Difference between revisions of "Web Resources"

From Bioinformatics Lab
Jump to: navigation, search
(Metagenomes)
(Metagenomes)
Line 82: Line 82:
 
== Metagenomes ==
 
== Metagenomes ==
 
*[http://portal.camera.calit2.net/gridsphere/gridsphere CAMERA 2.0] Curated DB and analysis tool for metagenomes
 
*[http://portal.camera.calit2.net/gridsphere/gridsphere CAMERA 2.0] Curated DB and analysis tool for metagenomes
*[http://www.ncbi.nlm.nih.gov/genomes/lenvs.cgi] NCBI Metagenome DB. Categorized with metagenome types, sources and sequencing methods.
+
*[http://www.ncbi.nlm.nih.gov/genomes/lenvs.cgi NCBI Metagenome DB] Categorized with metagenome types, sources and sequencing methods.
  
 
== Others ==
 
== Others ==

Revision as of 09:18, 22 August 2011

Contents

Variome

Transcriptome

Proteome/Localisome

  • SUBA SUBcellular location DB for Arabidopsis proteins

Phenome/Metabolome

  • OMIM Human disease DB
  • ICD International Classification of Disease by WHO
  • GenomeRNAi A Phenotype DB for large-scale RNAi screens (human, mouse, fly, worm...)
  • cloroplast2010 Phenome/metabolome DB for Arabidopsis clroloplast gene KO lines (by MSU)

Genotype-to-phenotype map

Interactome/Network

TF/miRNA/Regulaorty network

Chemical/Drug/Drug network

  • PubChem
  • STITCH DB for known and predicted chemical-protein interaction

Ontology/Pathway

Bacterial genomes

Fungal genomes

Animal genomes

Plant genomes

Metagenomes

  • CAMERA 2.0 Curated DB and analysis tool for metagenomes
  • NCBI Metagenome DB Categorized with metagenome types, sources and sequencing methods.

Others

  • GOLD Genome Online Database-Genome project statistics and download links
  • CAGI Critical Assessment of Genome Interpretation
  • nightscience Collective creativity in scientific discovery games
Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox