Difference between revisions of "Journal Club"

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|November 22 Mon
|November 22 Mon, 2010
|ER Kim
|ER Kim
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]
|[http://www.nature.com/nature/journal/v467/n7312/full/nature09326.html Functional_roles_fornoise_in_genetic_circuits]
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|November 22 Mon
|November 22 Mon, 2010
|T Lee
|T Lee
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]
|[http://www.nature.com/ng/journal/v42/n7/full/ng.610.html Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries]
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|November 8 Mon
|November 8 Mon, 2010
|AR Cho
|AR Cho
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]
|[http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000932 Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes]
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|November 8 Mon
|November 8 Mon, 2010
|SG Ji
|SG Ji
|[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B8JDC-50J4MRJ-2&_user=44062&_coverDate=10%2F10%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000004738&_version=1&_urlVersion=0&_userid=44062&md5=7667a67cf8ba3f68117b8d0ff85a8887&searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]
|[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B8JDC-50J4MRJ-2&_user=44062&_coverDate=10%2F10%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000004738&_version=1&_urlVersion=0&_userid=44062&md5=7667a67cf8ba3f68117b8d0ff85a8887&searchtype=a It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks]
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|***
|***
|October 25 Mon
|October 25 Mon, 2010
|HH Kim
|HH Kim
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]
|[http://genome.cshlp.org/content/early/2010/06/15/gr.104216.109 A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes]
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|***
|***
|October 25 Mon
|October 25 Mon, 2010
|JH Shin
|JH Shin
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]
|[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0012139 A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster]
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|October 11 Mon
|October 11 Mon, 2010
|JE Shim
|JE Shim
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]
|[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913399/?tool=pubmed Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders]
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|September 13 Mon
|September 13 Mon, 2010
|SH Hwang
|SH Hwang
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]
|[http://www.nature.com/ng/journal/v42/n7/full/ng.600.html Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells]
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|May 26 Wed
|May 26 Wed, 2010
|AR Cho
|AR Cho
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]
|[[media:100428_network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf|network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf]]
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|May 19 Wed
|May 19 Wed, 2010
|SG Ji
|SG Ji
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]
|[[media:100421_interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf|interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf]]
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|April 21 Wed
|April 21 Wed, 2010
|JH Shin
|JH Shin
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]
|[[media:100414_identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf|identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf]]
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|April 14 Wed
|April 14 Wed, 2010
|TY Oh
|TY Oh
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]
|[http://www.cell.com/retrieve/pii/S0092867410000796 an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man]
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|rowspan = "2" |
|rowspan = "2" |
|rowspan = "2" |April 7 Wed
|rowspan = "2" |April 7 Wed, 2010
|HHkim
|HHkim
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|Mar 31 Wed
|Mar 31 Wed, 2010
|JE Shim
|JE Shim
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]
|[[media:100331_toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf|toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf]]
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|Mar 24 Wed
|Mar 24 Wed, 2010
|SH Hwang
|SH Hwang
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]
|[http://www.nature.com/nbt/journal/v27/n2/abs/nbt.1522.html dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome]
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|Jan 18 Mon
|Jan 18 Mon, 2010
|TY Oh(T Lee)
|TY Oh(T Lee)
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies
|JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies
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|Jan 16 Sat
|Jan 16 Sat, 2010
|JE Shim(MH Lee)
|JE Shim(MH Lee)
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells
|systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells
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|Jan 15 Fri
|Jan 15 Fri, 2010
|SG Ji
|SG Ji
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions
|distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions
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|Jan 14 Thu
|Jan 14 Thu, 2010
|HH kim
|HH kim
|chemogenomic_profiling_predicts_antifungal_synergies
|chemogenomic_profiling_predicts_antifungal_synergies
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|Jan 13 Wed
|Jan 13 Wed, 2010
|JH Shin(ER Kim)
|JH Shin(ER Kim)
|edgetic_perturbation_models_of_human_inherited_disorders
|edgetic_perturbation_models_of_human_inherited_disorders
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|Jan 12 Tue
|Jan 12 Tue, 2010
|TY Oh(T Lee)
|TY Oh(T Lee)
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans
|analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans
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|Jan 11 Mon
|Jan 11 Mon, 2010
|JE Shim(MH Lee)
|JE Shim(MH Lee)
|predicting_new_molecular_targets_for_known_drugs.pdf
|predicting_new_molecular_targets_for_known_drugs.pdf
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|Jan 09 Sat
|Jan 09 Sat, 2010
|SG Ji
|SG Ji
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance
|harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance
|-
|-
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|Jan 08 Fri
|Jan 08 Fri, 2010
|AR Cho
|AR Cho
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer
|an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer
|-
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|Jan 07 Thu
|Jan 07 Thu, 2010
|HH Kim  
|HH Kim  
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network
|a_phenotypic_profile_of_the_candida_albicans_regulatory_network
|-
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|Jan 06 Wed
|Jan 06 Wed, 2010
|JH Shin(ER Kim)
|JH Shin(ER Kim)
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs
|a_global_view_of_protein_expression_in_human_cells_tissues_and_organs
|}
|}

