Difference between revisions of "Software"
From Bioinformatics Lab
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| + | =='''TRRUST: A reference database of human TF-target interactions'''== | ||
| + | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes. | ||
| − | ==''' | + | |
| − | [[File:Cover title | + | =='''MUFFINN: cancer gene discovery via network analysis of somatic mutation data'''== |
| + | [[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] MUFFINN (MUtations For Functional Impact on Network Neighbors). | ||
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| − | ==''' | + | =='''RIDDLE: Network-assisted Gene Set Analysis (human only)'''== |
| − | [[File: | + | [[File:Cover title riddle.jpg|150px|link=http://www.functionalnet.org/riddle]] RIDDLE (Reflective diffusion and local extension) is currently available for only human genes. |
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=='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | =='''Domain-based PPI networks by Weighted Mutual Information (WMI) '''== | ||
[[WMI|<big>'''Project Page'''</big>]] | [[WMI|<big>'''Project Page'''</big>]] | ||
Revision as of 15:26, 3 June 2016
Co-functional networks: Organism-specific network-assisted hypothesis generation servers
Animal
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| Mus musculus | Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens |
Plant
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| Arabidopsis thaliana | Oryza sativa |
Microbe
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| Pseudomonas aeruginosa | Escherichia coli | Saccharomyces cerevisiae | Cryptococcus neoformans |
TRRUST: A reference database of human TF-target interactions
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.
MUFFINN: cancer gene discovery via network analysis of somatic mutation data
MUFFINN (MUtations For Functional Impact on Network Neighbors).
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
JiffyNet:Instant gene network building server for newly sequenced species
Jiffy (instant) gene network modeler for newly sequenced species
RIDDLE: Network-assisted Gene Set Analysis (human only)
RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
