phenotypic effect of loss-of-function, and epistatic interaction. The information can contribute to reconstruction of map between genotype and phenotype. The network-guided genetics method has been effectively applied for various organisms; from simple microbe yeast, to multicellular animal C. elegans, to the reference plant Arabidopsis, to the reference crop rice, and to the human.
Collaborators
- Edward Marcotte, University of Texas at Austin, USA
- Andrew Fraser, University of Toronto, Canada
- Ben Lehner, Systems Biology Unit, EMBL-CRG, Spain
- Sue Rhee, Carnegie Institution of Science, USA
- Pamela Ronald, University of California at Davis, USA
- Matthew Hurles, Sanger Institute, UK
- Philip Benfey, Duke University, USA
- Sangsun Yoon, Yonsei Medical School, Korea
- Dongryul Lee, Cha Medical School, Korea
- Yongsun Bahn, Yonsei University, Korea
- Sangjun Ha, Yonsei University, Korea
