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Genome-scale gene networks for various species

Bacteria

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Escherichia coli Cryptococcus neoformans

Fungi

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Saccharomyces cerevisiae

Plant

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Arabidopsis thaliana Oryza sativa

Animal

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Caenorhabditis elegans Homo sapiens

RIDDLE: for network-assisted Gene Set Analysis

150px RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.

MORPHIN: to study human diseases based on model organism pathways

150px Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.

JiffNet: to construct gene network for newly sequenced species

150px Jiffy (instant) gene network modeler for newly sequenced species