Web Resources
Contents
- 1 Variome
- 2 Transcriptome
- 3 Proteome/Localisome
- 4 Phenome/Metabolome
- 5 Genotype-to-phenotype map
- 6 Interactome/Network
- 7 TF/miRNA/Regulaorty network
- 8 Chemical/Drug/Drug network
- 9 Ontology/Pathway
- 10 Bacterial genomes
- 11 Fungal genomes
- 12 Animal genomes
- 13 Plant genomes
- 14 Metagenomes
- 15 Stem Cells
- 16 Others
Variome
- MutaDATABASE a centralized and standardized DNA variation DB
Transcriptome
Proteome/Localisome
- SUBA SUBcellular location DB for Arabidopsis proteins
Phenome/Metabolome
- OMIM Human disease DB
- GenomeRNAi A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...)
- cloroplast2010 Phenome/metabolome DB for Arabidopsis clroloplast gene KO lines (by MSU)
Genotype-to-phenotype map
Interactome/Network
- Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)
- International Molecular Exchange Consortium (IMEx)
- Human Protein Reference Database (HPRD)
TF/miRNA/Regulaorty network
- PlnTFDB Plant TF database by University of Potsdam, Germany
- PlantTFDB Plant TF database by Peking University, China
- miRBase
- miRGator
- microRNA.org
- TargetScanHuman
- PicTar An algorithm for miRNA target scan
- Carrington Lab Resource Various DBs for plant miRNA
- hmChIP DB for publicly available human and mouse ChIP-seq and ChIP-chip data
