Difference between revisions of "Software"
From Bioinformatics Lab
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=='''Network Medicine Tools '''== | =='''Network Medicine Tools '''== | ||
| − | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST''': | + | [[File:HumanNet_logo_with_title.png|150px|link=http://www.inetbio.org/humannet]]'''Homo sapiens''': Human gene networks for disease research |
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| + | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST''': Curated TF-target interaction networks in human and mouse | ||
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=='''Co-functional Gene Networks'''== | =='''Co-functional Gene Networks'''== | ||
| − | =='' | + | ==''Laboratory Animals''== |
| − | {|border="0" width=" | + | {|border="0" width="400" |
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|align="center"|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]] | |align="center"|[[file:MouseNetLogo.png|150px|link=http://www.inetbio.org/mousenet]] | ||
|align="center"|[[file:danionet_logo.png|150px|link=http://www.inetbio.org/danionet]] | |align="center"|[[file:danionet_logo.png|150px|link=http://www.inetbio.org/danionet]] | ||
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|align="center"|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]] | |align="center"|[[file:WormNetv3.jpg|150px|link=http://www.inetbio.org/wormnet]] | ||
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|align="center"|''Mus musculus'' | |align="center"|''Mus musculus'' | ||
|align="center"|''Danio rerio'' | |align="center"|''Danio rerio'' | ||
Revision as of 16:18, 13 August 2018
Network Medicine Tools
Homo sapiens: Human gene networks for disease research
TRRUST: Curated TF-target interaction networks in human and mouse
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
GWAB: A web server for network-based boosting of human genome-wide association data
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
MORPHIN: Network-assisted prediction of disease pathways in model organisms
RIDDLE: Network-assisted Gene Set Analysis (human only)
Co-functional Gene Networks
Laboratory Animals
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| Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Zea mays | Oryza sativa | Triticum aestivum | Glycine max | Solanum lycopersicum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa (human pathogen) | Methicillin-resistant Staphylococcus aureus (human pathogen) | Klebsiella pneumoniae (human pathogen) | Escherichia coli (popular lab/factory bacterial species) | Xanthomonas oryzae pv. oryzae (rice pathogen) |
Build your own co-functional networks
JiffyNet: Instant gene network building server for newly sequenced species
Network-augmented GWAS Analysis for Arabidopsis
araGWAB: genome-wide association boosting for Arabidopsis thaliana
Domain-based PPI networks by Weighted Mutual Information (WMI)
