Difference between revisions of "Services"

From Bioinformatics Lab
Jump to: navigation, search
 
(82 intermediate revisions by 10 users not shown)
Line 1: Line 1:
 
__NOTOC__
 
__NOTOC__
==Genome-scale gene networks for model organisms==
+
=='''Co-functional networks: Organism-specific network-assisted hypothesis generation servers'''==
[[file:Tools_RiceNetLogo.jpg|150px|link=http://www.functionalnet.org/ricenet]] Functional gene network for ''Oryza sativa''. Version 1 (18,377 genes, 588,221 links)
+
  
[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]] Functional gene network for ''Homo sapiens''. Version 1 (16,242 genes, 476,399 links)
+
==''Animal''==
 +
{|border="0"  width="800"
 +
|align="center"|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]]
 +
|align="center"|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]]
 +
|align="center"|[[file:Flynet.png|150px|link=http://www.inetbio.org/flynet]]
 +
|align="center"|[[file:Tools_HumanNetLogo.jpg|150px|link=http://www.functionalnet.org/humannet]]
 +
|-
 +
|align="center"|''Mus musculus''
 +
|align="center"|''Caenorhabditis elegans''
 +
|align="center"|''Drosophila melanogaster''
 +
|align="center"|''Homo sapiens''
 +
|}
  
[[file:Tools_AraNetLogo.jpg|150px|link=http://www.functionalnet.org/aranet]] Functional gene network for ''Arabidopsis thaliana''. Version 1 (19,647 genes, 1,062,222 links)
+
==''Plant''==
 +
{|border="0"  width="400"
 +
|align="center"|[[File:Aranet_v2.jpg|150px|link=http://www.inetbio.org/aranet]]
 +
|align="center"|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]]
 +
|-
 +
|align="center"|''Arabidopsis thaliana''
 +
|align="center"|''Oryza sativa''
 +
|}
 +
==''Microbe''==
 +
{|border="0"  width="600"
 +
|align="center"|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]]
 +
|align="center"|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]]
 +
|align="center"|[[file:CryptoNet.png|150px|link=http://www.inetbio.org/cryptonet]]
 +
|-
 +
|align="center"|''Escherichia coli''
 +
|align="center"|''Saccharomyces cerevisiae''
 +
|align="center"|''Cryptococcus neoformans''
 +
|}
  
[[file:Tools_WormNetLogo.jpg|150px|link=http://www.functionalnet.org/wormnet]] Functional gene network for ''Caenorhabditis elegans''. Version 2 (15,139 genes, 999,367 links)  
+
=='''TRRUST: A reference database of human TF-target interactions'''==
 +
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
  
[[file:Tools_YeastNetLogo.jpg|150px|link=http://www.yeastnet.org]] Functional gene network for ''Saccharomyces cerevisiae''. Version 2 (5,483 genes, 102,803 links)
+
=='''MORPHIN: Network-assisted prediction of disease pathways in model organisms'''==
 +
[[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
  
==A network-assisted Gene Set Analysis server==
+
=='''JiffyNet:Instant gene network building server for newly sequenced species'''==
[[File:Riddle cover title.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE: Reflective diffusion and local extension
+
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] Jiffy (instant) gene network modeler for newly sequenced species
+
 
==A web-based instant protein network modeler for newly sequenced species==
+
=='''RIDDLE: Network-assisted Gene Set Analysis (human only)'''==
[[File:Jiffynetlogo small.png |150px|link=http://www.jiffynet.org]] JiffyNet
+
[[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.

Latest revision as of 12:34, 5 January 2016

[edit] Co-functional networks: Organism-specific network-assisted hypothesis generation servers

[edit] Animal

MouseNetLogo.png WormNetv3.jpg Flynet.png Tools HumanNetLogo.jpg
Mus musculus Caenorhabditis elegans Drosophila melanogaster Homo sapiens

[edit] Plant

Aranet v2.jpg RiceNetv2 logo.png
Arabidopsis thaliana Oryza sativa

[edit] Microbe

EcoliNet.png Tools YesatNetLogo.jpg CryptoNet.png
Escherichia coli Saccharomyces cerevisiae Cryptococcus neoformans

[edit] TRRUST: A reference database of human TF-target interactions

TRRUST logo.jpg TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.

[edit] MORPHIN: Network-assisted prediction of disease pathways in model organisms

Logo morphin.png Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.

[edit] JiffyNet:Instant gene network building server for newly sequenced species

Jiffynetlogo4 small.jpg Jiffy (instant) gene network modeler for newly sequenced species

[edit] RIDDLE: Network-assisted Gene Set Analysis (human only)

Cover title riddle.jpg RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.

Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox