Difference between revisions of "People:JH Shin"
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===Junha Shin=== | ===Junha Shin=== | ||
*'''Ph.D''', Dept. of Biotechnology, Yonsei University (09/2008 – 02/2014) | *'''Ph.D''', Dept. of Biotechnology, Yonsei University (09/2008 – 02/2014) | ||
| − | '''Thesis''' : Improved methods of functional gene network construction by reinforced genomic context information | + | : '''Thesis''': Improved methods of functional gene network construction by reinforced genomic context information |
*Combined M.S & Ph.D program, Dept. of Biology, Yonsei University (03/2005 – 08/2008) | *Combined M.S & Ph.D program, Dept. of Biology, Yonsei University (03/2005 – 08/2008) | ||
| − | ''Theme : Molecular Biological / Proteomic analysis of modifications and functions of IAPs and NF-κB in human cancer cells'' | + | : ''Theme'' : ''Molecular Biological / Proteomic analysis of modifications and functions of IAPs and NF-κB in human cancer cells'' |
*'''B.S''', Dept. of Biology, Yonsei University (03/1998 – 02/2005, ''mandatory military service'' : 06/2000 – 08/2002) | *'''B.S''', Dept. of Biology, Yonsei University (03/1998 – 02/2005, ''mandatory military service'' : 06/2000 – 08/2002) | ||
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| Line 13: | Line 13: | ||
==Current Research Interests== | ==Current Research Interests== | ||
*Systems Biology and Network Biology | *Systems Biology and Network Biology | ||
| − | * | + | *Genetic architecture interpretation |
| − | * | + | *Genomics and Epigenetics |
==Publications== | ==Publications== | ||
| − | * '''Junha Shin''', Tak Lee, Hanhae Kim and Insuk Lee, Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction. | + | * Hanhae Kim, Kwang-Woo Jung, Shinae Maeng, Ying-Lien Chen, '''Junha Shin''', Jung Eun Shim, Sohyun Hwang, Guilhem Janbon, Taeyup Kim, Joseph Heitman, Yong-Sun Bahn and Insuk Lee, Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans. ''Sci Rep. 5: 8767. (2015)'', doi: 10.1038/srep08767 |
| − | * Hanhae Kim, '''Junha Shin''', Eiru Kim, Hyojin Kim, Sohyun Hwang, Jung Eun Shim and Insuk Lee. YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae, | + | * Hanhae Kim, Jung Eun Shim, '''Junha Shin''' and Insuk Lee, EcoliNet: a database of cofunctional gene network for Escherichia coli. ''Database 2015: bav001. (2015)'', doi: 10.1093/database/bav001 |
| − | * Lee Chae, Insuk Lee, '''Junha Shin''', and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. | + | * Tak Lee, Sunmo Yang, Eiru Kim, Younhee Ko, Sohyun Hwang, '''Junha Shin''', Jung Eun Shim, Hongseok Shim, Hyojin Kim, Chanyoung Kim and Insuk Lee, AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species, ''Nucleic Acids Research, 43 (D1): D996-D1002 (2015)'' |
| − | * Hyung-Seung Jin, Hyung-Sun Park, '''Jun-Ha Shin''', Dong-Hwan Kim, Sung-Hun Jun, Chang-Jun Lee, and Tae H. Lee. A novel inhibitor of apoptosis protein (IAP)-interacting protein, Vestigial-like (Vgl)-4, counteracts apoptosis-inhibitory function of IAPs by nuclear sequestration. | + | * Ara Cho, '''Junha Shin''', Sohyun Hwang, Chanyung Kim, Hongsuk Shim, Hyojin Kim, Hanhae Kim, Insuk Lee, WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans, ''Nucleic Acids Research, 42 (Web Server issue), W76 - 82 (2014)'' |
| − | * Insuk Lee, Ben Lehner, Tanya Vavouri, '''Junha Shin''', Andrew G. Fraser, and Edward M. Marcotte. Predicting genetic modifier loci using functional gene networks. | + | * '''Junha Shin''', Tak Lee, Hanhae Kim and Insuk Lee, Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction. ''Mol. BioSyst., 10 (1), 24 - 29 (2014)'' |
