Difference between revisions of "Software"
From Bioinformatics Lab
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=='''Other Network Biology tools'''== | =='''Other Network Biology tools'''== | ||
| − | [[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH) | + | [[File:Coexpedia.png |150px|link=http://www.coexpedia.org]] ''COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)'' |
| + | [[File:TRRUST_logo.jpg |150px|link=http://www.grnpedia.org/trrust/]] ''TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions'' | ||
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| − | + | [[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] ''MUFFINN (MUtations For Functional Impact on Network Neighbors): cancer gene discovery via network analysis of somatic mutation data'' | |
| − | [[File:Cover title muffinn.png |150px|link=http://www.inetbio.org/muffinn/]] MUFFINN (MUtations For Functional Impact on Network Neighbors) | + | |
Revision as of 16:04, 22 October 2016
Co-functional networks: Organism-specific network-assisted hypothesis generation servers
Human and Animals
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| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
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| Arabidopsis thaliana | Oryza sativa | Glycine max |
Fungi
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| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
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| Pseudomonas aeruginosa | Escherichia coli |
Other Network Biology tools
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions
MUFFINN (MUtations For Functional Impact on Network Neighbors): cancer gene discovery via network analysis of somatic mutation data
MORPHIN: Network-assisted prediction of disease pathways in model organisms
Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.
JiffyNet:Instant gene network building server for newly sequenced species
Jiffy (instant) gene network modeler for newly sequenced species
RIDDLE: Network-assisted Gene Set Analysis (human only)
RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.
