Difference between revisions of "Web Resources"

From Bioinformatics Lab
Jump to: navigation, search
(Cancer, Cell Line Profiles)
Line 121: Line 121:
 
*[http://www.sanger.ac.uk/genetics/CGP/NCI60/ NCI60 mutation data]
 
*[http://www.sanger.ac.uk/genetics/CGP/NCI60/ NCI60 mutation data]
 
*[https://cabig.nci.nih.gov/caArray_GSKdata/ GKS Cancer Cell Line Data] genomic profiles for 300 cell lines
 
*[https://cabig.nci.nih.gov/caArray_GSKdata/ GKS Cancer Cell Line Data] genomic profiles for 300 cell lines
 +
*[http://colt.ccbr.utoronto.ca/cancer/ COLT-cancer database] shRNA-based essential gene profiles for 70 breast, pancreatic, ovarian cancer cell lines
  
 
== Other resources ==
 
== Other resources ==

Revision as of 20:22, 12 January 2012

Contents

GATEWAY DB

Ontology/Pathway

Variome

  • GVS Genome Variation Server (meta DB containing dbSNP, HapMap phase 3)
  • dbSNP DB of short genetic variations by NCBI
  • 1000 Genome Project Deep catalog of human genetic variation
  • HapMap Project Catalog of human genetic variation
  • Exome Variant Server by NHLBI GO Exome sequencing project (ESP)
  • MutaDATABASE a centralized and standardized DNA variation DB
  • HGMD The human gene mutation database (The professional version of DB is commercial.)
  • TCGA The Cancer Genome Atlas
  • ICGC cancer genome project International Cancer Genome Consortium Cancer genome project
  • 1001 Genome Project Genetic variation] of natural population of Arabidopsis

Prediction of deleteriousness of SNV

Transcriptome

Proteome/Localisome

  • SUBA SUBcellular location DB for Arabidopsis proteins

Diseasome/Phenome

Genotype-to-phenotype map

Interactome/Network

TF/miRNA/Regulaorty network

Chemical/Drug DBs

Side effect/Toxicogenomics DBs

  • CTD The Comparative Toxicogenomics database
  • SIDER Side Effect Resource
  • CEBS Chemical Effects in Biological Systems, an integrated public repository for toxicogenomics data

Animal genomes

Plant genomes

Microbial/Microbiome genomes

Protozoa genomes

Cancer, Cell Line Profiles

Other resources

  • GOLD Genome Online Database-Genome project statistics and download links
  • CAGI Critical Assessment of Genome Interpretation
  • nightscience Collective creativity in scientific discovery games
Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox