Difference between revisions of "Web Resources"

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(Chemical/Drug/Drug network)
(Chemical/Drug/Drug network)
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*[http://drugbank.ca/ Drugbank]
 
*[http://drugbank.ca/ Drugbank]
 
*[http://matador.embl.de/ MATADOR] Manually Annotated Targets and Drugs Online Resource
 
*[http://matador.embl.de/ MATADOR] Manually Annotated Targets and Drugs Online Resource
 +
*[http://pdsp.med.unc.edu/kidb.php PDSP Ki DB] data warehouse for published and internally-derived Ki, or affinity of drugs at targets
  
 
== Animal genomes ==
 
== Animal genomes ==

Revision as of 14:46, 13 November 2011

Contents

Ontology/Pathway

Variome

Prediction of deleteriousness of SNV

Transcriptome

Proteome/Localisome

  • SUBA SUBcellular location DB for Arabidopsis proteins

Phenome/Metabolome

  • OMIM Human disease DB
  • ICD International Classification of Disease by WHO
  • GenomeRNAi A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...)
  • cloroplast2010 Phenome/metabolome DB for Arabidopsis clroloplast gene KO lines (by MSU)

Genotype-to-phenotype map

Interactome/Network

TF/miRNA/Regulaorty network

Chemical/Drug/Drug network

  • PubChem
  • STITCH DB for known and predicted chemical-protein interaction
  • CTD
  • Drugbank
  • MATADOR Manually Annotated Targets and Drugs Online Resource
  • PDSP Ki DB data warehouse for published and internally-derived Ki, or affinity of drugs at targets

Animal genomes

Plant genomes

Metagenomes

  • CAMERA 2.0 Curated DB and analysis tool for metagenomes
  • NCBI Metagenome DB Categorized with metagenome types, sources and sequencing methods.

Other genomes

Other resources

  • GOLD Genome Online Database-Genome project statistics and download links
  • CAGI Critical Assessment of Genome Interpretation
  • nightscience Collective creativity in scientific discovery games
Personal tools
Namespaces

Variants
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