Difference between revisions of "Software"
(→Other Network Biology tools) |
|||
| Line 54: | Line 54: | ||
[[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions. | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions. | ||
| − | |||
| − | |||
| − | |||
=='''MUFFINN: cancer gene discovery via network analysis of somatic mutation data'''== | =='''MUFFINN: cancer gene discovery via network analysis of somatic mutation data'''== | ||
Revision as of 16:02, 22 October 2016
Co-functional networks: Organism-specific network-assisted hypothesis generation servers
Human and Animals
|
|
|
|
|
| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
|
|
|
| Arabidopsis thaliana | Oryza sativa | Glycine max |
Fungi
|
|
| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
|
|
| Pseudomonas aeruginosa | Escherichia coli |
Other Network Biology tools
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH).
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions.
MUFFINN: cancer gene discovery via network analysis of somatic mutation data
MUFFINN (MUtations For Functional Impact on Network Neighbors).
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
JiffyNet:Instant gene network building server for newly sequenced species
Jiffy (instant) gene network modeler for newly sequenced species
RIDDLE: Network-assisted Gene Set Analysis (human only)
RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
