Difference between revisions of "Software"
From Bioinformatics Lab
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{|border="0" width="800" | {|border="0" width="800" | ||
|align="center"|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]] | |align="center"|[[File:Tools_YesatNetLogo.jpg|150px|link=http://www.inetbio.org/yeastnet]] | ||
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|align="center"|''Escherichia coli'' | |align="center"|''Escherichia coli'' | ||
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=='''TRRUST: A reference database of human TF-target interactions'''== | =='''TRRUST: A reference database of human TF-target interactions'''== | ||
Revision as of 19:21, 2 September 2016
Co-functional networks: Organism-specific network-assisted hypothesis generation servers
Human and Animal models
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Reference plant and Crops
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| Arabidopsis thaliana | Oryza sativa | Glycine max |
Bacteria and Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans | Pseudomonas aeruginosa | Escherichia coli |
TRRUST: A reference database of human TF-target interactions
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
MUFFINN: cancer gene discovery via network analysis of somatic mutation data
MUFFINN (MUtations For Functional Impact on Network Neighbors).
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
JiffyNet:Instant gene network building server for newly sequenced species
Jiffy (instant) gene network modeler for newly sequenced species
RIDDLE: Network-assisted Gene Set Analysis (human only)
RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
