Difference between revisions of "Software"
From Bioinformatics Lab
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=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | =='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | ||
| − | Source codes for calculating WMI | + | *Source codes for calculating WMI |
| − | Yeast PPI network | + | *Yeast PPI network |
| − | Human PPI network | + | *Human PPI network |
Revision as of 15:06, 18 March 2016
Co-functional networks: Organism-specific network-assisted hypothesis generation servers
Animal
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| Mus musculus | Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens |
Plant
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| Arabidopsis thaliana | Oryza sativa |
Microbe
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| Escherichia coli | Saccharomyces cerevisiae | Cryptococcus neoformans |
RIDDLE: Network-assisted Gene Set Analysis (human only)
RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
JiffyNet:Instant gene network building server for newly sequenced species
Jiffy (instant) gene network modeler for newly sequenced species
TRRUST: A reference database of human TF-target interactions
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
Domain-based PPI networks by Weighted Mutual Information (WMI)
- Source codes for calculating WMI
- Yeast PPI network
- Human PPI network
