Difference between revisions of "Software"
From Bioinformatics Lab
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==''Bacteria''== | ==''Bacteria''== | ||
{|border="0" width="200" | {|border="0" width="200" | ||
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|align="center"|[[File:Pseudomonas logo.jpg|150px|link=http://www.inetbio.org/pseudomonasnet]] | |align="center"|[[File:Pseudomonas logo.jpg|150px|link=http://www.inetbio.org/pseudomonasnet]] | ||
| + | |align="center"|[[File:Staphnet_logo.JPG|150px|link=http://www.inetbio.org/staphnet]] | ||
| + | |align="center"|[[File:KlebNet_logo.png|150px|link=http://www.inetbio.org/klebnet]] | ||
|align="center"|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]] | |align="center"|[[File:EcoliNet.png|150px|link=http://www.inetbio.org/ecolinet]] | ||
|align="center"|[[File:XooNet_logo.png|150px|link=http://www.inetbio.org/xoonet]] | |align="center"|[[File:XooNet_logo.png|150px|link=http://www.inetbio.org/xoonet]] | ||
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|- | |- | ||
| − | |align="center"|Methicillin-resistant ''Staphylococcus aureus'' | + | |align="center"|''Pseudomonas aeruginosa (human pathogen)'' |
| − | |align="center"|'' | + | |align="center"|Methicillin-resistant ''Staphylococcus aureus (human pathogen)'' |
| + | |align="center"|''Klebsiella pneumoniae (human pathogen)'' | ||
|align="center"|''Escherichia coli'' | |align="center"|''Escherichia coli'' | ||
|align="center"|''Xanthomonas oryzae pv. oryzae'' | |align="center"|''Xanthomonas oryzae pv. oryzae'' | ||
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Revision as of 17:06, 21 December 2017
Gene Regulation Research Tools
TRRUST: A reference database of TF-target interactions in human and mouse
Network Medicine Tools
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
GWAB: A web server for network-based boosting of human genome-wide association data
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
MORPHIN: Network-assisted prediction of disease pathways in model organisms
RIDDLE: Network-assisted Gene Set Analysis (human only)
Co-functional Gene Networks
Human and Laboratory Animals
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Zea mays | Oryza sativa | Triticum aestivum | Glycine max | Solanum lycopersicum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa (human pathogen) | Methicillin-resistant Staphylococcus aureus (human pathogen) | Klebsiella pneumoniae (human pathogen) | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your own co-functional networks
JiffyNet: Instant gene network building server for newly sequenced species
Domain-based PPI networks by Weighted Mutual Information (WMI)
