Difference between revisions of "Software"

Revision as of 12:34, 11 June 2016

Co-functional networks: Organism-specific network-assisted hypothesis generation servers

Animal

Mus musculus	Caenorhabditis elegans	Drosophila melanogaster	Homo sapiens

Plant

Arabidopsis thaliana	Oryza sativa

Microbe

Pseudomonas aeruginosa	Escherichia coli	Saccharomyces cerevisiae	Cryptococcus neoformans

TRRUST: A reference database of human TF-target interactions

TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.

MUFFINN: cancer gene discovery via network analysis of somatic mutation data

MUFFINN (MUtations For Functional Impact on Network Neighbors).

MORPHIN: Network-assisted prediction of disease pathways in model organisms

Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.

JiffyNet:Instant gene network building server for newly sequenced species

Jiffy (instant) gene network modeler for newly sequenced species

RIDDLE: Network-assisted Gene Set Analysis (human only)

RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.

Domain-based PPI networks by Weighted Mutual Information (WMI)

Project Page