Difference between revisions of "Software"
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=='''Domain2Pathway by Pathway Specificity (PS) '''== | =='''Domain2Pathway by Pathway Specificity (PS) '''== | ||
[[PS|<big>'''Project Page'''</big>]] | [[PS|<big>'''Project Page'''</big>]] | ||
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+ | =='''Single Cell RNA sequencing data analysis tool'''== | ||
+ | [[File:araGWAB_logo.png|150px|link=http://www.grnpedia.org/cytometry]] | ||
+ | '''VirtualCytometry''': A webserver for the study of immune cell differentiation using single-cell RNA sequencing data.'' |
Revision as of 14:07, 10 June 2019
Network Medicine Tools
HumanNet: Human gene networks for disease research
TRRUST: Curated TF-target interaction networks in human and mouse
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
GWAB: A web server for network-based boosting of human genome-wide association data
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
MORPHIN: Network-assisted prediction of disease pathways in model organisms
RIDDLE: Network-assisted Gene Set Analysis (human only)
NGSEA: Network-augmented gene set enrichment analysis tool
Co-functional Gene Networks
Laboratory Animals
Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
Arabidopsis thaliana | Zea mays | Oryza sativa | Triticum aestivum | Glycine max | Solanum lycopersicum |
Fungi
Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
Build your own co-functional networks
JiffyNet: Instant gene network building server for newly sequenced species
Network-augmented GWAS Analysis for Arabidopsis
araGWAB: genome-wide association boosting for Arabidopsis thaliana
Domain-based PPI networks by Weighted Mutual Information (WMI)
Domain2Pathway by Pathway Specificity (PS)
Single Cell RNA sequencing data analysis tool
VirtualCytometry: A webserver for the study of immune cell differentiation using single-cell RNA sequencing data.