Difference between revisions of "Favorite Knowledgebase"
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== Variome | == Variome == | ||
== Transcriptome | == Transcriptome == | ||
*[http://www. | *[http://www.ncbi.nlm.nih.gov/geo/ GEO] | ||
*[http://www.ebi.ac.uk/arrayexpress/ Arrayexpress] | |||
== Proteome | == Proteome == | ||
== | == Metabolome == | ||
== | == Phenome == | ||
*[http://www. | *[http://www.ncbi.nlm.nih.gov/omim OMIM] | ||
== | == Genotype-to-phenotype map == | ||
*[http://www. | *[http://www.genome.gov/gwastudies/ GWAS catalog] | ||
== | == Interactome/Network == | ||
*[http://www. | *[http://code.google.com/p/psicquic/ Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)] | ||
*[http://www.imexconsortium.org/ International Molecular Exchange Consortium (IMEx)] | |||
*[http://www.hprd.org/ Human Protein Reference Database (HPRD)] | |||
== | == TF/miRNA == | ||
== | == Chemical/Drug == | ||
*[http:// | *[http://pubchem.ncbi.nlm.nih.gov/ PubChem] | ||
== | == Ontology/Pathway == | ||
*[http://www. | *[http://www.geneontology.org/ Gene Ontology] | ||
*[http://biocyc.org/ Biocyc] | |||
== | == Bacterial genomes == | ||
*[http://www. | *[http://www.pseudomonas.com/ Pseudomonas Genome Database] | ||
== | == Fungal genomes == | ||
*[http://www. | *[http://www.yeastgenome.org/ Saccharomyces Genome Database] | ||
*[http://www.candidagenome.org/ Candida Genome Database] | |||
== | == Animal genomes == | ||
*[http://www. | *[http://www.wormbase.org/ WormBase] | ||
*[http://flybase.org/ FlyBase] | |||
*[http://www.informatics.jax.org/ MGI] | |||
== Plant genomes == | |||
*[http://5e.plantphys.net/index.php Plant Physiology web] | |||
*[http://www.arabidopsis.org/ TAIR] | |||
*[http://www.gramene.org/ Gramene] | |||
*[http://www.maizegdb.org/ MaizeGDB] | |||
== Metagenomes == | |||
== Stem Cells == | |||
== Others == | == Others == | ||
Latest revision as of 16:55, 23 July 2011
Variome
Transcriptome
Proteome
Metabolome
Phenome
Genotype-to-phenotype map
Interactome/Network
- Protemic Standard Initiative Common QUery InterfaCe (PSICQUIC)
- International Molecular Exchange Consortium (IMEx)
- Human Protein Reference Database (HPRD)