Difference between revisions of "Web Resources"

From Bioinformatics Lab
Jump to: navigation, search
(Diseasome/Phenome/Metabolome)
(Diseasome/Phenome/Metabolome)
Line 36: Line 36:
  
 
== Diseasome/Phenome/Metabolome ==
 
== Diseasome/Phenome/Metabolome ==
*[http://disease-ontology.org/ Disease Ontology]  
+
*[http://disease-ontology.org/ Disease Ontology] [http://django.nubic.northwestern.edu/fundo/ FUNDO]
 
*[http://www.human-phenotype-ontology.org/ Human Phenotype Ontology]
 
*[http://www.human-phenotype-ontology.org/ Human Phenotype Ontology]
 
*[http://www.ncbi.nlm.nih.gov/omim OMIM] Human disease DB  
 
*[http://www.ncbi.nlm.nih.gov/omim OMIM] Human disease DB  

Revision as of 09:47, 12 January 2012

Contents

GATEWAY DB

Ontology/Pathway

Variome

  • GVS Genome Variation Server (meta DB containing dbSNP, HapMap phase 3)
  • dbSNP DB of short genetic variations by NCBI
  • 1000 Genome Project Deep catalog of human genetic variation
  • HapMap Project Catalog of human genetic variation
  • Exome Variant Server by NHLBI GO Exome sequencing project (ESP)
  • MutaDATABASE a centralized and standardized DNA variation DB
  • HGMD The human gene mutation database (The professional version of DB is commercial.)
  • TCGA The Cancer Genome Atlas
  • ICGC cancer genome project International Cancer Genome Consortium Cancer genome project
  • 1001 Genome Project Genetic variation] of natural population of Arabidopsis

Prediction of deleteriousness of SNV

Transcriptome

Proteome/Localisome

  • SUBA SUBcellular location DB for Arabidopsis proteins

Diseasome/Phenome/Metabolome

Genotype-to-phenotype map

Interactome/Network

TF/miRNA/Regulaorty network

Chemical/Drug DBs

Side effect/Toxicogenomics DBs

  • CTD The Comparative Toxicogenomics database
  • SIDER Side Effect Resource
  • CEBS Chemical Effects in Biological Systems, an integrated public repository for toxicogenomics data

Animal genomes

Plant genomes

Microbial/Microbiome genomes

Protozoa genomes

Other resources

  • GOLD Genome Online Database-Genome project statistics and download links
  • CAGI Critical Assessment of Genome Interpretation
  • nightscience Collective creativity in scientific discovery games
Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox