People:JH Shin

Junha Shin Ph.D, Dept. of Biotechnology, Yonsei University (09/2008 – 02/2014) Thesis: Improved methods of functional gene network construction by reinforced genomic context information Combined M.S & Ph.D program, Dept. of Biology, Yonsei University (03/2005 – 08/2008) Theme : Molecular Biological / Proteomic analysis of modifications and functions of IAPs and NF-κB in human cancer cells B.S, Dept. of Biology, Yonsei University (03/1998 – 02/2005, mandatory military service : 06/2000 – 08/2002)

Current Research Interests

• Systems Biology and Network Biology
• Genetic architecture interpretation
• Genomics and Epigenetics

Publications

• Hanhae Kim, Kwang-Woo Jung, Shinae Maeng, Ying-Lien Chen, Junha Shin, Jung Eun Shim, Sohyun Hwang, Guilhem Janbon, Taeyup Kim, Joseph Heitman, Yong-Sun Bahn and Insuk Lee, Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans. Sci Rep. 5: 8767. (2015), doi: 10.1038/srep08767
• Hanhae Kim, Jung Eun Shim, Junha Shin and Insuk Lee, EcoliNet: a database of cofunctional gene network for Escherichia coli. Database 2015: bav001. (2015), doi: 10.1093/database/bav001
• Tak Lee, Sunmo Yang, Eiru Kim, Younhee Ko, Sohyun Hwang, Junha Shin, Jung Eun Shim, Hongseok Shim, Hyojin Kim, Chanyoung Kim and Insuk Lee, AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species, Nucleic Acids Research, 43 (D1): D996-D1002 (2015)
• Ara Cho, Junha Shin, Sohyun Hwang, Chanyung Kim, Hongsuk Shim, Hyojin Kim, Hanhae Kim, Insuk Lee, WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans, Nucleic Acids Research, 42 (Web Server issue), W76 - 82 (2014)
• Junha Shin, Tak Lee, Hanhae Kim and Insuk Lee, Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction. Mol. BioSyst., 10 (1), 24 - 29 (2014)
• Hanhae Kim, Junha Shin, Eiru Kim, Hyojin Kim, Sohyun Hwang, Jung Eun Shim and Insuk Lee. YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae, Nucleic Acids Research, 42 (D1), D731-D736 (2014)
• Lee Chae, Insuk Lee, Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. Current Opinion in Plant Biology, 15:1-8 (2012)
• Hyung-Seung Jin, Hyung-Sun Park, Jun-Ha Shin, Dong-Hwan Kim, Sung-Hun Jun, Chang-Jun Lee, and Tae H. Lee. A novel inhibitor of apoptosis protein (IAP)-interacting protein, Vestigial-like (Vgl)-4, counteracts apoptosis-inhibitory function of IAPs by nuclear sequestration. Biochemical and Biophysical Research Communications, 412 (3), 454-459 (2011)
• Insuk Lee, Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte. Predicting genetic modifier loci using functional gene networks. Genome Research, 20 (8), 1143-1153 (2010)