| + | * Hanhae Kim, '''Junha Shin''', Eiru Kim, Hyojin Kim, Sohyun Hwang, Jung Eun Shim and Insuk Lee. YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae, ''Nucleic Acids Research, 42 (D1), D731-D736 (2014)'' | ||
| + | * Lee Chae, Insuk Lee, '''Junha Shin''', and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. ''Current Opinion in Plant Biology, 15:1-8 (2012)'' | ||
| + | * Hyung-Seung Jin, Hyung-Sun Park, '''Jun-Ha Shin''', Dong-Hwan Kim, Sung-Hun Jun, Chang-Jun Lee, and Tae H. Lee. A novel inhibitor of apoptosis protein (IAP)-interacting protein, Vestigial-like (Vgl)-4, counteracts apoptosis-inhibitory function of IAPs by nuclear sequestration. ''Biochemical and Biophysical Research Communications, 412 (3), 454-459 (2011)'' | ||
| + | * Insuk Lee, Ben Lehner, Tanya Vavouri, '''Junha Shin''', Andrew G. Fraser, and Edward M. Marcotte. Predicting genetic modifier loci using functional gene networks. ''Genome Research, 20 (8), 1143-1153 (2010)'' | ||
Latest revision as of 15:00, 9 March 2015
|
[edit] Junha Shin
|
[edit] Current Research Interests
- Systems Biology and Network Biology
- Genetic architecture interpretation
- Genomics and Epigenetics
[edit] Publications
- Hanhae Kim, Kwang-Woo Jung, Shinae Maeng, Ying-Lien Chen, Junha Shin, Jung Eun Shim, Sohyun Hwang, Guilhem Janbon, Taeyup Kim, Joseph Heitman, Yong-Sun Bahn and Insuk Lee, Network-assisted genetic dissection of pathogenicity and drug resistance in the opportunistic human pathogenic fungus Cryptococcus neoformans. Sci Rep. 5: 8767. (2015), doi: 10.1038/srep08767
- Hanhae Kim, Jung Eun Shim, Junha Shin and Insuk Lee, EcoliNet: a database of cofunctional gene network for Escherichia coli. Database 2015: bav001. (2015), doi: 10.1093/database/bav001
- Tak Lee, Sunmo Yang, Eiru Kim, Younhee Ko, Sohyun Hwang, Junha Shin, Jung Eun Shim, Hongseok Shim, Hyojin Kim, Chanyoung Kim and Insuk Lee, AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species, Nucleic Acids Research, 43 (D1): D996-D1002 (2015)
- Ara Cho, Junha Shin, Sohyun Hwang, Chanyung Kim, Hongsuk Shim, Hyojin Kim, Hanhae Kim, Insuk Lee, WormNet v3: a network-assisted hypothesis-generating server for Caenorhabditis elegans, Nucleic Acids Research, 42 (Web Server issue), W76 - 82 (2014)
- Junha Shin, Tak Lee, Hanhae Kim and Insuk Lee, Complementarity between distance- and probability-based methods of gene neighbourhood identification for pathway reconstruction. Mol. BioSyst., 10 (1), 24 - 29 (2014)
- Hanhae Kim, Junha Shin, Eiru Kim, Hyojin Kim, Sohyun Hwang, Jung Eun Shim and Insuk Lee. YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae, Nucleic Acids Research, 42 (D1), D731-D736 (2014)
- Lee Chae, Insuk Lee, Junha Shin, and Seung Yon Rhee. Towards understanding how molecular networks evolve in plant. Current Opinion in Plant Biology, 15:1-8 (2012)
- Hyung-Seung Jin, Hyung-Sun Park, Jun-Ha Shin, Dong-Hwan Kim, Sung-Hun Jun, Chang-Jun Lee, and Tae H. Lee. A novel inhibitor of apoptosis protein (IAP)-interacting protein, Vestigial-like (Vgl)-4, counteracts apoptosis-inhibitory function of IAPs by nuclear sequestration. Biochemical and Biophysical Research Communications, 412 (3), 454-459 (2011)
- Insuk Lee, Ben Lehner, Tanya Vavouri, Junha Shin, Andrew G. Fraser, and Edward M. Marcotte. Predicting genetic modifier loci using functional gene networks. Genome Research, 20 (8), 1143-1153 (2010)
