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Genome-scale functional gene networks
Animal
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| Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens |
Plant
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| Arabidopsis thaliana | Oryza sativa |
Microbe
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| Escherichia coli | Saccharomyces cerevisiae | Cryptococcus neoformans |
RIDDLE: for network-assisted Gene Set Analysis
RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
MORPHIN: to study human diseases based on model organism pathways
Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
JiffyNet: to construct gene network for newly sequenced species
Jiffy (instant) gene network modeler for newly sequenced species