Difference between revisions of "Software"
From Bioinformatics Lab
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=='''Other Network Biology tools'''== | =='''Other Network Biology tools'''== | ||
| − | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST | + | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST: A reference database of human TF-target interactions''' |
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| + | [[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] '''RIDDLE: Network-assisted Gene Set Analysis (human only)''' | ||
=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | =='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | ||
[[WMI|<big>'''Project Page'''</big>]] | [[WMI|<big>'''Project Page'''</big>]] | ||
Revision as of 12:16, 4 March 2017
Co-functional networks and hypothesis generation servers
Human and Animals
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Oryza sativa | Glycine max | Solanum lycopersicum | Triticum aestivum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your co-functional networks for all other species
JiffyNet:Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: a web server for network-based boosting of human genome-wide association data
MUFFINN: cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST: A reference database of human TF-target interactions
RIDDLE: Network-assisted Gene Set Analysis (human only)
