Favorite Knowledgebase

Transcriptome

• GEO
• Arrayexpress

Phenome

• OMIM

Genotype-to-phenotype map

• GWAS catalog

Interactome/Network

• Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)
• International Molecular Exchange Consortium (IMEx)
• Human Protein Reference Database (HPRD)

Chemical/Drug

• PubChem

Ontology/Pathway

• Gene Ontology
• Biocyc

Bacterial genomes

• Pseudomonas Genome Database

Fungal genomes

• Saccharomyces Genome Database
• Candida Genome Database

Animal genomes

• WormBase
• FlyBase
• MGI

Plant genomes

• Plant Physiology web
• TAIR
• Gramene
• MaizeGDB