Difference between revisions of "Domain-based PPI network by Weighted Mutual Information (WMI)"
From Bioinformatics Lab
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| − | Functional protein-protein interaction (PPI) networks elucidate molecular pathways underlying complex phenotypes, including those of human diseases. | + | Functional protein-protein interaction (PPI) networks elucidate molecular pathways underlying complex phenotypes, including those of human diseases. |
| − | Here, we present a method for inferring accurate functional PPIs based on the similarity of domain composition between proteins by weighted mutual information that assigned different weights to the domains based on their genome-wide frequencies. | + | Protein domain is a functional unit of the protein. Therefore, we may effectively infer functional interactions between proteins based on the co-occurrence of domains. |
| + | Here, we present a method for inferring accurate functional PPIs based on the similarity of domain composition between proteins by '''''weighted mutual information (WMI)''''' that assigned different weights to the domains based on their genome-wide frequencies. | ||
*[http://www.netbiolab.org/wiki/images/0/09/WMI_program.zip Source codes for WMI calculation] | *[http://www.netbiolab.org/wiki/images/0/09/WMI_program.zip Source codes for WMI calculation] | ||
Revision as of 16:22, 26 March 2016
Functional protein-protein interaction (PPI) networks elucidate molecular pathways underlying complex phenotypes, including those of human diseases. Protein domain is a functional unit of the protein. Therefore, we may effectively infer functional interactions between proteins based on the co-occurrence of domains. Here, we present a method for inferring accurate functional PPIs based on the similarity of domain composition between proteins by weighted mutual information (WMI) that assigned different weights to the domains based on their genome-wide frequencies.
- Source codes for WMI calculation
- Domain-based yeast PPI network by WMI
- Domain-based human PPI network by WMI
Citation: Jung Eun Shim and Insuk Lee, Weighted mutual information analysis substantially improves domain-based functional network models Under review
