Difference between revisions of "Publications"

Revision as of 17:19, 3 March 2010

JOURNAL PUBLICATIONS

1. Insuk Lee, Bindu Ambaru, Pranjali Thakkar, Edward M Marcotte, Seung Y Rhee, Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana, Nature Biotechnology, 28:149-156 (2010). IL is a co-corresponding author
2. Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte, Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics, PLoS Biology, 7(10):e1000213 (2009)
3. Ryan S. Gray, Philip B. Abitua, Bogdan J. Wlodarczyk, Heather L. Szabo-Rogers, Otis Blanchard, Insuk Lee, Greg S. Weiss, Karen J. Liu, Edward M. Marcotte, John B. Wallingford, Richard H. Finnell. The planar cell polarity effector protein Fuzzy is essential for targeted membrane trafficking, ciliogenesis, and mouse embryonic development, Nature Cell Biology 11:1225-32 (2009) *Cover story
4. Ben Lehner and Insuk Lee. Network-guided genetic screening: building, testing, and using gene networks to predict gene function. Brief. Funct. Genomic. Proteomic. 7:217-227 (2008). IL is a co-corresponding author.
5. Insuk Lee, Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte. A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. Nature Genetics 40:181-188 (2008). *Cover story *This paper was the subject of an invited commentary (Natalie de Souza, Networking on organism. Nature Methods 5:217), and was the subject of minireviews (Von Stetina S. E. and Mango S. E. Wormnet: a crystal ball for Caenorhabditis elegans. Genome Biology 9:226. Borgwardt K. Predicting phenotypic effects of gene perturbations in C. elegans using an integrated network model. BioEssays 30:707).
6. Kris McGary, Insuk Lee, Edward M. Marcotte. Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes. Genome Biology 8:R258 (2007)
7. Insuk Lee, Zhihua Li, and Edward M. Marcotte. An improved bias-reduced probabilistic functional gene network of baker’s yeast Saccharomyces cerevisiae. PLOS One 2:e988 (2007)
8. G. Traver Hart, Insuk Lee, Edward Marcotte. A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. BMC Bioinformatic 8:236 (2007)
9. Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward Marcotte. A Probabilistic functional network of yeast genes. Science 306:1555-1558, (2004)
10. Bork, P., Jensen, L.J., Von Mering, C., Ramani, A.K., Lee I, Marcotte, E.M. Protein interaction networks from yeast to human. Curr. Opin. Struct. Biol. 14:292-9, (2004)
11. Insuk Lee and Rasika Harshey. Patterns of Sequence conservation at termini of LTR retrotransposons and DNA transposons in the human genome: Lessons from phage Mu. Nucleic Acids Res. 31:4531-4540, (2003)
12. Insuk Lee and Rasika Harshey. The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. J. Mol. Biol. 330:261-275, (2003)
13. Insuk Lee and Rasika Harshey. Importance of the conserved CA dinucleotide at Mu termini. J. Mol. Biol. 314:433-444, (2001)
14. Xue, Y., Bai, X., Lee, I., Kallstrom, G., Ho, J., Brown, J., Stevens, A., and Johnson, A. W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. Mol. Cell. Biol. 20:4006-4015, (2000)
15. Liu, J., Gong, Y., Prakash, O., Wen, L., Lee, I., Huang J.,-K., and Krishnamoorthi, R. NMR studies of internal dynamics of serine proteinase protein inhibitors: Binding region mobilities of intact and reactive-site hydrolyzed CMTI-III of the squash family and comparison with those of counterparts of CMTI-V of the potato I family. Protein Science 7:132-141, (1998)
16. Wen, L., Lee, I., Chen, G., Huang, J.,-K., Gong, Y., and Krishnamoorthi, R. Changing the inhibitory specificity and function of CMTI-V by site-directed mutagenesis. Biochem. Biophys. Res. Commun. 207:897-902, (1995)

TALKS

Meetings

Overseas

1. Cold Spring Harbor Laboratory Conference on Plant genomes, Cold Spring Harbor, NY, USA (March 7, 2009)
2. The iPlant Collaborative, Mechanistic modeling grand challenge workshop, Biosphere 2, Tucson, AZ, USA (November 8-9, 2008)
3. Cold Spring Harbor Laboratory/Wellcome Trust Conference-Functional Genomics & Systems Biology, Hinxton, UK (Oct. 10-13, 2007)
4. Intelligent Systems for Molecular Biology Conference, Fortaleza, Brazil (Aug. 6-10, 2006)
5. Keystone Symposia, Systems Biology meeting, Taos, NM, USA (Mar. 5-10, 2006)
6. Institute of Pure and Applied Mathematics (IPAM), Proteomics Reunion Conference, Los Angeles, CA, USA (Dec, 2005)
7. Intelligent Systems for Molecular Biology Conference, Detroit, MI, USA (June 25-29, 2005)

