Difference between revisions of "Software"
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=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | =='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | ||
[[WMI|<big>'''Project Page'''</big>]] | [[WMI|<big>'''Project Page'''</big>]] | ||
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| + | =='''Domain2Pathway by Pathway Specificity (PS) '''== | ||
| + | [[PS|<big>'''Project Page'''</big>]] | ||
Revision as of 15:35, 22 September 2017
Co-functional gene networks
Human and Laboratory Animals
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Zea mays | Oryza sativa | Triticum aestivum | Glycine max | Solanum lycopersicum |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Methicillin-resistant Staphylococcus aureus | Pseudomonas aeruginosa | Escherichia coli | Xanthomonas oryzae pv. oryzae |
Build your own co-functional networks
JiffyNet: Instant gene network building server for newly sequenced species
Transcriptional Regulatory Networks
TRRUST: A reference database of TF-target interactions in human and mouse
Network-based Disease Research Servers
COEXPEDIA: Exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
GWAB: A web server for network-based boosting of human genome-wide association data
MUFFINN: Cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
RIDDLE: Network-assisted Gene Set Analysis (human only)
Domain-based PPI networks by Weighted Mutual Information (WMI)
