Web Resources

From Bioinformatics Lab
Revision as of 11:28, 13 January 2012 by Il1001 (Talk | contribs)

Jump to: navigation, search

Contents

GATEWAY DBs

Pathway Annotation DBs

Genomic Variation DBs

  • GVS Genome Variation Server (meta DB containing dbSNP, HapMap phase 3)
  • dbSNP DB of short genetic variations by NCBI
  • 1000 Genome Project Deep catalog of human genetic variation
  • HapMap Project Catalog of human genetic variation
  • Exome Variant Server by NHLBI GO Exome sequencing project (ESP)
  • MutaDATABASE a centralized and standardized DNA variation DB
  • HGMD The human gene mutation database (The professional version of DB is commercial.)
  • 1001 Genome Project Genetic variation] of natural population of Arabidopsis

Genotype-to-Phenotype Resources

Mutation Effect Prediction Tools

Gene Expression DBs

Protein Expression DBs

  • SUBA SUBcellular location DB for Arabidopsis proteins

Protein/Gene Interaction DBs

Transcriptional Regulation DBs

Phenotype/Disease Annotation DBs

Drug-to-Target DBs

Side effect/Toxicogenomics DBs

  • CTD The Comparative Toxicogenomics database
  • SIDER Side Effect Resource
  • CEBS Chemical Effects in Biological Systems, an integrated public repository for toxicogenomics data

Animal Genome DBs

Plant Genome DBs

Microbial/Microbiome DBs

Cancer Genome/Cell Line Biology DBs

Stem Cell Biology DBs

  • SCDE The Stem Cell Discovery Engine

Other Resources

  • GOLD Genome Online Database-Genome project statistics and download links
  • CAGI Critical Assessment of Genome Interpretation
  • nightscience Collective creativity in scientific discovery games
Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox