Difference between revisions of "Software"
From Bioinformatics Lab
(→Plants) |
|||
| Line 22: | Line 22: | ||
|align="center"|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]] | |align="center"|[[file:RiceNetv2 logo.png|150px|link=http://www.inetbio.org/ricenet]] | ||
|align="center"|[[File:Soynetlogo.png|150px|link=http://www.inetbio.org/soynet]] | |align="center"|[[File:Soynetlogo.png|150px|link=http://www.inetbio.org/soynet]] | ||
| + | |align="center"|[[File:Tomatonet_logo.png|150px|link=http://www.inetbio.org/tomatonet]] | ||
|- | |- | ||
|align="center"|''Arabidopsis thaliana'' | |align="center"|''Arabidopsis thaliana'' | ||
|align="center"|''Oryza sativa'' | |align="center"|''Oryza sativa'' | ||
|align="center"|''Glycine max'' | |align="center"|''Glycine max'' | ||
| + | |align="center"|''Solanum lycopersicum'' | ||
|} | |} | ||
Revision as of 10:30, 3 January 2017
Co-functional networks and hypothesis generation servers
Human and Animals
|
|
|
|
|
| Homo sapiens | Mus musculus | Danio rerio | Drosophila melanogaster | Caenorhabditis elegans |
Plants
|
|
|
|
| Arabidopsis thaliana | Oryza sativa | Glycine max | Solanum lycopersicum |
Fungi
|
|
| Saccharomyces cerevisiae | Cryptococcus neoformans |
Bacteria
|
|
| Pseudomonas aeruginosa | Escherichia coli |
Build your co-functional networks for all other species
JiffyNet:Instant gene network building server for newly sequenced species
Network-based servers for Disease Research
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
MUFFINN (MUtations For Functional Impact on Network Neighbors): cancer gene discovery via network analysis of somatic mutation data
MORPHIN (Model Organisms Projected on a Human Integrated Gene Network): Network-assisted prediction of disease pathways in model organisms
Other Network Biology tools
TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions
RIDDLE (Reflective diffusion and local extension): Network-assisted Gene Set Analysis (human only)
