Difference between revisions of "Software"
From Bioinformatics Lab
(→Transcriptional Regulatory Networks) |
|||
| Line 64: | Line 64: | ||
=='''Transcriptional Regulatory Networks'''== | =='''Transcriptional Regulatory Networks'''== | ||
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST''': A reference database of TF-target interactions in human and mouse | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] '''TRRUST''': A reference database of TF-target interactions in human and mouse | ||
| + | |||
| + | |||
| + | |||
| + | |||
=='''Network-based Disease Research Servers'''== | =='''Network-based Disease Research Servers'''== | ||
Revision as of 14:07, 1 August 2017
Co-functional gene networks
Human and Laboratory Animals
|
|
|
|
|
| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
|
|
|
|
|
|
| Arabidopsis thaliana | Zea mays | Oryza sativa | Triticum aestivum | Glycine max | Solanum lycopersicum |
Fungi
|
|
| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
|
|
|
| Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your own co-functional networks
JiffyNet: Instant gene network building server for newly sequenced species
Transcriptional Regulatory Networks
TRRUST: A reference database of TF-target interactions in human and mouse
Network-based Disease Research Servers
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: A web server for network-based boosting of human genome-wide association data
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
RIDDLE: Network-assisted Gene Set Analysis (human only)
