Difference between revisions of "Favorite Knowledgebase"
From Bioinformatics Lab
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== Variome == | == Variome == | ||
| − | |||
== Transcriptome == | == Transcriptome == | ||
| − | *[http://www. | + | *[http://www.ncbi.nlm.nih.gov/geo/ GEO] |
| + | *[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress] | ||
== Proteome == | == Proteome == | ||
| − | |||
== Metabolome == | == Metabolome == | ||
| − | |||
== Phenome == | == Phenome == | ||
| − | *[http://www. | + | *[http://www.ncbi.nlm.nih.gov/omim OMIM] |
== Genotype-to-phenotype map == | == Genotype-to-phenotype map == | ||
| − | *[http://www. | + | *[http://www.genome.gov/gwastudies/ GWAS catalog] |
== Interactome/Network == | == Interactome/Network == | ||
| − | *[http:// | + | *[http://code.google.com/p/psicquic/ Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)] |
| + | *[http://www.imexconsortium.org/ International Molecular Exchange Consortium (IMEx)] | ||
| + | *[http://www.hprd.org/ Human Protein Reference Database (HPRD)] | ||
== TF/miRNA == | == TF/miRNA == | ||
| − | |||
== Chemical/Drug == | == Chemical/Drug == | ||
| − | *[http:// | + | *[http://pubchem.ncbi.nlm.nih.gov/ PubChem] |
== Ontology/Pathway == | == Ontology/Pathway == | ||
| − | *[http://www. | + | *[http://www.geneontology.org/ Gene Ontology] |
| + | *[http://biocyc.org/ Biocyc] | ||
== Bacterial genomes == | == Bacterial genomes == | ||
| − | *[http://www. | + | *[http://www.pseudomonas.com/ Pseudomonas Genome Database] |
== Fungal genomes == | == Fungal genomes == | ||
| − | *[http://www. | + | *[http://www.yeastgenome.org/ Saccharomyces Genome Database] |
| + | *[http://www.candidagenome.org/ Candida Genome Database] | ||
== Animal genomes == | == Animal genomes == | ||
| − | *[http://www. | + | *[http://www.wormbase.org/ WormBase] |
| + | *[http://flybase.org/ FlyBase] | ||
| + | *[http://www.informatics.jax.org/ MGI] | ||
== Plant genomes == | == Plant genomes == | ||
| − | *[http://www. | + | *[http://5e.plantphys.net/index.php Plant Physiology web] |
| + | *[http://www.arabidopsis.org/ TAIR] | ||
| + | *[http://www.gramene.org/ Gramene] | ||
| + | *[http://www.maizegdb.org/ MaizeGDB] | ||
== Metagenomes == | == Metagenomes == | ||
| − | |||
== Stem Cells == | == Stem Cells == | ||
| − | |||
== Others == | == Others == | ||
| − | |||
Latest revision as of 16:55, 23 July 2011
Contents |
[edit] Variome
[edit] Transcriptome
[edit] Proteome
[edit] Metabolome
[edit] Phenome
[edit] Genotype-to-phenotype map
[edit] Interactome/Network
- Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)
- International Molecular Exchange Consortium (IMEx)
- Human Protein Reference Database (HPRD)