Revision as of 19:25, 11 October 2010

November 22 Mon, 2010 ER Kim Functional_roles_fornoise_in_genetic_circuits
November 22 Mon, 2010 T Lee Estimation_of_effect_size_distribution_from_genome-wide_association_studies_and_implications_for_future_discoveries
November 8 Mon, 2010 AR Cho Liver_and_Adipose_Expression_associated_SNPs_are_enriched_for_association_to_type_2_diabetes
November 8 Mon, 2010 SG Ji It's_the_machine_that_matters:_predicting_gene_function_and_phenotype_from_protein_networks
*** October 25 Mon, 2010 HH Kim A_genome-wide_map_of_human_genetic_interactions_inferred_from_radiation_hybrid_genotypes
*** October 25 Mon, 2010 JH Shin A_Genome-Wide_Gene_Function_Prediction_Resource_for_Drosophila_melanogaster
October 11 Mon, 2010 JE Shim Dissecting_spatio-temporal_protein_networks_driving_human_heart_development_and_related_disorders
September 13 Mon, 2010 SH Hwang Transposable_elements_have_rewired_the_core_regulatory_network_of_human_embryonic_stem_cells

Limits_of_sequence_and_functional_conservation

May 26 Wed, 2010 AR Cho network_based_elucidation_of_human_disease_similarities_reveals_common_functional_modules_enriched_for_pluripotent_drug_targets.pdf
May 19 Wed, 2010 SG Ji interpreting_metabolomic_profiles_using_unbiased_pathway_models.pdf
April 21 Wed, 2010 JH Shin identification_of_networks_of_co_occurring_tumor_related_dna_copy_number_changes_using_a_genome_wide_scoringapproach.pdf
April 14 Wed, 2010 TY Oh an_atlas_of_combinatorial_transcriptional_regulation_in_mouse_and_man
April 7 Wed, 2010 HHkim

systematic_discovery_of_nonobvious_human_disease_models_through_orthologous_phenotypes

T Lee

genome_side_association_study_of_107_phenotypes_in_Arabidopsis_thaliana_inbred_lines

Mar 31 Wed, 2010 JE Shim toward_stem_cell_systems_biology_from_molecules_to_networks_and_landscapes.pdf

systems_biology_of_stem_cell_fate_and_cellular_reprogramming

Mar 24 Wed, 2010 SH Hwang dynamic_modularity_in_protein_interaction_networks_predicts_breast_cancer_outcome
Jan 18 Mon, 2010 TY Oh(T Lee) JournalClub_100118_a_tutorial_on_statistical_methods_for_population_association_studies
Jan 16 Sat, 2010 JE Shim(MH Lee) systems-level_dinamic_analyses_of_fate_change_in_murine_embryonic_stem_cells
Jan 15 Fri, 2010 SG Ji distinguishing_direct_versus_indirect_transcription_factor-DNA-interactions
Jan 14 Thu, 2010 HH kim chemogenomic_profiling_predicts_antifungal_synergies
Jan 13 Wed, 2010 JH Shin(ER Kim) edgetic_perturbation_models_of_human_inherited_disorders
Jan 12 Tue, 2010 TY Oh(T Lee) analysis_of_cell_fate_from_single-cell_gene_expression_profiles_in_C.elegans
Jan 11 Mon, 2010 JE Shim(MH Lee) predicting_new_molecular_targets_for_known_drugs.pdf

Reference:SEA(Similarity Ensemble Approach)

Jan 09 Sat, 2010 SG Ji harnessing_gene_expression_to_identify_the_genetic_basis_of_drug_resistance
Jan 08 Fri, 2010 AR Cho an_integrative_approach_to_reveal_driver_gene_fusions_from_paired_end_sequencing_data_in_cancer
Jan 07 Thu, 2010 HH Kim a_phenotypic_profile_of_the_candida_albicans_regulatory_network
Jan 06 Wed, 2010 JH Shin(ER Kim) a_global_view_of_protein_expression_in_human_cells_tissues_and_organs
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