Difference between revisions of "Software"
From Bioinformatics Lab
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=='''Build your co-functional networks for all other species'''== | =='''Build your co-functional networks for all other species'''== | ||
[[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] | [[File:Jiffynetlogo4 small.jpg |150px|link=http://www.jiffynet.org]] | ||
| − | '''JiffyNet:Instant gene network building server for newly sequenced species | + | '''JiffyNet''': Instant gene network building server for newly sequenced species |
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=='''Network-based servers for Disease Research'''== | =='''Network-based servers for Disease Research'''== | ||
| − | [[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] '''COEXPEDIA: | + | [[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] '''COEXPEDIA''': Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH) |
| − | [[File:GWAB_logo.png |150px|link=http://www.inetbio.org/gwab]] '''GWAB: | + | [[File:GWAB_logo.png |150px|link=http://www.inetbio.org/gwab]] '''GWAB''': A web server for network-based boosting of human genome-wide association data |
| − | [[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] '''MUFFINN: | + | [[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] '''MUFFINN''': Cancer gene discovery via network analysis of somatic mutation data |
| − | [[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] '''MORPHIN: Network-assisted prediction of disease pathways in model organisms | + | [[File:Logo morphin.png|150px|link=http://www.inetbio.org/morphin/]] '''MORPHIN''': Network-assisted prediction of disease pathways in model organisms |
Revision as of 12:18, 4 March 2017
Co-functional networks and hypothesis generation servers
Human and Animals
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Oryza sativa | Glycine max | Solanum lycopersicum | Triticum aestivum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your co-functional networks for all other species
JiffyNet: Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: A web server for network-based boosting of human genome-wide association data
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST: A reference database of human TF-target interactions
RIDDLE: Network-assisted Gene Set Analysis (human only)
