Difference between revisions of "Software"
From Bioinformatics Lab
| Line 45: | Line 45: | ||
|align="center"|''Escherichia coli'' | |align="center"|''Escherichia coli'' | ||
|} | |} | ||
| + | |||
| + | ==''Building your network for all other species''== | ||
| + | {|border="0" width="400" | ||
| + | |align="center"|[[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] | ||
| + | |- | ||
| + | |align="center"|''JiffyNet:Instant gene network building server for newly sequenced species'' | ||
| + | |} | ||
| + | |||
| + | ==''' for any sequenced species'''== | ||
| + | [[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] '''JiffyNet:Instant gene network building server for newly sequenced species''' | ||
| + | |||
| Line 66: | Line 77: | ||
=='''Other Network Biology tools'''== | =='''Other Network Biology tools'''== | ||
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions''' | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions''' | ||
| − | |||
| − | |||
| − | |||
| − | |||
Revision as of 10:28, 24 December 2016
Co-functional networks and hypothesis generation servers
Human and Animals
|
|
|
|
|
| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
|
|
|
| Arabidopsis thaliana | Oryza sativa | Glycine max |
Fungi
|
|
| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
|
|
| Pseudomonas aeruginosa | Escherichia coli |
Building your network for all other species
|
| JiffyNet:Instant gene network building server for newly sequenced species |
for any sequenced species
JiffyNet:Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
MUFFINN (MUtations For Functional Impact on Network Neighbors): cancer gene discovery via network analysis of somatic mutation data
MORPHIN (Model Organisms Projected on a Human Integrated Gene Network): Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions
RIDDLE (Reflective diffusion and local extension): Network-assisted Gene Set Analysis (human only)