In Korea

1. Korean Society for Molecular and Cellular Biology (KSMCB) Systems Biology Symposium, Jeju, Korea (December 4, 2009)
2. Center for Fungal Pathogenesis International Symposium, Seoul, Korea (November 13, 2009) Fungal Genetics and Genomics
3. 2009 Kyungbuk National University Brain Science Center Symposium, Daeku, Korea (November 11, 2009)
4. 2009 International Symposium Commemorating the 200th Anniversary of Darwin’s Birth, Daejeon, Korea (August 21, 2009) Plant genetics using predictive functional gene network model
5. Trilateral Symposium on Systems and Synthetic Biology 2009, Suwon, Korea (August 13-15, 2009), Network-guided Genetics to study complex traits in human and crops
6. KHUPO 9th Annual International Proteomics Conference, Seoul, Korea (March 27, 2009), Chair for Functional Proteomics and Systems Biology Symposium
7. The 1st Yonsei Biomedical Forum, Yonsei University, Seoul, Korea (March 11, 2009)
8. The 9th international conference of Korean Society for Bioinformatics and Systems Biology (KSBSB), Chungbuk National University, Korea (November 13-14, 2008)
9. International symposium on systems bioinformatics, Iwha Women’s University, Korea (November 12, 2008)
10. International Meeting of the Federation of Korean Microbiological Societies, Seoul KyoYuk MunHwa HoeKwan, Seoul, Korea (October 16-17, 2008)
11. The 8th KIAS-Yonsei Conference on Protein Structure and Function, Yonsei University, Korea (October 9-11, 2008)
12. 2008 Fall KSBB Meeting and International Symposium, Jeju ICC, Korea (October 6-7, 2008
13. Korean Society of Medical Biochemistry and Molecular Biology (KSMBMB) 2008 Summer conference, Jeong-dong-jin, Korea (July 10-12, 2008)
14. 1st International Symposium of Global 5-5-10 Yonsei Biomedical Science and Technology Initiative, Seoul, Korea (June 28, 2008)
15. The Korean Society for Microbiology and Biotechnology (KMB) 2008 International Symposium and Annual Meeting, Seoul, Korea (June 26-28, 2008)
16. The Korean Human Proteome Organization (KHUPO) 8th Annual International Proteomics Conference, Jeju, Korea (May 29-31, 2008)
17. Solanaceae Genomics meeting, Jeju, Korea (Sept. 9-13, 2007)

Seminar

Overseas

1. Carnegie Institution of Plant Biology, Stanford, CA, USA (Aug, 28, 2009), Gene Network and Crop Engineering
2. University of California at Davis, Department of Plant Pathology, Davis, CA, USA (Aug, 27, 2009), Gene network and Crop engineering
3. Syngenta Global company, R&D center, Research Triangle Park, NC, USA (June 30, 2009)
4. Carnegie Mellon University, Program of Computational Biology, Pittsburg, PA, USA (Jan, 2008)
5. National Human Genome Research Institute, Bethesda, MD, USA (Jan, 2008)
6. Rice University, Department of Biochemistry and Cell Biology, Houston, TX, USA (Jan, 2008)
7. University of Rochester School of Medicine, Department of Medical Genetics, Rochester, NY, USA (Dec, 2007)
8. Indiana University School of Medicine, Center for Computational Biology, Indianapolis, IN, USA (April, 2006)
9. University of North Carolina at Charlotte, Department of Bioinformatics, Charlotte, NC, USA (Feb, 2006)
10. Monsanto company, St. Louis, MO, USA (Aug, 2005)
11. Rosetta Inpharmatics Inc. Seattle, WA, USA (May, 2005)

Domestic

1. Seoul National University, Integrative biotechnology education program, Korea (May 30, 2009)
2. Seoul National University, Bio-engineering program, Korea (April 14, 2009)
3. Korea University, School of Life Sciences and Biotechnology, Korea (April 7, 2009)
4. Korea University, National Creative Initiative, Korea (March 18, 2009)
5. National Institute of Health, Center for Genome Science, Korea (November 19, 2008)
6. Seoul National University, School of Biological Science, Korea (November 17, 2008)
7. Soong-sil University, Department of Bioinformatics, Seoul, Korea (June 1, 2008)
8. Korea University, Bioinformatics association, Seoul, Korea (April, 2008)
9. Yonsei University, Institute of Life science and Biotechnology, Seoul, Korea (April, 2008)
10. Yonsei University, Department of Biotechnology, Seoul, Korea (Mar, 2008)
11. Pochon Cha University College of medicine, Seoul, Korea (Sept, 2007)
12. Myongji University, Department of Life Science, Suwon, Korea (Sept, 2007)
13. Yeungnam University, Department of Life Science, Daegu, Korea (Sept, 2007)
14. Pohang University of Science and Technology (POSTECH), School of Interdisciplinary Bioscience and Bioengineering, Pohang, Korea (Sept, 2007)
15. Seoul National University, College of Agriculture and Life Science, Seoul, Korea (Sept, 2007)
16. Hanyang University, Department of Life Science, Seoul, Korea (Sept, 2007)
17. Sungshin Women’s University, Department of Life Science, Seoul, Korea (Sept, 2007)
18. Pohang University of Science and Technology (POSTECH), Department of Life Science, Pohang, Korea (Mar, 2006)